AT2G26695

Zinc finger Ran-binding domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012950
Physical Location & Seq
Forward (+)
11364996 .. 11366030
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26695.1

Sequence Viewer

Length: 417 bp
ATGAGCTGGACCGGAGGAGATTGGCTATGTGGTGCGTGTCAGCACGCAAACTTCAAGAAAAGAGAATCATGTCAAAAATGCGGATACCCCAAATTTGGAGGGGTTGATGTGTCAACGTACTTGTACAACAGGACCGAAGTTATGGCTGGTGATTGGTATTGTGGTGCATTGAATTGTGGGAGCCACAATTACGCGAGCCGAACAAGTTGTTACCGATGTGGAATGATCAAAGTCGAGTATACGGAACAGTACTATGGAGCTCAAATGGTTGCTTACGGGAATGATGGCGCAGCTTGTCCTCCCGGATGGAAAACTGGCGATTGGGTTTGTCCTAGGGTGGGATGTGGGGTTCATAACTACGCAAGCAGGGCAGAATGCTTCAAATGCAAGACAACAAGAGATTATGGTGGCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

138

Amino Acids

15.3

Weight (kDa)

8.39

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 104 - 133 5.8e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 3 cut(s) 119, 125, 251
AfiI CCNNNNNNNGG 2 cut(s) 95, 338
AgsI TTSAA 3 cut(s) 55, 172, 382
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 6, 260, 293
AluI AGCT 3 cut(s) 6, 260, 293
Alw21I GWGCWC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 92
AspA2I CCTAGG 1 cut(s) 332
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 9, 132
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 2 cut(s) 9, 132
AvrII CCTAGG 1 cut(s) 332
BanII GRGCYC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 302
BccI CCATC 2 cut(s) 278, 300
BciVI GTATCC 1 cut(s) 77
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 1 cut(s) 291
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 1 cut(s) 292
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 2 cut(s) 9, 132
BmgT120I GGNCC 2 cut(s) 9, 132
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 338
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 2 cut(s) 311, 347
BseLI CCNNNNNNNGG 2 cut(s) 95, 338
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 2 cut(s) 12, 303
BslI CCNNNNNNNGG 2 cut(s) 95, 338
BsmI GAATGC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 81
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 1 cut(s) 225
BssNAI GTATAC 1 cut(s) 240
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 1 cut(s) 332
Bst1107I GTATAC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 45, 196, 364
BstF5I GGATG 2 cut(s) 311, 347
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 368, 384
BstSCI CCNGG 1 cut(s) 301
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 302
BstZ17I GTATAC 1 cut(s) 240
BsuI GTATCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 311, 347
Cac8I GCNNGC 3 cut(s) 45, 196, 364
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 9, 132
CseI GACGC 1 cut(s) 400
Csp6I GTAC 3 cut(s) 118, 124, 250
CviAII CATG 1 cut(s) 69
CviJI RGCY 7 cut(s) 6, 25, 146, 183, 198, 260, 293
CviKI_1 RGCY 7 cut(s) 6, 25, 146, 183, 198, 260, 293
CviQI GTAC 3 cut(s) 118, 124, 250
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 9, 132
Eco53kI GAGCTC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 72
FaiI YATR 7 cut(s) 28, 70, 143, 240, 255, 354, 405
FatI CATG 1 cut(s) 68
FbaI TGATCA 1 cut(s) 225
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 2 cut(s) 318, 354
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 291
HapII CCGG 2 cut(s) 12, 303
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 12, 303
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 114, 240
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 114, 240
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 167, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 384
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 180, 257
LpnPI CCDG 6 cut(s) 25, 115, 132, 300, 316, 352
Lsp1109I GCAGC 1 cut(s) 302
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 3 cut(s) 92, 172, 187
MnlI CCTC 3 cut(s) 8, 92, 309
MspI CCGG 2 cut(s) 12, 303
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 380
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 368, 384
NciI CCSGG 1 cut(s) 303
NdeII GATC 1 cut(s) 225
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 182
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 2 cut(s) 9, 132
RsaI GTAC 3 cut(s) 119, 125, 251
RsaNI GTAC 3 cut(s) 118, 124, 250
SacI GAGCTC 1 cut(s) 262
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 2 cut(s) 9, 132
ScaI AGTACT 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 262
SetI ASST 4 cut(s) 8, 119, 262, 295
SinI GGWCC 2 cut(s) 9, 132
Sse9I AATT 3 cut(s) 92, 172, 187
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 234
TaqII GACCGA 1 cut(s) 149
TasI AATT 3 cut(s) 92, 172, 187
TatI WGTACW 2 cut(s) 123, 249
TfiI GAWTC 1 cut(s) 65
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 9, 132
XapI RAATTY 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 239
XspI CTAG 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.