Rw2G029830

Brca1-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013575
Physical Location & Seq
Reverse (-)
48381875 .. 48385885
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029830.1

Sequence Viewer

Length: 1371 bp
ATGTCGCCGAGCTCGAGCACAGCACGTGCCGGAGCCTCGCCGGTCGAGGCCTTCAGGTCGCCGCCTTCGATAACTCCCGGCGAGCCTAGCGACTTCTCCTGTTCCTCCTCTTCATCCTCCATCTCAAACATCACGCAGGCCTTTCCTTTCTCTTCTGGAAACCCTAGAATTGAAGAGACCAGAGGCATCATGCTCCTCTACCGCGACGATGACGTCGTTTCGTTCTCTCCGTCTAATCTTCCTGTTGAAAGGAAGCCGCTTGTTTGCGTACTTGGAGTGCCGAATCACATGACATATGCTGACTTCTGTAGATTCTGTGGTTCCTTCATTCAGCATATATTGGAGATGCGGATTGTCAGGACCGATGGAATGGAGGATCGTTATAGCATTTTGATTAGGTTTGACAGTCAGGACTCCACAGATCATTTTTACAAGCACTTCAATCGGACCCGGTTCTCATCACTAGAGGTGGAGGTCTGTCGCATACTTTTCACGGTAGATGTTCAATACACTGGTTCAATAGAACATGCACAGGCATCCCTCTGTAGCTCAACTGAGCAGCCATCATGTCCAGTCTGTCTTGAGAGACTAGACCAAGATATGAGTGGAATTCTGACAACTATCTGCAATCATTCTTTCCATTGCTCTTGCATTTCAAAATGGACCGATTCTTCTTGTCCTGTATGTCGATATTGTCAGCAGCAGCCTGAAAAGTCCAACTGTTTCATTTGTCAAACTTCTGAGAATCTCTGGATGTGTATTATCTGTGGCTTTGTTGGTTGTGGGAGGTATAAAGAAGGGCATGCCATAAGACATTGGAAAGAAACACAACATTGCTATTCCCTTGAAGTGGAAACGCAGCGTGTGTGGGATTATGCAGGAGACAATTATGTTCACCGCCTAATTCAATCTAAAACTGATGGAAAATTGGTTGAATTGAATTCACACTGTCGGAATGCGATGATTTCAAAGGAAGTTGCGAGTATTGTTAATGAGTACAACGAACTGCTTGCTACTCAACTTGAGAACCAAAAAATGAGAAATTCTAAAGCTGTAGAAAAGGCTGTGCCAGTAAAGAAAATGCAGGACAAGCTGGATAGATGTGTAAATGAGAAGAAATTTCTGGATGAGCTTAATGATAATCTTTTGAAAAATCGAGAAGCTTGGAAAGCAAAGATACTTGAAGTTGAAGAGAGGGAGAGAAGGGCTTCAAAACTGAAGGAAGATAAAATAAGCAACTTAGAAGAGCAGCTCAGGAATTTGATGCTGTACCTCGAGACAGGGAATACAGTAGAGTCTTCAAATGAAACAAAGAATGATAATGTCTTGCCAGTATCGATCAACTCATCTCAGCCATCCAATATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
BRAP2 zf-RING_2 zf-UBP

Protein Analysis

456

Amino Acids

51.91

Weight (kDa)

6.0

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRAP2 PF07576 80 - 177 2.8e-38 BRCA1-associated protein 2
zf-rbx1 PF12678 180 - 230 3.8e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 189 - 230 1.7e-08 Ring finger domain
zf-C3HC4 PF00097 190 - 229 1.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-UBP PF02148 241 - 300 8.3e-23 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013575)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26000 AT2G26000 AT2G26000
fragaria_vesca FvH4_6g29040
malus_domestica MD17G1218900.v1.1
prunus_persica Prupe.3G094400_v2.0.a1 Prupe.3G094400_v2.0.a1
pyrus_communis pycom17g22370
rosa_chinensis RchiOBHm_Chr2g0133711
rosa_laevigata RLG00000019358
rosa_multiflora Rmu_sc0013154.1_g000008
rosa_roxburghii Rroxscaffold_2G00110880
rosa_rugosa Rorug02G0313200
rosa_samantha Rh2AG366600 Rh2BG372300 Rh2CG349900 Rh2DG389200
rosa_wichuraiana Rw2G029830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 216
AccII CGCG 1 cut(s) 204
AciI CCGC 5 cut(s) 62, 202, 257, 349, 898
AclWI GGATC 1 cut(s) 384
AcsI RAATTY 5 cut(s) 609, 940, 1042, 1118, 1258
AcuI CTGAAG 2 cut(s) 37, 1238
AcvI CACGTG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 3 cut(s) 270, 998, 1271
AfiI CCNNNNNNNGG 1 cut(s) 850
AluBI AGCT 7 cut(s) 12, 549, 1052, 1093, 1132, 1163, 1252
AluI AGCT 7 cut(s) 12, 549, 1052, 1093, 1132, 1163, 1252
Alw21I GWGCWC 2 cut(s) 14, 20
Alw26I GTCTC 4 cut(s) 170, 580, 876, 1271
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 2 cut(s) 13, 1274
AoxI GGCC 2 cut(s) 48, 138
ApeKI GCWGC 5 cut(s) 559, 700, 703, 859, 1249
ApoI RAATTY 5 cut(s) 609, 940, 1042, 1118, 1258
Asp700I GAANNNNTTC 1 cut(s) 1207
AspS9I GGNCC 3 cut(s) 360, 447, 663
AsuC2I CCSGG 2 cut(s) 78, 451
AsuHPI GGTGA 1 cut(s) 887
AvaI CYCGRG 2 cut(s) 13, 1274
AvaII GGWCC 3 cut(s) 360, 447, 663
BanII GRGCYC 1 cut(s) 14
BbrPI CACGTG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 1290
Bbv12I GWGCWC 2 cut(s) 14, 20
BbvI GCAGC 5 cut(s) 571, 712, 715, 871, 1261
BccI CCATC 5 cut(s) 128, 359, 571, 914, 1363
BcgI CGANNNNNNTGC 4 cut(s) 425, 459, 992, 1026
BcnI CCSGG 2 cut(s) 78, 451
BcoDI GTCTC 4 cut(s) 170, 580, 876, 1271
BfaI CTAG 4 cut(s) 87, 165, 464, 590
BfmI CTRYAG 3 cut(s) 307, 544, 1053
BisI GCNGC 7 cut(s) 62, 257, 560, 701, 704, 860, 1250
BlsI GCNGC 7 cut(s) 63, 258, 561, 702, 705, 861, 1251
Bme1390I CCNGG 2 cut(s) 78, 451
Bme18I GGWCC 3 cut(s) 360, 447, 663
BmeT110I CYCGRG 2 cut(s) 13, 1274
BmgT120I GGNCC 3 cut(s) 360, 447, 663
BmiI GGNNCC 3 cut(s) 34, 322, 449
BmrFI CCNGG 2 cut(s) 78, 451
BmsI GCATC 4 cut(s) 195, 336, 545, 1254
BpiI GAAGAC 1 cut(s) 1290
Bpu10I CCTNAGC 1 cut(s) 1253
BpuEI CTTGAG 2 cut(s) 602, 1043
BpuMI CCSGG 2 cut(s) 78, 451
Bsa29I ATCGAT 1 cut(s) 1337
BsaAI YACGTR 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 850
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 4 cut(s) 517, 572, 1070, 1331
Bse3DI GCAATG 2 cut(s) 640, 832
BseCI ATCGAT 1 cut(s) 1337
BseGI GGATG 5 cut(s) 113, 536, 759, 1132, 1355
BseLI CCNNNNNNNGG 1 cut(s) 850
BseMI GCAATG 2 cut(s) 640, 832
BseMII CTCAG 4 cut(s) 546, 732, 1267, 1364
BseNI ACTGG 4 cut(s) 517, 572, 1070, 1331
BseRI GAGGAG 2 cut(s) 97, 185
BseXI GCAGC 5 cut(s) 571, 712, 715, 871, 1261
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 50, 140
BshVI ATCGAT 1 cut(s) 1337
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 14, 20
BsiHKCI CYCGRG 2 cut(s) 13, 1274
BsiSI CCGG 4 cut(s) 30, 41, 78, 451
BslI CCNNNNNNNGG 1 cut(s) 850
BsmAI GTCTC 4 cut(s) 170, 580, 876, 1271
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 2 cut(s) 50, 140
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 2 cut(s) 13, 1274
Bsp1286I GDGCHC 2 cut(s) 14, 20
Bsp143I GATC 3 cut(s) 376, 421, 1338
BspACI CCGC 5 cut(s) 62, 202, 257, 349, 898
BspANI GGCC 2 cut(s) 50, 140
BspCNI CTCAG 4 cut(s) 547, 733, 1266, 1363
BspDI ATCGAT 1 cut(s) 1337
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 34, 322, 449
BspPI GGATC 1 cut(s) 384
BspQI GCTCTTC 1 cut(s) 1239
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 640, 832
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 4 cut(s) 517, 572, 1070, 1331
BssAI RCCGGY 1 cut(s) 40
BssMI GATC 3 cut(s) 376, 421, 1338
BssNI GRCGYC 1 cut(s) 213
Bst4CI ACNGT 5 cut(s) 407, 496, 722, 950, 1291
Bst6I CTCTTC 5 cut(s) 115, 157, 168, 1185, 1239
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 26
BstC8I GCNNGC 4 cut(s) 83, 138, 804, 1011
BstDEI CTNAG 5 cut(s) 555, 741, 1240, 1253, 1350
BstF5I GGATG 5 cut(s) 113, 536, 759, 1132, 1355
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 3 cut(s) 379, 424, 1341
BstMAI GTCTC 4 cut(s) 170, 580, 876, 1271
BstMBI GATC 3 cut(s) 376, 421, 1338
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 87, 1090, 1169
BstNSI RCATGY 2 cut(s) 530, 806
BstSCI CCNGG 2 cut(s) 76, 449
BstSFI CTRYAG 3 cut(s) 307, 544, 1053
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 5 cut(s) 571, 712, 715, 871, 1261
BstV2I GAAGAC 1 cut(s) 1290
Bsu15I ATCGAT 1 cut(s) 1337
BsuRI GGCC 2 cut(s) 50, 140
BsuTUI ATCGAT 1 cut(s) 1337
BtgZI GCGATG 1 cut(s) 974
BtsCI GGATG 5 cut(s) 113, 536, 759, 1132, 1355
BtsIMutI CAGTG 2 cut(s) 510, 946
Cac8I GCNNGC 4 cut(s) 83, 138, 804, 1011
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 360, 447, 663
ClaI ATCGAT 1 cut(s) 1337
Csp6I GTAC 3 cut(s) 269, 997, 1270
CviAII CATG 5 cut(s) 190, 289, 527, 567, 803
CviQI GTAC 3 cut(s) 269, 997, 1270
DdeI CTNAG 5 cut(s) 555, 741, 1240, 1253, 1350
DpnI GATC 3 cut(s) 378, 423, 1340
DpnII GATC 3 cut(s) 376, 421, 1338
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 5 cut(s) 115, 157, 168, 1185, 1239
EarI CTCTTC 5 cut(s) 115, 157, 168, 1185, 1239
Ecl136II GAGCTC 1 cut(s) 12
Eco147I AGGCCT 2 cut(s) 50, 140
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 3 cut(s) 360, 447, 663
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 37, 1238
Eco72I CACGTG 1 cut(s) 26
Eco88I CYCGRG 2 cut(s) 13, 1274
EcoICRI GAGCTC 1 cut(s) 12
EcoRI GAATTC 2 cut(s) 609, 940
EcoT38I GRGCYC 1 cut(s) 14
FaeI CATG 5 cut(s) 193, 292, 530, 570, 806
FatI CATG 5 cut(s) 189, 288, 526, 566, 802
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 7 cut(s) 62, 257, 560, 701, 704, 860, 1250
FokI GGATG 5 cut(s) 100, 523, 766, 1139, 1342
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 7 cut(s) 62, 257, 560, 701, 704, 860, 1250
FspBI CTAG 4 cut(s) 87, 165, 464, 590
GluI GCNGC 7 cut(s) 62, 257, 560, 701, 704, 860, 1250
HaeIII GGCC 2 cut(s) 50, 140
HapII CCGG 4 cut(s) 30, 41, 78, 451
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 5 cut(s) 193, 292, 530, 570, 806
HindIII AAGCTT 1 cut(s) 1161
HinfI GANTC 6 cut(s) 283, 312, 413, 668, 745, 1295
HpaII CCGG 4 cut(s) 30, 41, 78, 451
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 1 cut(s) 895
Hpy188I TCNGA 4 cut(s) 447, 615, 742, 954
Hpy188III TCNNGA 9 cut(s) 156, 358, 410, 581, 751, 1124, 1157, 1255, 1276
Hpy8I GTNNAC 1 cut(s) 895
Hpy99I CGWCG 2 cut(s) 209, 218
HpyAV CCTTC 6 cut(s) 61, 75, 334, 791, 1197, 1213
HpyCH4III ACNGT 5 cut(s) 407, 496, 722, 950, 1291
HpyCH4IV ACGT 2 cut(s) 25, 213
HpyCH4V TGCA 5 cut(s) 530, 627, 651, 878, 1084
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 1090, 1169
HpyF3I CTNAG 5 cut(s) 555, 741, 1240, 1253, 1350
HpySE526I ACGT 2 cut(s) 25, 213
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 5 cut(s) 193, 292, 530, 570, 806
Kzo9I GATC 3 cut(s) 376, 421, 1338
LguI GCTCTTC 1 cut(s) 1239
LmnI GCTCC 2 cut(s) 32, 198
Lsp1109I GCAGC 5 cut(s) 571, 712, 715, 871, 1261
LweI GCATC 4 cut(s) 195, 336, 545, 1254
MaeI CTAG 4 cut(s) 87, 165, 464, 590
MaeII ACGT 2 cut(s) 25, 213
MalI GATC 3 cut(s) 378, 423, 1340
MboI GATC 3 cut(s) 376, 421, 1338
MhlI GDGCHC 2 cut(s) 14, 20
MlyI GAGTC 2 cut(s) 407, 1304
MmeI TCCRAC 2 cut(s) 741, 932
MroXI GAANNNNTTC 1 cut(s) 1207
MseI TTAA 2 cut(s) 990, 1134
MspI CCGG 4 cut(s) 30, 41, 78, 451
MspR9I CCNGG 2 cut(s) 78, 451
Mva1269I GAATGC 1 cut(s) 961
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 87, 1090, 1169
NciI CCSGG 2 cut(s) 78, 451
NdeI CATATG 1 cut(s) 295
NdeII GATC 3 cut(s) 376, 421, 1338
NlaIII CATG 5 cut(s) 193, 292, 530, 570, 806
NlaIV GGNNCC 3 cut(s) 34, 322, 449
NmeAIII GCCGAG 1 cut(s) 33
NspI RCATGY 2 cut(s) 530, 806
PaeI GCATGC 1 cut(s) 806
PaeR7I CTCGAG 2 cut(s) 13, 1274
PceI AGGCCT 2 cut(s) 50, 140
PciSI GCTCTTC 1 cut(s) 1239
PcsI WCGNNNNNNNCGW 4 cut(s) 11, 65, 213, 227
PctI GAATGC 1 cut(s) 961
PdmI GAANNNNTTC 1 cut(s) 1207
PfeI GAWTC 4 cut(s) 283, 312, 668, 745
PkrI GCNGC 7 cut(s) 63, 258, 561, 702, 705, 861, 1251
PleI GAGTC 2 cut(s) 407, 1303
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
PpsI GAGTC 2 cut(s) 407, 1303
Ppu21I YACGTR 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 14
PspCI CACGTG 1 cut(s) 26
PspN4I GGNNCC 3 cut(s) 34, 322, 449
PspPI GGNCC 3 cut(s) 360, 447, 663
PspXI VCTCGAGB 1 cut(s) 13
RsaI GTAC 3 cut(s) 270, 998, 1271
RsaNI GTAC 3 cut(s) 269, 997, 1270
SacI GAGCTC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 1239
SaqAI TTAA 2 cut(s) 990, 1134
SatI GCNGC 7 cut(s) 62, 257, 560, 701, 704, 860, 1250
Sau3AI GATC 3 cut(s) 376, 421, 1338
Sau96I GGNCC 3 cut(s) 360, 447, 663
SchI GAGTC 2 cut(s) 407, 1304
ScrFI CCNGG 2 cut(s) 78, 451
SduI GDGCHC 2 cut(s) 14, 20
SfaNI GCATC 4 cut(s) 195, 336, 545, 1254
SfcI CTRYAG 3 cut(s) 307, 544, 1053
Sfr274I CTCGAG 2 cut(s) 13, 1274
SinI GGWCC 3 cut(s) 360, 447, 663
SlaI CTCGAG 2 cut(s) 13, 1274
SmlI CTYRAG 4 cut(s) 13, 581, 1022, 1274
SmoI CTYRAG 4 cut(s) 13, 581, 1022, 1274
SphI GCATGC 1 cut(s) 806
SseBI AGGCCT 2 cut(s) 50, 140
SsiI CCGC 5 cut(s) 62, 202, 257, 349, 898
SspMI CTAG 4 cut(s) 87, 165, 464, 590
SstI GAGCTC 1 cut(s) 14
StuI AGGCCT 2 cut(s) 50, 140
StyD4I CCNGG 2 cut(s) 76, 449
TaaI ACNGT 5 cut(s) 407, 496, 722, 950, 1291
TaiI ACGT 2 cut(s) 28, 216
TaqI TCGA 7 cut(s) 14, 45, 68, 688, 1156, 1275, 1337
TaqII GACCGA 2 cut(s) 377, 680
TatI WGTACW 1 cut(s) 996
TauI GCSGC 2 cut(s) 64, 259
TfiI GAWTC 4 cut(s) 283, 312, 668, 745
Tru1I TTAA 2 cut(s) 990, 1134
Tru9I TTAA 2 cut(s) 990, 1134
TscAI CASTG 2 cut(s) 517, 953
TseI GCWGC 5 cut(s) 559, 700, 703, 859, 1249
TspDTI ATGAA 4 cut(s) 102, 316, 715, 1320
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 2 cut(s) 517, 953
VpaK11BI GGWCC 3 cut(s) 360, 447, 663
XapI RAATTY 5 cut(s) 609, 940, 1042, 1118, 1258
XceI RCATGY 2 cut(s) 530, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XhoI CTCGAG 2 cut(s) 13, 1274
XmnI GAANNNNTTC 1 cut(s) 1207
XspI CTAG 4 cut(s) 87, 165, 464, 590
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.