Prupe.7G242700_v2.0.a1

Methyltransferase FkbM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014250
Physical Location & Seq
Forward (+)
20815686 .. 20818983
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G242700.1

Sequence Viewer

Length: 966 bp
ATGGCTAATGCCTGGAAGAAAGAGAAACCCATGAGACCCCTATTGCTTCTCTTCTCTGCCACTCTCGTCCTCGTCTTCATCTTCTTCTTCCTCGCCTCTCGCCCTTCCTCAAACCCCTCCCCTCCAGGCCTTAACCCCACCATCAGAACCGATCTCCCGATTTACCCACTCCCACCTTTCAATTGCGAAGAGTGCCGGCAGTCCCACCCTGTAATCGCTAACGTTGTCGAAGGCCTTAGCTACCCTTTCATCTACTCGCTCGCCGATTTGGGTAGGTTGCCCGAGAAGCCGCACAAGGACATCGTCAGATTTCTCAAGGGCAAGCCTTTTCGGAGACCCGATATATCGGCGACGATTCAGGGGCTTTTGGAGAAATTCAAAGGTGAAGGGAGGGACAATGGGCTTGTGGTGGACGTGGGTGCCAATGTGGGCATGGCCAGCTTCGCCGCCGCGGTTATGGGCTTTCAGGTGCTAGCTTTCGAGCCCGTTTTCGAAAATTTGCAGAGGATTTGTGATGGCATTTACTTGAATCGTGTTGGAGATTTGGTCACTGTGTTCGAGGCCGCAGCCTCCGATCGCCCTGGCAATATCACCTTCCACAAGTTGGTCAGTCGGATGGACAATAGTGCTATTTCGGCTGCTGGTGCAAAGTTGGCCTTCAAGAATAAGGAAGAGGTGGCAGTTCAAGTAAGAACCATCCCGCTTGATGATGTAATCCCAGATTCAGAGCCTGTTCTTCTGCTCAAGATTGATGTTCAAGGCTGGGAATATCATGTGCTGAAAGGAGCGTCCAGGTTACTATCAAGGAAGGCAAGCAAAGCACCCTATATCATTTATGAGGAAGATGAACGGCTCTTGCAAGCCAGTAATAGCAGCGCAAAAGAGATACGAAAGTTCCTACGTGGTGTGGGTTACAATCATTGCACGCAGCTTGGTACAGACGCACACTGCACCAAATTGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_21

Protein Analysis

322

Amino Acids

35.51

Weight (kDa)

8.86

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014250)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26680
fragaria_vesca FvH4_1g03280 FvH4_1g03280
malus_domestica MD02G1032800.v1.1
prunus_persica Prupe.7G242700_v2.0.a1
pyrus_communis pycom15g15480
rosa_chinensis RchiOBHm_Chr2g0088431
rosa_laevigata RLG00000015954 RLG00000015958
rosa_multiflora Rmu_sc0004733.1_g000021
rosa_roxburghii Rroxscaffold_2G00152670
rosa_rugosa Rorug01G0484000 Rorug01G0484100
rosa_samantha Rh2BG038000 Rh2CG039100 Rh2DG038700
rosa_wichuraiana Rw2G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 604
AccII CGCG 1 cut(s) 452
AciI CCGC 6 cut(s) 290, 447, 450, 452, 564, 701
AclI AACGTT 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 2 cut(s) 374, 496
AfaI GTAC 1 cut(s) 937
AfiI CCNNNNNNNGG 1 cut(s) 604
AgsI TTSAA 6 cut(s) 181, 379, 529, 661, 686, 758
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 4 cut(s) 11, 124, 580, 791
AluBI AGCT 4 cut(s) 240, 441, 476, 931
AluI AGCT 4 cut(s) 240, 441, 476, 931
Alw26I GTCTC 2 cut(s) 28, 328
AlwNI CAGNNNCTG 1 cut(s) 731
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 5 cut(s) 127, 232, 435, 561, 654
ApeKI GCWGC 4 cut(s) 566, 638, 873, 928
ApoI RAATTY 2 cut(s) 374, 496
AspLEI GCGC 1 cut(s) 878
AsuHPI GGTGA 2 cut(s) 395, 583
AsuII TTCGAA 1 cut(s) 492
AsuNHI GCTAGC 1 cut(s) 472
AvaI CYCGRG 1 cut(s) 281
BaeI ACNNNNGTAYC 2 cut(s) 878, 911
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 4 cut(s) 578, 625, 885, 940
BccI CCATC 4 cut(s) 149, 509, 610, 704
BceAI ACGGC 1 cut(s) 866
BciT130I CCWGG 4 cut(s) 13, 126, 582, 793
BcoDI GTCTC 2 cut(s) 28, 328
BfaI CTAG 1 cut(s) 473
BisI GCNGC 8 cut(s) 290, 447, 450, 564, 567, 639, 874, 929
BlsI GCNGC 8 cut(s) 291, 448, 451, 565, 568, 640, 875, 930
Bme1390I CCNGG 4 cut(s) 13, 126, 582, 793
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 4 cut(s) 13, 126, 582, 793
BmtI GCTAGC 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 299, 728
BsaAI YACGTR 1 cut(s) 902
BsaI GGTCTC 2 cut(s) 28, 328
BsaJI CCNNGG 2 cut(s) 450, 580
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 864
Bse3DI GCAATG 1 cut(s) 919
BseBI CCWGG 4 cut(s) 13, 126, 582, 793
BseDI CCNNGG 2 cut(s) 450, 580
BseGI GGATG 2 cut(s) 621, 696
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMI GCAATG 1 cut(s) 919
BseNI ACTGG 1 cut(s) 864
BseXI GCAGC 4 cut(s) 578, 625, 885, 940
BseYI CCCAGC 1 cut(s) 762
BsgI GTGCAG 1 cut(s) 934
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 5 cut(s) 129, 234, 437, 563, 656
BshNI GGYRCC 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 2 cut(s) 187, 407
BslI CCNNNNNNNGG 1 cut(s) 604
BsmAI GTCTC 2 cut(s) 28, 328
BsmFI GGGAC 2 cut(s) 187, 407
BsnI GGCC 5 cut(s) 129, 234, 437, 563, 656
Bso31I GGTCTC 2 cut(s) 28, 328
BsoBI CYCGRG 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 2 cut(s) 151, 574
BspACI CCGC 6 cut(s) 290, 447, 450, 452, 564, 701
BspANI GGCC 5 cut(s) 129, 234, 437, 563, 656
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 476
BspT104I TTCGAA 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 419
BspTNI GGTCTC 2 cut(s) 28, 328
BsrDI GCAATG 1 cut(s) 919
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 864
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 450, 580
BssMI GATC 2 cut(s) 151, 574
Bst2UI CCWGG 4 cut(s) 13, 126, 582, 793
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 3 cut(s) 56, 183, 666
BstBAI YACGTR 1 cut(s) 902
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 8 cut(s) 197, 261, 323, 439, 474, 814, 861, 926
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 621, 696
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 2 cut(s) 154, 577
BstMAI GTCTC 2 cut(s) 28, 328
BstMBI GATC 2 cut(s) 151, 574
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 8 cut(s) 192, 286, 438, 443, 635, 644, 653, 818
BstNI CCWGG 4 cut(s) 13, 126, 582, 793
BstSCI CCNGG 4 cut(s) 11, 124, 580, 791
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 4 cut(s) 578, 625, 885, 940
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 5 cut(s) 129, 234, 437, 563, 656
BtgI CCRYGG 1 cut(s) 450
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 2 cut(s) 621, 696
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 2 cut(s) 549, 946
Cac8I GCNNGC 8 cut(s) 197, 261, 323, 439, 474, 814, 861, 926
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 1 cut(s) 878
Cfr10I RCCGGY 1 cut(s) 195
Cfr42I CCGCGG 1 cut(s) 453
CseI GACGC 2 cut(s) 777, 950
Csp6I GTAC 1 cut(s) 936
CviAII CATG 3 cut(s) 31, 433, 773
CviQI GTAC 1 cut(s) 936
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 153, 576
DpnII GATC 2 cut(s) 151, 574
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 56, 183, 666
EarI CTCTTC 3 cut(s) 56, 183, 666
Eco147I AGGCCT 2 cut(s) 129, 234
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 2 cut(s) 28, 328
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 4 cut(s) 11, 124, 580, 791
EcoT38I GRGCYC 1 cut(s) 486
FaeI CATG 3 cut(s) 34, 436, 776
FaiI YATR 7 cut(s) 32, 344, 434, 458, 774, 828, 837
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 2 cut(s) 187, 407
FatI CATG 3 cut(s) 30, 432, 772
FauI CCCGC 1 cut(s) 708
Fnu4HI GCNGC 8 cut(s) 290, 447, 450, 564, 567, 639, 874, 929
FokI GGATG 2 cut(s) 628, 683
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 8 cut(s) 290, 447, 450, 564, 567, 639, 874, 929
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 877
GluI GCNGC 8 cut(s) 290, 447, 450, 564, 567, 639, 874, 929
GsaI CCCAGC 1 cut(s) 766
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 5 cut(s) 129, 234, 437, 563, 656
HapII CCGG 1 cut(s) 196
HgaI GACGC 2 cut(s) 777, 950
HhaI GCGC 1 cut(s) 878
Hin1II CATG 3 cut(s) 34, 436, 776
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HinfI GANTC 3 cut(s) 355, 529, 722
HpaII CCGG 1 cut(s) 196
HphI GGTGA 2 cut(s) 395, 583
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 6 cut(s) 146, 308, 333, 574, 615, 727
Hpy188III TCNNGA 3 cut(s) 157, 661, 745
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 6 cut(s) 114, 224, 380, 604, 667, 802
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 3 cut(s) 222, 414, 901
HpyCH4V TGCA 5 cut(s) 502, 647, 859, 924, 951
HpyF10VI GCNNNNNNNGC 8 cut(s) 192, 286, 438, 443, 635, 644, 653, 818
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 3 cut(s) 222, 414, 901
Hsp92II CATG 3 cut(s) 34, 436, 776
HspAI GCGC 1 cut(s) 876
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
KspI CCGCGG 1 cut(s) 453
Kzo9I GATC 2 cut(s) 151, 574
LmnI GCTCC 1 cut(s) 785
Lsp1109I GCAGC 4 cut(s) 578, 625, 885, 940
MaeI CTAG 1 cut(s) 473
MaeII ACGT 3 cut(s) 222, 414, 901
MaeIII GTNAC 3 cut(s) 547, 795, 911
MalI GATC 2 cut(s) 153, 576
MboI GATC 2 cut(s) 151, 574
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 486
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 4 cut(s) 181, 374, 496, 956
MluNI TGGCCA 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 517, 593
Mox20I TGGCCA 1 cut(s) 437
MroNI GCCGGC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 437
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 4 cut(s) 13, 126, 582, 793
MunI CAATTG 1 cut(s) 181
MvaI CCWGG 4 cut(s) 13, 126, 582, 793
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 8 cut(s) 192, 286, 438, 443, 635, 644, 653, 818
NaeI GCCGGC 1 cut(s) 197
NdeII GATC 2 cut(s) 151, 574
NgoMIV GCCGGC 1 cut(s) 195
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 3 cut(s) 34, 436, 776
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 547
NspV TTCGAA 1 cut(s) 492
PceI AGGCCT 2 cut(s) 129, 234
PdiI GCCGGC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 355, 529, 722
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 8 cut(s) 291, 448, 451, 565, 568, 640, 875, 930
Ple19I CGATCG 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 902
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 4 cut(s) 11, 124, 580, 791
PspFI CCCAGC 1 cut(s) 762
PspGI CCWGG 4 cut(s) 11, 124, 580, 791
PspN4I GGNNCC 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 731
PsyI GACNNNGTC 1 cut(s) 302
PvuI CGATCG 1 cut(s) 577
RsaI GTAC 1 cut(s) 937
RsaNI GTAC 1 cut(s) 936
SacII CCGCGG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 8 cut(s) 290, 447, 450, 564, 567, 639, 874, 929
Sau3AI GATC 2 cut(s) 151, 574
ScrFI CCNGG 4 cut(s) 13, 126, 582, 793
SduI GDGCHC 1 cut(s) 486
Sfr303I CCGCGG 1 cut(s) 453
SfuI TTCGAA 1 cut(s) 492
SgrBI CCGCGG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 314, 743
SmoI CTYRAG 2 cut(s) 314, 743
Sse9I AATT 4 cut(s) 181, 374, 496, 956
SseBI AGGCCT 2 cut(s) 129, 234
SsiI CCGC 6 cut(s) 290, 447, 450, 452, 564, 701
SspMI CTAG 1 cut(s) 473
StuI AGGCCT 2 cut(s) 129, 234
StyD4I CCNGG 4 cut(s) 11, 124, 580, 791
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 3 cut(s) 225, 417, 904
TaqI TCGA 4 cut(s) 228, 480, 492, 558
TasI AATT 4 cut(s) 181, 374, 496, 956
TauI GCSGC 4 cut(s) 292, 449, 452, 566
TfiI GAWTC 3 cut(s) 355, 529, 722
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 556, 953
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 4 cut(s) 566, 638, 873, 928
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 3 cut(s) 67, 238, 861
TspRI CASTG 2 cut(s) 556, 953
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 604
XapI RAATTY 2 cut(s) 374, 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.