Rorug07G0010800

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006606
Physical Location & Seq
Reverse (-)
894506 .. 895205
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0010800.1

Sequence Viewer

Length: 492 bp
ATGTTGGAGCAGGCAGAACATTGCCTGGTGGAGACTTGCAAATTAACTAGGCGTGTTAGGGGCATTGGCAATGCAATAACTCAGGGGTTGATGAGAGGCATAACTAGGGAGGATCAAGAGAAGGGACGTCGGTGGTGGCGAGGCTCTAGAGTCGCCACTTCGCATTTGGATTTTTTGAAGTGGGAGTTCTATGTAGTGGATCAACCTGATATTATCAATGCATATTGCTTGTTCGGCGGCAAGATTTTGGTCTACACAGGGTTGTTTAGGTATTTTATAAGTGATGAGGAGATAGCTGCCATACTTTGTCATGAGGTTGGGCATGCTGTGGCTCGACATTATGCAGAGGCCATTACAAAATACTTGTGGCTTCTAATCCCGCAACTAGTTTTCAACTTCTTTCAATGTTTTAGCGGTGCGGTTGCTGCGCATGCACACACATTCGACGGATTGTGCGACCTTTTATTCACTCTTCCTTTTGCCCGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

163

Amino Acids

18.8

Weight (kDa)

7.67

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 52 - 131 3.2e-17 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AatII GACGTC 1 cut(s) 130
Acc16I TGCGCA 1 cut(s) 429
AccI GTMKAC 1 cut(s) 252
AciI CCGC 4 cut(s) 237, 380, 414, 419
AclWI GGATC 2 cut(s) 120, 207
AcyI GRCGYC 1 cut(s) 127
AgsI TTSAA 3 cut(s) 178, 394, 404
AhlI ACTAGT 1 cut(s) 385
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 2 cut(s) 120, 207
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 296, 425
AspLEI GCGC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 283, 412
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 26
BcuI ACTAGT 1 cut(s) 385
BfaI CTAG 4 cut(s) 48, 105, 147, 386
BisI GCNGC 3 cut(s) 238, 297, 426
BlsI GCNGC 3 cut(s) 239, 298, 427
Bme1390I CCNGG 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 127
Bse3DI GCAATG 2 cut(s) 19, 76
BseBI CCWGG 1 cut(s) 26
BseMI GCAATG 2 cut(s) 19, 76
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 283, 412
BshFI GGCC 1 cut(s) 350
BslFI GGGAC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 112, 199
BspACI CCGC 4 cut(s) 237, 380, 414, 419
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 310
BspPI GGATC 2 cut(s) 120, 207
BsrDI GCAATG 2 cut(s) 19, 76
BssMI GATC 2 cut(s) 112, 199
BssNI GRCGYC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 12, 324, 432
BstDEI CTNAG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 115, 202
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 112, 199
BstMWI GCNNNNNNNGC 3 cut(s) 234, 425, 431
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 326, 434
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 283, 412
BsuRI GGCC 1 cut(s) 350
Cac8I GCNNGC 3 cut(s) 12, 324, 432
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 430
CviAII CATG 3 cut(s) 311, 323, 431
CviJI RGCY 5 cut(s) 144, 296, 332, 350, 370
CviKI_1 RGCY 5 cut(s) 144, 296, 332, 350, 370
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 114, 201
DpnII GATC 2 cut(s) 112, 199
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 3 cut(s) 314, 326, 434
FaiI YATR 9 cut(s) 101, 192, 223, 278, 302, 312, 324, 342, 432
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 310, 322, 430
FauI CCCGC 1 cut(s) 387
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 238, 297, 426
Fsp4HI GCNGC 3 cut(s) 238, 297, 426
FspBI CTAG 4 cut(s) 48, 105, 147, 386
FspI TGCGCA 1 cut(s) 429
GlaI GCGC 1 cut(s) 429
GluI GCNGC 3 cut(s) 238, 297, 426
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 1 cut(s) 430
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 314, 326, 434
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 116, 147, 311
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 2 cut(s) 132, 449
HpyAV CCTTC 2 cut(s) 115, 480
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 39, 74, 221, 344, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 425, 431
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 314, 326, 434
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 112, 199
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 5 cut(s) 11, 38, 68, 219, 243
Lsp1109I GCAGC 2 cut(s) 283, 412
MaeI CTAG 4 cut(s) 48, 105, 147, 386
MaeII ACGT 1 cut(s) 127
MalI GATC 2 cut(s) 114, 201
MboI GATC 2 cut(s) 112, 199
MboII GAAGA 1 cut(s) 464
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 6 cut(s) 89, 103, 134, 280, 307, 340
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 234, 425, 431
NdeII GATC 2 cut(s) 112, 199
NlaIII CATG 3 cut(s) 314, 326, 434
NsbI TGCGCA 1 cut(s) 429
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 2 cut(s) 326, 434
PaeI GCATGC 2 cut(s) 326, 434
PagI TCATGA 1 cut(s) 310
PcsI WCGNNNNNNNCGW 2 cut(s) 136, 453
PkrI GCNGC 3 cut(s) 239, 298, 427
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PsiI TTATAA 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 3 cut(s) 238, 297, 426
Sau3AI GATC 2 cut(s) 112, 199
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 26
SetI ASST 7 cut(s) 130, 208, 272, 298, 318, 462, 491
SpeI ACTAGT 1 cut(s) 385
SphI GCATGC 2 cut(s) 326, 434
Sse9I AATT 1 cut(s) 41
SsiI CCGC 4 cut(s) 237, 380, 414, 419
SspMI CTAG 4 cut(s) 48, 105, 147, 386
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 334, 444
TasI AATT 1 cut(s) 41
TauI GCSGC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseI GCWGC 2 cut(s) 296, 425
TspGWI ACGGA 1 cut(s) 462
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 2 cut(s) 326, 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 4 cut(s) 48, 105, 147, 386
ZraI GACGTC 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.