AT2G26680

Methyltransferase FkbM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014250
Physical Location & Seq
Reverse (-)
11343766 .. 11345540
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26680.1

Sequence Viewer

Length: 960 bp
ATGGCGAGCGCCTGGAAAAAAGACAAGAACCAAAAACTTTTATCACCAAAGACACTAATCTCACTTCTTGTCCTTTCCATTATCTTCCTCTCTTCTCTCTTCTTCTTCTTCTCTAACTCCTCTCTCCAATACTCCAATCCAAATCTCTCCATCAATTCCCCATACCCTATCCCTCCTTTTGATTGCTTCAAATGTCCACAATCAAAACCCATAATCGCAAACGTCGTCGAAAATCTCAAGTACCCTTTTGTTTACTCTCTCGCTGATCTCGGTAATCTCCCGGAGAAACCACATAAGAACATTGTTAGGCTACTTAAAGGTAAGCCCTTTAGGAAACCAGATATCTCCGCAACGATTCAGGAGGTATTGGATAGTATGAGAGCTAGTGGTAAAAATGGGATTGTTGTTGATGTTGGAGCTAATGTTGGTATGGCTAGCTTTGCTGCTGCGGTTATGGGGTTTAAAGTTCTTGCCTTTGAGCCTGTTTTTGAGAATTTACAGAGGATTTGTGATGGGATTTGGTTTAATAGAGTTGCTTCTTTGGTTACTGTGTTTGAAGCTGCTGCTTCTGACAGAACAGGGGATATTACCTTCCATAAGTTGGTAGGACGGCTTGACAATAGCGCGGTTTCGGAGGTGGGAGCAAGGCTTGCATTCAAGTCCAACAAAGAGATAGCAGTGCAAGTCAAATCCATACCTCTTGATAAACTAATTCCACCTTCTCAACCTGTTCTTCTTATCAAGATCGACGTTCAAGGTTGGGAATACCACGTTTTAAAGGGTGCGAAGAAGTTGCTTTCAGGGAAACCAGCAGAAGCTCCTTATCTAATCTATGAGGAAGATGAGAGATTGCTCACGGCAAGCAATAGTAGCTCGAAAGAGATACGTGATTTTCTTAAAAGCGTTGGATATAGTAAGTGTAGCCAGCATGGGACAGATGCACATTGCACCAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_21

Protein Analysis

319

Amino Acids

35.19

Weight (kDa)

9.19

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_21 PF05050 137 - 305 4.9e-16 Methyltransferase FkbM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014250)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26680
fragaria_vesca FvH4_1g03280 FvH4_1g03280
malus_domestica MD02G1032800.v1.1
prunus_persica Prupe.7G242700_v2.0.a1
pyrus_communis pycom15g15480
rosa_chinensis RchiOBHm_Chr2g0088431
rosa_laevigata RLG00000015954 RLG00000015958
rosa_multiflora Rmu_sc0004733.1_g000021
rosa_roxburghii Rroxscaffold_2G00152670
rosa_rugosa Rorug01G0484000 Rorug01G0484100
rosa_samantha Rh2BG038000 Rh2CG039100 Rh2DG038700
rosa_wichuraiana Rw2G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 601
AccII CGCG 1 cut(s) 626
AciI CCGC 3 cut(s) 348, 449, 626
AcsI RAATTY 1 cut(s) 493
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 601
AgsI TTSAA 4 cut(s) 190, 557, 658, 755
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 6 cut(s) 383, 419, 438, 560, 818, 873
AluI AGCT 6 cut(s) 383, 419, 438, 560, 818, 873
ApeKI GCWGC 4 cut(s) 443, 446, 560, 563
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 2 cut(s) 11, 626
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 434
BbvI GCAGC 4 cut(s) 430, 433, 547, 550
BccI CCATC 2 cut(s) 158, 506
BceAI ACGGC 2 cut(s) 626, 873
BcgI CGANNNNNNTGC 2 cut(s) 775, 809
BciT130I CCWGG 1 cut(s) 13
BcnI CCSGG 1 cut(s) 281
BfaI CTAG 2 cut(s) 384, 435
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 4 cut(s) 444, 447, 561, 564
BlsI GCNGC 4 cut(s) 445, 448, 562, 565
Bme1390I CCNGG 2 cut(s) 13, 281
BmrFI CCNGG 2 cut(s) 13, 281
BmsI GCATC 1 cut(s) 928
BmtI GCTAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 887
BsaJI CCNNGG 1 cut(s) 951
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 601
Bse3DI GCAATG 1 cut(s) 943
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 951
BseLI CCNNNNNNNGG 1 cut(s) 601
BseMI GCAATG 1 cut(s) 943
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 4 cut(s) 430, 433, 547, 550
Bsh1236I CGCG 1 cut(s) 626
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 946
BslI CCNNNNNNNGG 1 cut(s) 601
BsmFI GGGAC 1 cut(s) 946
BsmI GAATGC 1 cut(s) 653
Bsp143I GATC 2 cut(s) 265, 744
BspACI CCGC 3 cut(s) 348, 449, 626
BspFNI CGCG 1 cut(s) 626
BspOI GCTAGC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 943
BssECI CCNNGG 1 cut(s) 951
BssMI GATC 2 cut(s) 265, 744
BssT1I CCWWGG 1 cut(s) 951
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 2 cut(s) 97, 104
BstAPI GCANNNNNTGC 1 cut(s) 650
BstBAI YACGTR 1 cut(s) 887
BstC8I GCNNGC 5 cut(s) 7, 436, 651, 862, 926
BstFNI CGCG 1 cut(s) 626
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 626
BstKTI GATC 2 cut(s) 268, 747
BstMBI GATC 2 cut(s) 265, 744
BstMWI GCNNNNNNNGC 3 cut(s) 440, 650, 870
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 11, 279
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 4 cut(s) 430, 433, 547, 550
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 5 cut(s) 7, 436, 651, 862, 926
CfoI GCGC 2 cut(s) 11, 626
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 929
CviQI GTAC 1 cut(s) 241
DpnI GATC 2 cut(s) 267, 746
DpnII GATC 2 cut(s) 265, 744
DraI TTTAAA 2 cut(s) 463, 777
Eam1104I CTCTTC 2 cut(s) 97, 104
EarI CTCTTC 2 cut(s) 97, 104
Eco130I CCWWGG 1 cut(s) 951
Eco32I GATATC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 951
FaeI CATG 1 cut(s) 932
FaqI GGGAC 1 cut(s) 946
FatI CATG 1 cut(s) 928
Fnu4HI GCNGC 4 cut(s) 444, 447, 561, 564
Fsp4HI GCNGC 4 cut(s) 444, 447, 561, 564
FspBI CTAG 2 cut(s) 384, 435
GlaI GCGC 2 cut(s) 10, 625
GluI GCNGC 4 cut(s) 444, 447, 561, 564
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 1 cut(s) 281
HhaI GCGC 2 cut(s) 11, 626
Hin1II CATG 1 cut(s) 932
Hin6I GCGC 2 cut(s) 9, 624
HinP1I GCGC 2 cut(s) 9, 624
HinfI GANTC 1 cut(s) 355
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 197, 253
Hpy188I TCNGA 2 cut(s) 571, 634
Hpy188III TCNNGA 3 cut(s) 359, 701, 742
Hpy8I GTNNAC 2 cut(s) 197, 253
Hpy99I CGWCG 3 cut(s) 227, 230, 752
HpyAV CCTTC 2 cut(s) 601, 729
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 4 cut(s) 222, 750, 771, 886
HpyCH4V TGCA 4 cut(s) 653, 682, 941, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 650, 870
HpySE526I ACGT 4 cut(s) 222, 750, 771, 886
Hsp92II CATG 1 cut(s) 932
HspAI GCGC 2 cut(s) 9, 624
Kzo9I GATC 2 cut(s) 265, 744
LmnI GCTCC 3 cut(s) 416, 641, 823
Lsp1109I GCAGC 4 cut(s) 430, 433, 547, 550
LweI GCATC 1 cut(s) 928
MaeI CTAG 2 cut(s) 384, 435
MaeII ACGT 4 cut(s) 222, 750, 771, 886
MaeIII GTNAC 1 cut(s) 544
MalI GATC 2 cut(s) 267, 746
MboI GATC 2 cut(s) 265, 744
MboII GAAGA 9 cut(s) 76, 84, 91, 94, 97, 100, 725, 799, 851
MluCI AATT 3 cut(s) 154, 493, 711
MmeI TCCRAC 3 cut(s) 394, 687, 886
MnlI CCTC 8 cut(s) 98, 130, 183, 355, 495, 628, 708, 829
MseI TTAA 5 cut(s) 315, 462, 525, 776, 897
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 13, 281
Mva1269I GAATGC 1 cut(s) 653
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 3 cut(s) 440, 650, 870
NciI CCSGG 1 cut(s) 281
NdeII GATC 2 cut(s) 265, 744
NheI GCTAGC 1 cut(s) 434
NlaIII CATG 1 cut(s) 932
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 653
PfeI GAWTC 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 601
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 4 cut(s) 445, 448, 562, 565
Ppu21I YACGTR 1 cut(s) 887
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 5 cut(s) 315, 462, 525, 776, 897
SatI GCNGC 4 cut(s) 444, 447, 561, 564
Sau3AI GATC 2 cut(s) 265, 744
ScrFI CCNGG 2 cut(s) 13, 281
SfaNI GCATC 1 cut(s) 928
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 154, 493, 711
SsiI CCGC 3 cut(s) 348, 449, 626
SspMI CTAG 2 cut(s) 384, 435
StyD4I CCNGG 2 cut(s) 11, 279
StyI CCWWGG 1 cut(s) 951
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 4 cut(s) 225, 753, 774, 889
TaqI TCGA 3 cut(s) 228, 747, 875
TasI AATT 3 cut(s) 154, 493, 711
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 5 cut(s) 315, 462, 525, 776, 897
Tru9I TTAA 5 cut(s) 315, 462, 525, 776, 897
TscAI CASTG 1 cut(s) 684
TseI GCWGC 4 cut(s) 443, 446, 560, 563
TspRI CASTG 1 cut(s) 684
Van91I CCANNNNNTGG 1 cut(s) 601
XapI RAATTY 1 cut(s) 493
XspI CTAG 2 cut(s) 384, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.