FvH4_1g03280

Methyltransferase FkbM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014250
Physical Location & Seq
Reverse (-)
1812915 .. 1815174
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03280.t2

Sequence Viewer

Length: 963 bp
ATGGCCAATGCTTGGAAACGAGAGAAACCCATCAGACCCATCTTCCTTCTCTGCTCCGCCGCTCTCTTCCTCCTCTTCTTCTTCTTCATCTTCCTCACCCTCCAAAACCCTAGCTCCTCCCTAAACCCTAACCCCATTGTTCTGAGCTCATTCCGCGGCCCAATCCAGCCCTTCAATTGCGATCTATGCCCCCAATCCCACCCGGTCATTGCCAACGTCGTCGAGGGCCTCAAGTACCCATTCCTATACTCCCTCGCCGATTTGGGGAACTTGCCGGAAAAGCCCCACAAGAACATCGTGAGAATGCTGAAGGGGAAGCCTTTCCGGCGACCCGATATCTCGGAGACGATTCAGGAGGTTTTGGGGAGGTTGAGGAGTGAAGGGAATAAGGGGAATGGGGTTGTGGTGGACGTTGGGGGCAATGTGGGCATTGCCAGCTTTGCTGCTGCGGTGATGGGTTTTCGGGTTTATGCTTTCGAGCCGGTTTTGGAGAATCTGCAGAGGATTTGTGATGGGATTTACTTGAATCGTGTTAGGGATATGGTCACTGTGTTTGAGGCTGCTGCGTCGGACCGCCTTGGGAACATTACCTTCCATAAGTTGGTTGGTCGTCTGGATAACAGTGCTGTTTCAGCCACTGGTGCAAAGTTGGCTTTTAAGTCTAATGAGGAGATAGCAGTTCAAGTAAGGACCGTCCCTCTCGATGATGTAATTCCAGAATCTGAACCTGTTCTTCTGCTCAAAATTGATGTTCAAGGCTGGGAATATCATGTGCTGAAAGGAGCTAAGAAGTTACTTTCAAGAGCTGCAAGTGAAGCACCATATCTCATTTATGAGGAAGACGAGCGTTTGTTGGAAGCCAGTAATACCACTAAAGTAGAGATCCGAAAGTTCCTTTCTAGTGTGGGTTACCGTCACTGCACGCAGCATGGCACAGATGCACACTGCACCAAGGAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_21

Protein Analysis

321

Amino Acids

35.54

Weight (kDa)

8.46

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014250)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26680
fragaria_vesca FvH4_1g03280 FvH4_1g03280
malus_domestica MD02G1032800.v1.1
prunus_persica Prupe.7G242700_v2.0.a1
pyrus_communis pycom15g15480
rosa_chinensis RchiOBHm_Chr2g0088431
rosa_laevigata RLG00000015954 RLG00000015958
rosa_multiflora Rmu_sc0004733.1_g000021
rosa_roxburghii Rroxscaffold_2G00152670
rosa_rugosa Rorug01G0484000 Rorug01G0484100
rosa_samantha Rh2BG038000 Rh2CG039100 Rh2DG038700
rosa_wichuraiana Rw2G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 12, 601
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 156
AciI CCGC 6 cut(s) 57, 60, 154, 156, 449, 574
AclWI GGATC 1 cut(s) 877
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 12, 264, 601
AgsI TTSAA 5 cut(s) 175, 526, 683, 755, 801
AluBI AGCT 5 cut(s) 114, 147, 438, 785, 806
AluI AGCT 5 cut(s) 114, 147, 438, 785, 806
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 877
AlwNI CAGNNNCTG 2 cut(s) 638, 722
AoxI GGCC 3 cut(s) 3, 157, 226
ApeKI GCWGC 6 cut(s) 443, 446, 560, 563, 806, 925
Asp700I GAANNNNTTC 2 cut(s) 320, 729
AspS9I GGNCC 4 cut(s) 158, 226, 571, 690
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 88, 463
AvaII GGWCC 2 cut(s) 571, 690
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 6 cut(s) 430, 433, 547, 550, 793, 937
BccI CCATC 4 cut(s) 38, 47, 448, 506
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 2 cut(s) 111, 900
BfmI CTRYAG 1 cut(s) 497
BglI GCCNNNNNGGC 1 cut(s) 325
BisI GCNGC 8 cut(s) 60, 157, 444, 447, 561, 564, 807, 926
BlsI GCNGC 8 cut(s) 61, 158, 445, 448, 562, 565, 808, 927
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 571, 690
BmgT120I GGNCC 4 cut(s) 158, 226, 571, 690
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 928
BpiI GAAGAC 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 154, 577, 951
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 264, 601
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 643, 861
Bse3DI GCAATG 3 cut(s) 207, 427, 429
BseDI CCNNGG 3 cut(s) 154, 577, 951
BseLI CCNNNNNNNGG 3 cut(s) 12, 264, 601
BseMI GCAATG 3 cut(s) 207, 427, 429
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 643, 861
BseRI GAGGAG 4 cut(s) 62, 106, 388, 683
BseXI GCAGC 6 cut(s) 430, 433, 547, 550, 793, 937
BseYI CCCAGC 1 cut(s) 759
BsgI GTGCAG 2 cut(s) 904, 931
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 3 cut(s) 5, 159, 228
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 4 cut(s) 203, 275, 325, 482
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 3 cut(s) 12, 264, 601
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 3 cut(s) 5, 159, 228
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 181, 882
BspACI CCGC 6 cut(s) 57, 60, 154, 156, 449, 574
BspANI GGCC 3 cut(s) 5, 159, 228
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 501
BspPI GGATC 1 cut(s) 877
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 3 cut(s) 207, 427, 429
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 643, 861
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 3 cut(s) 154, 577, 951
BssMI GATC 2 cut(s) 181, 882
BssT1I CCWWGG 2 cut(s) 577, 951
Bst4CI ACNGT 4 cut(s) 550, 623, 694, 914
Bst6I CTCTTC 2 cut(s) 71, 80
BstC8I GCNNGC 2 cut(s) 436, 923
BstDEI CTNAG 2 cut(s) 143, 786
BstDSI CCRYGG 1 cut(s) 154
BstEII GGTNACC 1 cut(s) 908
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 2 cut(s) 184, 885
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 2 cut(s) 181, 882
BstPI GGTNACC 1 cut(s) 908
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 497
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 6 cut(s) 430, 433, 547, 550, 793, 937
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 882
BstYI RGATCY 1 cut(s) 882
BsuRI GGCC 3 cut(s) 5, 159, 228
BtgI CCRYGG 1 cut(s) 154
BtsI GCAGTG 2 cut(s) 916, 943
BtsIMutI CAGTG 5 cut(s) 546, 628, 636, 916, 943
Cac8I GCNNGC 2 cut(s) 436, 923
CaiI CAGNNNCTG 2 cut(s) 638, 722
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 4 cut(s) 158, 226, 571, 690
Cfr42I CCGCGG 1 cut(s) 157
CpoI CGGWCCG 1 cut(s) 571
CseI GACGC 1 cut(s) 555
Csp6I GTAC 1 cut(s) 235
CspI CGGWCCG 1 cut(s) 571
CviAII CATG 2 cut(s) 770, 929
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 2 cut(s) 143, 786
DpnI GATC 2 cut(s) 183, 884
DpnII GATC 2 cut(s) 181, 882
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 71, 80
EarI CTCTTC 2 cut(s) 71, 80
EciI GGCGGA 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 577, 951
Eco24I GRGCYC 1 cut(s) 149
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 2 cut(s) 571, 690
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 908
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 577, 951
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 577, 951
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 773, 932
FaiI YATR 9 cut(s) 187, 247, 471, 542, 597, 771, 823, 834, 930
FaqI GGGAC 1 cut(s) 680
FatI CATG 2 cut(s) 769, 928
Fnu4HI GCNGC 8 cut(s) 60, 157, 444, 447, 561, 564, 807, 926
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 8 cut(s) 60, 157, 444, 447, 561, 564, 807, 926
FspBI CTAG 2 cut(s) 111, 900
GluI GCNGC 8 cut(s) 60, 157, 444, 447, 561, 564, 807, 926
GsaI CCCAGC 1 cut(s) 763
HaeIII GGCC 3 cut(s) 5, 159, 228
HapII CCGG 4 cut(s) 203, 275, 325, 482
HgaI GACGC 1 cut(s) 555
Hin1II CATG 2 cut(s) 773, 932
HinfI GANTC 4 cut(s) 349, 493, 526, 719
HpaII CCGG 4 cut(s) 203, 275, 325, 482
HphI GGTGA 2 cut(s) 88, 463
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 6 cut(s) 35, 144, 343, 571, 724, 887
Hpy188III TCNNGA 6 cut(s) 298, 353, 614, 701, 716, 801
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 3 cut(s) 221, 224, 571
HpyAV CCTTC 5 cut(s) 56, 181, 304, 374, 601
HpyCH4III ACNGT 4 cut(s) 550, 623, 694, 914
HpyCH4IV ACGT 2 cut(s) 216, 411
HpyCH4V TGCA 6 cut(s) 499, 644, 809, 921, 941, 948
HpyF3I CTNAG 2 cut(s) 143, 786
HpySE526I ACGT 2 cut(s) 216, 411
Hsp92II CATG 2 cut(s) 773, 932
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 181, 882
LmnI GCTCC 3 cut(s) 59, 119, 782
Lsp1109I GCAGC 6 cut(s) 430, 433, 547, 550, 793, 937
LweI GCATC 1 cut(s) 928
MaeI CTAG 2 cut(s) 111, 900
MaeII ACGT 2 cut(s) 216, 411
MaeIII GTNAC 4 cut(s) 544, 792, 908, 914
MalI GATC 2 cut(s) 183, 884
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 181, 882
MboII GAAGA 9 cut(s) 34, 58, 67, 70, 73, 76, 82, 725, 851
MfeI CAATTG 1 cut(s) 175
MflI RGATCY 1 cut(s) 882
MhlI GDGCHC 1 cut(s) 149
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 175, 711, 744
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 549, 834
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 320, 729
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 657, 961
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 4 cut(s) 203, 275, 325, 482
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 309
MvnI CGCG 1 cut(s) 156
NciI CCSGG 1 cut(s) 203
NdeII GATC 2 cut(s) 181, 882
NlaIII CATG 2 cut(s) 773, 932
NmuCI GTSAC 2 cut(s) 544, 914
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 2 cut(s) 320, 729
PfeI GAWTC 4 cut(s) 349, 493, 526, 719
PflMI CCANNNNNTGG 2 cut(s) 12, 601
PkrI GCNGC 8 cut(s) 61, 158, 445, 448, 562, 565, 808, 927
Psp124BI GAGCTC 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 908
PspFI CCCAGC 1 cut(s) 759
PspPI GGNCC 4 cut(s) 158, 226, 571, 690
PstI CTGCAG 1 cut(s) 501
PstNI CAGNNNCTG 2 cut(s) 638, 722
PsuI RGATCY 1 cut(s) 882
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
Rsr2I CGGWCCG 1 cut(s) 571
RsrII CGGWCCG 1 cut(s) 571
SacI GAGCTC 1 cut(s) 149
SacII CCGCGG 1 cut(s) 157
SaqAI TTAA 2 cut(s) 657, 961
SatI GCNGC 8 cut(s) 60, 157, 444, 447, 561, 564, 807, 926
Sau3AI GATC 2 cut(s) 181, 882
Sau96I GGNCC 4 cut(s) 158, 226, 571, 690
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 1 cut(s) 928
SfcI CTRYAG 1 cut(s) 497
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 2 cut(s) 571, 690
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 3 cut(s) 175, 711, 744
SsiI CCGC 6 cut(s) 57, 60, 154, 156, 449, 574
SspMI CTAG 2 cut(s) 111, 900
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 2 cut(s) 577, 951
TaaI ACNGT 4 cut(s) 550, 623, 694, 914
TaiI ACGT 2 cut(s) 219, 414
TaqI TCGA 3 cut(s) 222, 477, 702
TasI AATT 3 cut(s) 175, 711, 744
TauI GCSGC 2 cut(s) 62, 159
TfiI GAWTC 4 cut(s) 349, 493, 526, 719
Tru1I TTAA 2 cut(s) 657, 961
Tru9I TTAA 2 cut(s) 657, 961
TscAI CASTG 5 cut(s) 553, 628, 643, 923, 950
TseFI GTSAC 2 cut(s) 544, 914
TseI GCWGC 6 cut(s) 443, 446, 560, 563, 806, 925
Tsp45I GTSAC 2 cut(s) 544, 914
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 5 cut(s) 553, 628, 643, 923, 950
Van91I CCANNNNNTGG 2 cut(s) 12, 601
VpaK11BI GGWCC 2 cut(s) 571, 690
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmnI GAANNNNTTC 2 cut(s) 320, 729
XspI CTAG 2 cut(s) 111, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.