AT2G26000

BRCA1-associated protein 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
11081156 .. 11085382
4227 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26000.1

Sequence Viewer

Length: 1386 bp
ATGAACTCGGCAAGCGTTTCCGGTGAATCCTCTCTCTCCGATATGATTCAGACAGTTCATTTTTCCTCTGGAAACCCTAGAATCGGCGAGACTCGCGGTGTCATGCATCTAATTTCCGACAATGCTGTTTCGTCATCTTCTTCTTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCAGCACATACTGGATATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAGCATTTTGATAAGGTTTGATAGTCAGGAATCTACCGATACATTCTTCCAGCATTTCAGAGGGAAACAGTTCAACTCTCTGGACGAAGATGTCTGTCGCCTGCTTTTTGCTCTTGATGTTCAGTTTACCGGTTATAGTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGAGCAACCTACTTGCCCAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAGTTTGTCGATATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGAAGGACATGCCAGAAGGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGGATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAACTGATGGCAAGCTAGTGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTGACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATGTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCTGCGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGGTCCAGGACGCCACTGTCTCGACCACCAATACCTCTTCTTCTGGGGCAGGGAATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAG

Protein Analysis

461

Amino Acids

51.63

Weight (kDa)

5.52

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRAP2 PF07576 55 - 147 6.4e-35 BRCA1-associated protein 2
zf-RING_2 PF13639 166 - 207 1.2e-07 Ring finger domain
zf-UBP PF02148 218 - 277 4.2e-22 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013575)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 395, 1082, 1301
AccB1I GGYRCC 1 cut(s) 199
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 96, 240, 714
AclWI GGATC 2 cut(s) 441, 454
AcoI YGGCCR 1 cut(s) 593
AcsI RAATTY 2 cut(s) 643, 871
AcyI GRCGYC 1 cut(s) 1296
AdeI CACNNNGTG 1 cut(s) 794
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 2 cut(s) 83, 670
AflIII ACRYGT 2 cut(s) 793, 963
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 8 cut(s) 296, 379, 785, 839, 871, 974, 1106, 1114
AjnI CCWGG 2 cut(s) 1067, 1290
AjuI GAANNNNNNNTTGG 2 cut(s) 1215, 1247
AluBI AGCT 6 cut(s) 781, 859, 909, 1025, 1060, 1231
AluI AGCT 6 cut(s) 781, 859, 909, 1025, 1060, 1231
Alw21I GWGCWC 1 cut(s) 1151
Alw26I GTCTC 6 cut(s) 83, 749, 1042, 1271, 1276, 1309
AlwI GGATC 2 cut(s) 441, 454
AlwNI CAGNNNCTG 3 cut(s) 1025, 1051, 1060
AoxI GGCC 3 cut(s) 478, 593, 1245
ApeKI GCWGC 4 cut(s) 473, 711, 1025, 1060
ApoI RAATTY 2 cut(s) 643, 871
ArsI GACNNNNNNTTYG 2 cut(s) 953, 985
AsiGI ACCGGT 1 cut(s) 434
Asp700I GAANNNNTTC 2 cut(s) 374, 1209
AspS9I GGNCC 4 cut(s) 479, 523, 1246, 1288
AsuHPI GGTGA 4 cut(s) 35, 818, 824, 1271
AvaII GGWCC 2 cut(s) 523, 1288
BaeGI GKGCMC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 595
BamHI GGATCC 1 cut(s) 446
BanI GGYRCC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 1151
BbvI GCAGC 4 cut(s) 460, 698, 1012, 1047
BccI CCATC 3 cut(s) 845, 890, 1250
BciT130I CCWGG 2 cut(s) 1069, 1292
BcoDI GTCTC 6 cut(s) 83, 749, 1042, 1271, 1276, 1309
BfaI CTAG 2 cut(s) 78, 860
BfmI CTRYAG 1 cut(s) 1052
BisI GCNGC 5 cut(s) 241, 474, 712, 1026, 1061
BlsI GCNGC 5 cut(s) 242, 475, 713, 1027, 1062
Bme1390I CCNGG 2 cut(s) 1069, 1292
Bme18I GGWCC 2 cut(s) 523, 1288
BmgT120I GGNCC 4 cut(s) 479, 523, 1246, 1288
BmiI GGNNCC 4 cut(s) 176, 201, 244, 448
BmrFI CCNGG 2 cut(s) 1069, 1292
BmrI ACTGGG 3 cut(s) 497, 605, 757
BmsI GCATC 2 cut(s) 115, 928
BmuI ACTGGG 3 cut(s) 497, 605, 757
BpuEI CTTGAG 2 cut(s) 533, 797
BsaHI GRCGYC 1 cut(s) 1296
BsaWI WCCGGW 2 cut(s) 20, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 670
Bse118I RCCGGY 2 cut(s) 434, 828
Bse1I ACTGG 5 cut(s) 232, 267, 503, 611, 752
Bse3DI GCAATG 2 cut(s) 571, 763
BseBI CCWGG 2 cut(s) 1069, 1292
BseGI GGATG 4 cut(s) 690, 901, 1207, 1261
BseLI CCNNNNNNNGG 2 cut(s) 83, 670
BseMI GCAATG 2 cut(s) 571, 763
BseMII CTCAG 3 cut(s) 878, 1032, 1287
BseNI ACTGG 5 cut(s) 232, 267, 503, 611, 752
BseRI GAGGAG 3 cut(s) 139, 142, 767
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 4 cut(s) 460, 698, 1012, 1047
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 480, 595, 1247
BshNI GGYRCC 1 cut(s) 199
BshTI ACCGGT 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 1151
BsiSI CCGG 3 cut(s) 21, 435, 829
BslI CCNNNNNNNGG 2 cut(s) 83, 670
BsmAI GTCTC 6 cut(s) 83, 749, 1042, 1271, 1276, 1309
BsmBI CGTCTC 1 cut(s) 1271
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 3 cut(s) 480, 595, 1247
Bsp1286I GDGCHC 2 cut(s) 204, 1151
Bsp143I GATC 1 cut(s) 446
BspACI CCGC 3 cut(s) 96, 240, 714
BspANI GGCC 3 cut(s) 480, 595, 1247
BspCNI CTCAG 3 cut(s) 879, 1031, 1286
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 176, 201, 244, 448
BspMAI CTGCAG 1 cut(s) 1056
BspPI GGATC 2 cut(s) 441, 454
BspT107I GGYRCC 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 571, 763
BsrFI RCCGGY 2 cut(s) 434, 828
BsrI ACTGG 5 cut(s) 232, 267, 503, 611, 752
BssAI RCCGGY 2 cut(s) 434, 828
BssMI GATC 1 cut(s) 446
BssNI GRCGYC 1 cut(s) 1296
Bst2UI CCWGG 2 cut(s) 1069, 1292
Bst4CI ACNGT 5 cut(s) 55, 277, 375, 926, 1303
Bst6I CTCTTC 2 cut(s) 1327, 1358
BstACI GRCGYC 1 cut(s) 1296
BstAPI GCANNNNNTGC 1 cut(s) 1060
BstC8I GCNNGC 5 cut(s) 13, 407, 478, 857, 1030
BstDEI CTNAG 4 cut(s) 887, 1018, 1219, 1273
BstF5I GGATG 4 cut(s) 690, 901, 1207, 1261
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 1 cut(s) 449
BstMAI GTCTC 6 cut(s) 83, 749, 1042, 1271, 1276, 1309
BstMBI GATC 1 cut(s) 446
BstMWI GCNNNNNNNGC 5 cut(s) 93, 237, 1034, 1060, 1193
BstNI CCWGG 2 cut(s) 1069, 1292
BstNSI RCATGY 3 cut(s) 737, 967, 1352
BstSCI CCNGG 2 cut(s) 1067, 1290
BstSFI CTRYAG 1 cut(s) 1052
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 460, 698, 1012, 1047
BstX2I RGATCY 1 cut(s) 446
BstXI CCANNNNNNTGG 1 cut(s) 1256
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 3 cut(s) 480, 595, 1247
BtsCI GGATG 4 cut(s) 690, 901, 1207, 1261
BtsIMutI CAGTG 4 cut(s) 510, 745, 931, 1299
Cac8I GCNNGC 5 cut(s) 13, 407, 478, 857, 1030
CaiI CAGNNNCTG 3 cut(s) 1025, 1051, 1060
Cfr10I RCCGGY 2 cut(s) 434, 828
Cfr13I GGNCC 4 cut(s) 479, 523, 1246, 1288
CseI GACGC 1 cut(s) 1304
CsiI ACCWGGT 1 cut(s) 1067
Csp6I GTAC 1 cut(s) 721
CspAI ACCGGT 1 cut(s) 434
CviAII CATG 8 cut(s) 103, 211, 553, 579, 734, 878, 964, 1349
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 4 cut(s) 887, 1018, 1219, 1273
DpnI GATC 1 cut(s) 448
DpnII GATC 1 cut(s) 446
DraIII CACNNNGTG 1 cut(s) 794
DrdI GACNNNNNNGTC 3 cut(s) 395, 1082, 1301
DseDI GACNNNNNNGTC 3 cut(s) 395, 1082, 1301
EaeI YGGCCR 1 cut(s) 593
Eam1104I CTCTTC 2 cut(s) 1327, 1358
EarI CTCTTC 2 cut(s) 1327, 1358
Eco47I GGWCC 2 cut(s) 523, 1288
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 2 cut(s) 1067, 1290
EcoT22I ATGCAT 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 1271
FaeI CATG 8 cut(s) 106, 214, 556, 582, 737, 881, 967, 1352
FalI AAGNNNNNCTT 2 cut(s) 1215, 1247
FatI CATG 8 cut(s) 102, 210, 552, 578, 733, 877, 963, 1348
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 5 cut(s) 241, 474, 712, 1026, 1061
FokI GGATG 4 cut(s) 697, 908, 1214, 1268
Fsp4HI GCNGC 5 cut(s) 241, 474, 712, 1026, 1061
FspBI CTAG 2 cut(s) 78, 860
GluI GCNGC 5 cut(s) 241, 474, 712, 1026, 1061
HaeIII GGCC 3 cut(s) 480, 595, 1247
HapII CCGG 3 cut(s) 21, 435, 829
HgaI GACGC 1 cut(s) 1304
Hin1I GRCGYC 1 cut(s) 1296
Hin1II CATG 8 cut(s) 106, 214, 556, 582, 737, 881, 967, 1352
HinfI GANTC 9 cut(s) 26, 46, 81, 91, 157, 335, 599, 676, 1210
HpaII CCGG 3 cut(s) 21, 435, 829
HphI GGTGA 4 cut(s) 35, 818, 824, 1271
Hpy166II GTNNAC 3 cut(s) 432, 826, 961
Hpy188I TCNGA 8 cut(s) 40, 51, 118, 365, 888, 922, 1021, 1276
Hpy8I GTNNAC 3 cut(s) 432, 826, 961
HpyAV CCTTC 8 cut(s) 165, 256, 477, 577, 711, 722, 735, 1177
HpyCH4III ACNGT 5 cut(s) 55, 277, 375, 926, 1303
HpyCH4IV ACGT 2 cut(s) 793, 1140
HpyCH4V TGCA 6 cut(s) 106, 221, 558, 1054, 1063, 1352
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 237, 1034, 1060, 1193
HpyF3I CTNAG 4 cut(s) 887, 1018, 1219, 1273
HpySE526I ACGT 2 cut(s) 793, 1140
Hsp92I GRCGYC 1 cut(s) 1296
Hsp92II CATG 8 cut(s) 106, 214, 556, 582, 737, 881, 967, 1352
Kzo9I GATC 1 cut(s) 446
LmnI GCTCC 2 cut(s) 248, 1146
Lsp1109I GCAGC 4 cut(s) 460, 698, 1012, 1047
LweI GCATC 2 cut(s) 115, 928
MabI ACCWGGT 1 cut(s) 1067
MaeI CTAG 2 cut(s) 78, 860
MaeII ACGT 2 cut(s) 793, 1140
MaeIII GTNAC 2 cut(s) 812, 1367
MalI GATC 1 cut(s) 448
MboI GATC 1 cut(s) 446
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 2 cut(s) 204, 1151
MlsI TGGCCA 1 cut(s) 595
MluCI AATT 6 cut(s) 111, 589, 643, 817, 871, 1097
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 595
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 2 cut(s) 374, 1209
MscI TGGCCA 1 cut(s) 595
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 595
MspI CCGG 3 cut(s) 21, 435, 829
MspR9I CCNGG 2 cut(s) 1069, 1292
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 2 cut(s) 1069, 1292
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 5 cut(s) 93, 237, 1034, 1060, 1193
NdeI CATATG 1 cut(s) 217
NdeII GATC 1 cut(s) 446
NlaIII CATG 8 cut(s) 106, 214, 556, 582, 737, 881, 967, 1352
NlaIV GGNNCC 4 cut(s) 176, 201, 244, 448
NmuCI GTSAC 1 cut(s) 812
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 3 cut(s) 737, 967, 1352
PciI ACATGT 1 cut(s) 963
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 2 cut(s) 374, 1209
PfeI GAWTC 8 cut(s) 26, 46, 81, 157, 335, 599, 676, 1210
PfoI TCCNGGA 1 cut(s) 1290
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 5 cut(s) 242, 475, 713, 1027, 1062
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PscI ACATGT 1 cut(s) 963
Psp6I CCWGG 2 cut(s) 1067, 1290
PspGI CCWGG 2 cut(s) 1067, 1290
PspN4I GGNNCC 4 cut(s) 176, 201, 244, 448
PspPI GGNCC 4 cut(s) 479, 523, 1246, 1288
PstI CTGCAG 1 cut(s) 1056
PstNI CAGNNNCTG 3 cut(s) 1025, 1051, 1060
PsuI RGATCY 1 cut(s) 446
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 1 cut(s) 551
SatI GCNGC 5 cut(s) 241, 474, 712, 1026, 1061
Sau3AI GATC 1 cut(s) 446
Sau96I GGNCC 4 cut(s) 479, 523, 1246, 1288
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 1069, 1292
SduI GDGCHC 2 cut(s) 204, 1151
SexAI ACCWGGT 1 cut(s) 1067
SfaNI GCATC 2 cut(s) 115, 928
SfcI CTRYAG 1 cut(s) 1052
SinI GGWCC 2 cut(s) 523, 1288
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 512, 776
SmoI CTYRAG 2 cut(s) 512, 776
Sse9I AATT 6 cut(s) 111, 589, 643, 817, 871, 1097
SsiI CCGC 3 cut(s) 96, 240, 714
SspI AATATT 1 cut(s) 917
SspMI CTAG 2 cut(s) 78, 860
StyD4I CCNGG 2 cut(s) 1067, 1290
TaaI ACNGT 5 cut(s) 55, 277, 375, 926, 1303
TaiI ACGT 2 cut(s) 796, 1143
TaqI TCGA 3 cut(s) 155, 619, 1307
TasI AATT 6 cut(s) 111, 589, 643, 817, 871, 1097
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 8 cut(s) 26, 46, 81, 157, 335, 599, 676, 1210
TscAI CASTG 4 cut(s) 510, 752, 931, 1306
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 4 cut(s) 473, 711, 1025, 1060
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 5 cut(s) 17, 47, 238, 1181, 1218
TspGWI ACGGA 2 cut(s) 686, 1019
TspRI CASTG 4 cut(s) 510, 752, 931, 1306
VpaK11BI GGWCC 2 cut(s) 523, 1288
XapI RAATTY 2 cut(s) 643, 871
XceI RCATGY 3 cut(s) 737, 967, 1352
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmnI GAANNNNTTC 2 cut(s) 374, 1209
XspI CTAG 2 cut(s) 78, 860
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.