Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Reverse (-)

31448938 .. 31451709

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1174300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAGAAAAACCGTCCGGTTCGCCGGCGAGCTTCATCGACAAGCCAGTGATTCCCGGCGATGTGGTTCTCGACCTCTCCGACATGACTAACCAAACCATCAAGCTCGGCGGCGGTCTCCGCCAGGCTGGTACTTTGAGGTTTACGAAGCCTAACAAGTATTGGGTCGAAACATCTCAGAAAAGGTATGTGCCTTGTGTGGGGGACTCGGTACTTGGAATCGTGGCGGATTCGAGAGCAGATAATTTTCTGGTGGACATTAAAGGACCTACATTGGCGTATCTGCCGGTGCTTGCTTTCGAAGGAGGAACTAGGCGAAACATACCAAAGTTTGAGGTGGGTACATTGCTGTATGTTCGGGTTGTGAAGGCAAACCCTGGCATGAATCCTGAGTTGTCATGCACTGATGCCAGTGGAAAAGCAGCAGAGTATGGTGTCCTTAAAGATGGCTACAATTTTGACTGTTCGACTGGCCTTTCAAGAATGTTGCTGAGATCGCCAAGATGTCCAGTTCTCGAGGAACTTGGGAAGAAAATTTCCTTTGAAATAGCAGTTGGTTTGAACGGCCGTGTTTGGGTCAATGCTGGTTCGCCATCTTTGATCATCGTCGTTTCTAATGCAATCATGAACTCGGAATCTCTGACTGGAGTGCAGCAGAGAATCATGGTGGATAAACTCATTCAGAATTTGAAGTTATCAAGTTACGTGACAATGCAAGACCTGCAAGCTTTGCAGCTGTCAAACTCACCCGTTATGTTTTCCAGAAGACGTTTTGTGGCGAGGGTTAAGAAGACAATGAAATCCCGCGATCACAATCTCATATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

276

Amino Acids

30.16

Weight (kDa)

9.43

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP40_S1	PF21262	63 - 145	2.8e-27	Exosome complex component RRP40, S1 domain
KH_6	PF15985	150 - 198	1.6e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	729
AccII	CGCG	1 cut(s)	807
AciI	CCGC	5 cut(s)	111, 114, 121, 227, 805
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	534, 685
AfaI	GTAC	3 cut(s)	133, 213, 343
AfiI	CCNNNNNNNGG	2 cut(s)	200, 574
AgsI	TTSAA	4 cut(s)	480, 545, 562, 691
AjnI	CCWGG	2 cut(s)	123, 376
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	4 cut(s)	33, 106, 728, 736
AluI	AGCT	4 cut(s)	33, 106, 728, 736
Alw26I	GTCTC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	472, 565
ApeKI	GCWGC	3 cut(s)	422, 652, 733
ApoI	RAATTY	2 cut(s)	534, 685
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	738
AsuII	TTCGAA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	266
BbsI	GAAGAC	2 cut(s)	772, 797
BbvI	GCAGC	3 cut(s)	434, 664, 745
BccI	CCATC	3 cut(s)	107, 440, 601
BceAI	ACGGC	2 cut(s)	552, 580
BciT130I	CCWGG	2 cut(s)	125, 378
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	729
BisI	GCNGC	4 cut(s)	112, 423, 653, 734
BlsI	GCNGC	4 cut(s)	113, 424, 654, 735
Bme1390I	CCNGG	3 cut(s)	57, 125, 378
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	3 cut(s)	57, 125, 378
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	772, 797
BpmI	CTGGAG	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	706
BsaBI	GATNNNNATC	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 574
Bse118I	RCCGGY	2 cut(s)	25, 286
Bse1I	ACTGG	5 cut(s)	47, 411, 475, 509, 649
Bse3DI	GCAATG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	813
BseBI	CCWGG	2 cut(s)	125, 378
BseDI	CCNNGG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	2 cut(s)	200, 574
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	3 cut(s)	191, 381, 482
BseNI	ACTGG	5 cut(s)	47, 411, 475, 509, 649
BseX3I	CGGCCG	1 cut(s)	565
BseXI	GCAGC	3 cut(s)	434, 664, 745
BsgI	GTGCAG	1 cut(s)	671
Bsh1236I	CGCG	1 cut(s)	807
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	474, 567
BsiEI	CGRYCG	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	4 cut(s)	18, 26, 57, 287
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	200, 574
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	474, 567
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	494, 600, 808
BspACI	CCGC	5 cut(s)	111, 114, 121, 227, 805
BspANI	GGCC	2 cut(s)	474, 567
BspCNI	CTCAG	3 cut(s)	190, 382, 483
BspFNI	CGCG	1 cut(s)	807
BspHI	TCATGA	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	729
BspT104I	TTCGAA	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	25, 286
BsrI	ACTGG	5 cut(s)	47, 411, 475, 509, 649
BssAI	RCCGGY	2 cut(s)	25, 286
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	3 cut(s)	494, 600, 808
Bst2UI	CCWGG	2 cut(s)	125, 378
Bst4CI	ACNGT	2 cut(s)	15, 464
BstAPI	GCANNNNNTGC	2 cut(s)	721, 730
BstBAI	YACGTR	1 cut(s)	706
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	4 cut(s)	27, 31, 294, 726
BstDEI	CTNAG	3 cut(s)	177, 390, 491
BstFNI	CGCG	1 cut(s)	807
BstKTI	GATC	3 cut(s)	497, 603, 811
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	494, 600, 808
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 496, 721, 730
BstNI	CCWGG	2 cut(s)	125, 378
BstSCI	CCNGG	3 cut(s)	55, 123, 376
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	3 cut(s)	434, 664, 745
BstV2I	GAAGAC	2 cut(s)	772, 797
BstZI	CGGCCG	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	474, 567
BtgZI	GCGATG	1 cut(s)	75
BtsIMutI	CAGTG	3 cut(s)	54, 402, 418
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	4 cut(s)	27, 31, 294, 726
CciI	TCATGA	1 cut(s)	624
Cfr10I	RCCGGY	2 cut(s)	25, 286
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	132, 212, 342
CviAII	CATG	5 cut(s)	85, 382, 399, 625, 664
CviQI	GTAC	3 cut(s)	132, 212, 342
DdeI	CTNAG	3 cut(s)	177, 390, 491
DpnI	GATC	3 cut(s)	496, 602, 810
DpnII	GATC	3 cut(s)	494, 600, 808
EaeI	YGGCCR	1 cut(s)	565
EagI	CGGCCG	1 cut(s)	565
EciI	GGCGGA	2 cut(s)	110, 242
EclXI	CGGCCG	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	266
Eco52I	CGGCCG	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	123, 376
FaeI	CATG	5 cut(s)	88, 385, 402, 628, 667
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	5 cut(s)	84, 381, 398, 624, 663
FauI	CCCGC	1 cut(s)	812
FauNDI	CATATG	1 cut(s)	821
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	4 cut(s)	112, 423, 653, 734
Fsp4HI	GCNGC	4 cut(s)	112, 423, 653, 734
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	4 cut(s)	112, 423, 653, 734
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	474, 567
HapII	CCGG	4 cut(s)	18, 26, 57, 287
Hin1II	CATG	5 cut(s)	88, 385, 402, 628, 667
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	7 cut(s)	52, 206, 219, 230, 385, 635, 660
HpaII	CCGG	4 cut(s)	18, 26, 57, 287
HphI	GGTGA	1 cut(s)	738
Hpy166II	GTNNAC	2 cut(s)	144, 256
Hpy188I	TCNGA	5 cut(s)	82, 180, 634, 642, 684
Hpy188III	TCNNGA	7 cut(s)	71, 234, 389, 480, 515, 625, 762
Hpy8I	GTNNAC	2 cut(s)	144, 256
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	2 cut(s)	296, 361
HpyCH4III	ACNGT	2 cut(s)	15, 464
HpyCH4IV	ACGT	2 cut(s)	705, 769
HpyCH4V	TGCA	6 cut(s)	402, 620, 652, 715, 724, 733
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 496, 721, 730
HpyF3I	CTNAG	3 cut(s)	177, 390, 491
HpySE526I	ACGT	2 cut(s)	705, 769
Hsp92II	CATG	5 cut(s)	88, 385, 402, 628, 667
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	3 cut(s)	494, 600, 808
Lsp1109I	GCAGC	3 cut(s)	434, 664, 745
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	705, 769
MaeIII	GTNAC	2 cut(s)	701, 706
MalI	GATC	3 cut(s)	496, 602, 810
MboI	GATC	3 cut(s)	494, 600, 808
MboII	GAAGA	4 cut(s)	17, 541, 777, 802
MluCI	AATT	4 cut(s)	244, 454, 534, 685
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	86, 132, 299, 328, 511, 774
MreI	CGCCGGCG	1 cut(s)	25
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	3 cut(s)	261, 441, 786
MspA1I	CMGCKG	1 cut(s)	736
MspI	CCGG	4 cut(s)	18, 26, 57, 287
MspR9I	CCNGG	3 cut(s)	57, 125, 378
MvaI	CCWGG	2 cut(s)	125, 378
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	4 cut(s)	120, 496, 721, 730
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	821
NdeII	GATC	3 cut(s)	494, 600, 808
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	5 cut(s)	88, 385, 402, 628, 667
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	706
NspV	TTCGAA	1 cut(s)	300
PaeR7I	CTCGAG	1 cut(s)	515
PagI	TCATGA	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	6 cut(s)	52, 219, 230, 385, 635, 660
PkrI	GCNGC	4 cut(s)	113, 424, 654, 735
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	706
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	123, 376
PspGI	CCWGG	2 cut(s)	123, 376
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	3 cut(s)	133, 213, 343
RsaNI	GTAC	3 cut(s)	132, 212, 342
SaqAI	TTAA	3 cut(s)	261, 441, 786
SatI	GCNGC	4 cut(s)	112, 423, 653, 734
Sau3AI	GATC	3 cut(s)	494, 600, 808
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	57, 125, 378
SfaNI	GCATC	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	515
SfuI	TTCGAA	1 cut(s)	300
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	4 cut(s)	244, 454, 534, 685
SsiI	CCGC	5 cut(s)	111, 114, 121, 227, 805
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	55, 123, 376
TaaI	ACNGT	2 cut(s)	15, 464
TaiI	ACGT	2 cut(s)	708, 772
TaqI	TCGA	7 cut(s)	39, 72, 168, 233, 300, 467, 516
TasI	AATT	4 cut(s)	244, 454, 534, 685
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	6 cut(s)	52, 219, 230, 385, 635, 660
Tru1I	TTAA	3 cut(s)	261, 441, 786
Tru9I	TTAA	3 cut(s)	261, 441, 786
TscAI	CASTG	3 cut(s)	54, 409, 418
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	3 cut(s)	422, 652, 733
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	4 cut(s)	25, 398, 641, 812
TspRI	CASTG	3 cut(s)	54, 409, 418
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	534, 685
XhoI	CTCGAG	1 cut(s)	515
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.