Rh2DG038700

Methyltransferase FkbM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014250
Physical Location & Seq
Reverse (-)
2688003 .. 2689357
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG038700.1

Sequence Viewer

Length: 657 bp
ATGCTGAAGGGGAAGCCTTTCCGGCGACCCGACATTTCGGAGACCATTCAGGAGGTCTTGGGGAGGTTCAGGAGTGCAGGGAAGGACAATGGGCTTGTAGTCGACGTCGGCGGCAATGTGGGCATTGCCAGCTTCGCCGCCGCAGTGATGGGCTTTCGGGTTTTTGCTTTCGAGCCGGTTTTGGAGAATCTGCAGAGGATTTGCGATGGGATTTACTTGAATCGTGTTAGGGATTTGGTCACTGTGTTTGAGGCCGCTGCGTCGGACCGCCTCGGCAATATTACCTTCCATAAGTTGGTTGGTCGTCTGGACAATAGTGCTGTTTCAGCCACTGGTGCAAAGTTGGCTTTTAAGTCTAATGAAGAGATAGCAGTTCAAGTAAGGACTATCCCTCTTGATGATGTAATTCCAGAATTTGAACCTGTTCTTGTGCTCAAGATTGATGTTCAAGGCTGGGAATATCATGTGCTGAAAGGAGCTAAGAAGTTACTATCAAGAGCTGCAAGTGAAGCACCATATCTCATTTATGAGGAAGACGAGCGTTTGTTGGAAGCCAGTAATAGCAGTAAAGTAGAGATCCGAAAGTTCCTCTCTAGTGTGGGTTACCGTCACTGCACGCAGCATGGCACAGATGCACACTGCACCAAGGAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_21

Protein Analysis

218

Amino Acids

24.05

Weight (kDa)

6.53

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_21 PF05050 35 - 203 2e-19 Methyltransferase FkbM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014250)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26680
fragaria_vesca FvH4_1g03280 FvH4_1g03280
malus_domestica MD02G1032800.v1.1
prunus_persica Prupe.7G242700_v2.0.a1
pyrus_communis pycom15g15480
rosa_chinensis RchiOBHm_Chr2g0088431
rosa_laevigata RLG00000015954 RLG00000015958
rosa_multiflora Rmu_sc0004733.1_g000021
rosa_roxburghii Rroxscaffold_2G00152670
rosa_rugosa Rorug01G0484000 Rorug01G0484100
rosa_samantha Rh2BG038000 Rh2CG039100 Rh2DG038700
rosa_wichuraiana Rw2G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 1 cut(s) 102
AciI CCGC 5 cut(s) 111, 138, 141, 255, 268
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 4 cut(s) 220, 377, 419, 449
AluBI AGCT 3 cut(s) 132, 479, 500
AluI AGCT 3 cut(s) 132, 479, 500
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 571
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 3 cut(s) 257, 500, 619
ApoI RAATTY 1 cut(s) 413
Asp700I GAANNNNTTC 2 cut(s) 17, 423
AspS9I GGNCC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 244, 487, 631
BccI CCATC 2 cut(s) 142, 200
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 191
BglI GCCNNNNNGGC 1 cut(s) 22
BisI GCNGC 7 cut(s) 112, 138, 141, 255, 258, 501, 620
BlsI GCNGC 7 cut(s) 113, 139, 142, 256, 259, 502, 621
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 271, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 337, 555
Bse3DI GCAATG 2 cut(s) 121, 123
BseDI CCNNGG 2 cut(s) 271, 645
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 2 cut(s) 121, 123
BseNI ACTGG 2 cut(s) 337, 555
BseXI GCAGC 3 cut(s) 244, 487, 631
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 3 cut(s) 96, 598, 625
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 2 cut(s) 22, 176
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 1 cut(s) 576
BspACI CCGC 5 cut(s) 111, 138, 141, 255, 268
BspANI GGCC 1 cut(s) 254
BspMAI CTGCAG 1 cut(s) 195
BspPI GGATC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 2 cut(s) 121, 123
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 2 cut(s) 337, 555
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 271, 645
BssMI GATC 1 cut(s) 576
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 645
Bst4CI ACNGT 2 cut(s) 244, 608
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 130, 617
BstDEI CTNAG 1 cut(s) 480
BstEII GGTNACC 1 cut(s) 602
BstKTI GATC 1 cut(s) 579
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 576
BstMWI GCNNNNNNNGC 8 cut(s) 22, 120, 129, 134, 326, 335, 344, 509
BstPI GGTNACC 1 cut(s) 602
BstSFI CTRYAG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 244, 487, 631
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
BsuRI GGCC 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 219
BtsI GCAGTG 3 cut(s) 150, 610, 637
BtsIMutI CAGTG 5 cut(s) 150, 240, 330, 610, 637
Cac8I GCNNGC 2 cut(s) 130, 617
CaiI CAGNNNCTG 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 265
CpoI CGGWCCG 1 cut(s) 265
CseI GACGC 1 cut(s) 249
CspI CGGWCCG 1 cut(s) 265
CviAII CATG 2 cut(s) 464, 623
DdeI CTNAG 1 cut(s) 480
DpnI GATC 1 cut(s) 578
DpnII GATC 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 26
Eco91I GGTNACC 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 602
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 2 cut(s) 467, 626
FaiI YATR 5 cut(s) 291, 465, 517, 528, 624
FatI CATG 2 cut(s) 463, 622
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 7 cut(s) 112, 138, 141, 255, 258, 501, 620
Fsp4HI GCNGC 7 cut(s) 112, 138, 141, 255, 258, 501, 620
FspBI CTAG 1 cut(s) 594
GluI GCNGC 7 cut(s) 112, 138, 141, 255, 258, 501, 620
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 1 cut(s) 254
HapII CCGG 2 cut(s) 22, 176
HgaI GACGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 467, 626
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 187, 220
HpaII CCGG 2 cut(s) 22, 176
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 40, 265, 581
Hpy188III TCNNGA 7 cut(s) 50, 70, 308, 395, 410, 436, 495
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 3 cut(s) 107, 110, 265
HpyAV CCTTC 2 cut(s) 76, 295
HpyCH4III ACNGT 2 cut(s) 244, 608
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 7 cut(s) 77, 193, 338, 503, 615, 635, 642
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 120, 129, 134, 326, 335, 344, 509
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 467, 626
Kzo9I GATC 1 cut(s) 576
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 3 cut(s) 244, 487, 631
LweI GCATC 1 cut(s) 622
MaeI CTAG 1 cut(s) 594
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 4 cut(s) 238, 486, 602, 608
MalI GATC 1 cut(s) 578
MboI GATC 1 cut(s) 576
MboII GAAGA 2 cut(s) 374, 545
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 2 cut(s) 405, 413
MmeI TCCRAC 2 cut(s) 243, 528
MnlI CCTC 9 cut(s) 46, 57, 189, 244, 281, 402, 523, 599, 643
MroXI GAANNNNTTC 2 cut(s) 17, 423
MseI TTAA 2 cut(s) 351, 655
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 22, 176
MwoI GCNNNNNNNGC 8 cut(s) 22, 120, 129, 134, 326, 335, 344, 509
NdeII GATC 1 cut(s) 576
NlaIII CATG 2 cut(s) 467, 626
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 2 cut(s) 238, 608
PdmI GAANNNNTTC 2 cut(s) 17, 423
PfeI GAWTC 2 cut(s) 187, 220
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 7 cut(s) 113, 139, 142, 256, 259, 502, 621
PspEI GGTNACC 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 576
Rsr2I CGGWCCG 1 cut(s) 265
RsrII CGGWCCG 1 cut(s) 265
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 351, 655
SatI GCNGC 7 cut(s) 112, 138, 141, 255, 258, 501, 620
Sau3AI GATC 1 cut(s) 576
Sau96I GGNCC 1 cut(s) 265
SduI GDGCHC 1 cut(s) 435
SetI ASST 8 cut(s) 57, 68, 108, 134, 287, 424, 481, 502
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 2 cut(s) 405, 413
SsiI CCGC 5 cut(s) 111, 138, 141, 255, 268
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 244, 608
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 102, 171
TasI AATT 2 cut(s) 405, 413
TauI GCSGC 4 cut(s) 114, 140, 143, 257
TfiI GAWTC 2 cut(s) 187, 220
Tru1I TTAA 2 cut(s) 351, 655
Tru9I TTAA 2 cut(s) 351, 655
TscAI CASTG 5 cut(s) 150, 247, 337, 617, 644
TseFI GTSAC 2 cut(s) 238, 608
TseI GCWGC 3 cut(s) 257, 500, 619
Tsp45I GTSAC 2 cut(s) 238, 608
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 5 cut(s) 150, 247, 337, 617, 644
Van91I CCANNNNNTGG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 2 cut(s) 17, 423
XspI CTAG 1 cut(s) 594
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.