Rmu_sc0016750.1_g000002

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016750.1
OG0012950
Physical Location & Seq
Forward (+)
4553 .. 8313
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016750.1_g000002.1.cds

Sequence Viewer

Length: 849 bp
atgttgattgcatacacaggaagaatgagctgggcaggaggagactggatgtgtggcgcatgccagcacttgaattttaaaaagcgggaagcatgccaacgatgtgggtaccccaagtatggtggccctgatccctcgacatatggaagcaacagaacagaagtcttggcgggggactggttttgcaactgcggagctcacaattatgcacagagaccaaattgcttcagatgcactgcattgaaaaatgactacagtggtgggtataacatgatggcttctggaggctatggatctgatggcagtgcaccaccaggatggaaagctggtgactggatttgcaatagccccaaagagaagaggcccaatcaatggcctagcaccagaccaccctttcgccacgcttgcagtagactatgcagcgccgccctcgagccccacccactccacgagccagcctcgcctcgagccgcgccctcaagctccgctacaagccagcaccacctcgagcccctagcccctccagccgcaccgtcgctagacgcccacgattcacgccgctattggatcactcagtccctgcacagcaaaccaccacggacgcccagaaaagccgcccacgcctgccgtcaaaaccagcctactaaaccacaagccacaaccatcttctctcccgacctcatcccccgagcattgaaatgcctatccaatagcaatcataaagacaacacggtcgaagccagcggtatccatgattgccgccggacagggaactatctagtggtgtttgtgctttctcgctggtgttatattagagatagaagtaaagtaaaaacaccattaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

282

Amino Acids

31.27

Weight (kDa)

9.46

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 731
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 372
AccI GTMKAC 1 cut(s) 412
AccII CGCG 1 cut(s) 473
AclWI GGATC 3 cut(s) 125, 301, 575
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 211
AcyI GRCGYC 2 cut(s) 543, 602
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 119, 372
AgsI TTSAA 3 cut(s) 73, 244, 697
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 4 cut(s) 30, 197, 326, 483
AluI AGCT 4 cut(s) 30, 197, 326, 483
Alw21I GWGCWC 2 cut(s) 199, 310
Alw26I GTCTC 2 cut(s) 36, 208
Alw44I GTGCAC 1 cut(s) 306
AlwI GGATC 3 cut(s) 125, 301, 575
AlwNI CAGNNNCTG 1 cut(s) 580
Ama87I CYCGRG 4 cut(s) 431, 465, 506, 687
AoxI GGCC 3 cut(s) 124, 362, 374
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 420
ApoI RAATTY 1 cut(s) 73
ArsI GACNNNNNNTTYG 2 cut(s) 378, 410
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 3 cut(s) 59, 425, 475
AspS9I GGNCC 2 cut(s) 125, 363
AsuHPI GGTGA 1 cut(s) 341
AvaI CYCGRG 4 cut(s) 431, 465, 506, 687
BaeGI GKGCMC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 3 cut(s) 199, 438, 513
BauI CACGAG 1 cut(s) 449
Bbv12I GWGCWC 2 cut(s) 199, 310
BbvI GCAGC 1 cut(s) 432
BccI CCATC 4 cut(s) 268, 293, 312, 671
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 758
BcoDI GTCTC 2 cut(s) 36, 208
BfaI CTAG 4 cut(s) 378, 515, 539, 779
BfmI CTRYAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 426
BfuI GTATCC 1 cut(s) 758
BisI GCNGC 7 cut(s) 421, 426, 471, 528, 559, 615, 760
BlsI GCNGC 7 cut(s) 422, 427, 472, 529, 560, 616, 761
Bme1390I CCNGG 1 cut(s) 315
BmeT110I CYCGRG 4 cut(s) 431, 465, 506, 687
BmgT120I GGNCC 2 cut(s) 125, 363
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpmI CTGGAG 2 cut(s) 303, 507
BpuEI CTTGAG 1 cut(s) 463
BsaHI GRCGYC 2 cut(s) 543, 602
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 596
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 372
Bse1I ACTGG 3 cut(s) 50, 182, 338
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 3 cut(s) 54, 323, 681
BseLI CCNNNNNNNGG 2 cut(s) 119, 372
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 3 cut(s) 50, 182, 338
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 1 cut(s) 432
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 735
BshFI GGCC 3 cut(s) 126, 364, 376
BshNI GGYRCC 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 735
BsiHKAI GWGCWC 2 cut(s) 199, 310
BsiHKCI CYCGRG 4 cut(s) 431, 465, 506, 687
BsiSI CCGG 1 cut(s) 763
BslFI GGGAC 2 cut(s) 188, 562
BslI CCNNNNNNNGG 2 cut(s) 119, 372
BsmAI GTCTC 2 cut(s) 36, 208
BsmFI GGGAC 2 cut(s) 188, 562
BsnI GGCC 3 cut(s) 126, 364, 376
Bso31I GGTCTC 1 cut(s) 208
BsoBI CYCGRG 4 cut(s) 431, 465, 506, 687
Bsp1286I GDGCHC 4 cut(s) 199, 310, 438, 513
Bsp143I GATC 3 cut(s) 130, 293, 567
BspANI GGCC 3 cut(s) 126, 364, 376
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 3 cut(s) 125, 301, 575
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 208
BsrI ACTGG 3 cut(s) 50, 182, 338
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 3 cut(s) 130, 293, 567
BssNI GRCGYC 2 cut(s) 543, 602
BssSI CACGAG 1 cut(s) 449
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 257, 534, 733
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 2 cut(s) 543, 602
BstC8I GCNNGC 8 cut(s) 61, 65, 94, 406, 456, 497, 625, 742
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 596
BstF5I GGATG 3 cut(s) 54, 323, 681
BstFNI CGCG 1 cut(s) 473
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 3 cut(s) 59, 425, 475
BstKTI GATC 3 cut(s) 133, 296, 570
BstMAI GTCTC 2 cut(s) 36, 208
BstMBI GATC 3 cut(s) 130, 293, 567
BstMCI CGRYCG 1 cut(s) 735
BstMWI GCNNNNNNNGC 5 cut(s) 231, 405, 460, 524, 620
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 2 cut(s) 63, 96
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 293
BstXI CCANNNNNNTGG 2 cut(s) 104, 318
BstYI RGATCY 1 cut(s) 293
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 3 cut(s) 126, 364, 376
BtgI CCRYGG 1 cut(s) 596
BtsCI GGATG 3 cut(s) 54, 323, 681
BtsI GCAGTG 2 cut(s) 234, 310
BtsIMutI CAGTG 3 cut(s) 234, 262, 310
Cac8I GCNNGC 8 cut(s) 61, 65, 94, 406, 456, 497, 625, 742
CaiI CAGNNNCTG 1 cut(s) 580
CfoI GCGC 3 cut(s) 59, 425, 475
Cfr13I GGNCC 2 cut(s) 125, 363
CseI GACGC 2 cut(s) 551, 610
Csp6I GTAC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 4 cut(s) 60, 93, 271, 752
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 573
DpnI GATC 3 cut(s) 132, 295, 569
DpnII GATC 3 cut(s) 130, 293, 567
DraI TTTAAA 1 cut(s) 79
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 197
Eco24I GRGCYC 3 cut(s) 199, 438, 513
Eco31I GGTCTC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 211
Eco88I CYCGRG 4 cut(s) 431, 465, 506, 687
EcoICRI GAGCTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 313
EcoT38I GRGCYC 3 cut(s) 199, 438, 513
FaeI CATG 4 cut(s) 63, 96, 274, 755
FaqI GGGAC 2 cut(s) 188, 562
FatI CATG 4 cut(s) 59, 92, 270, 751
FauI CCCGC 2 cut(s) 78, 163
FauNDI CATATG 1 cut(s) 142
FblI GTMKAC 1 cut(s) 412
Fnu4HI GCNGC 7 cut(s) 421, 426, 471, 528, 559, 615, 760
FokI GGATG 3 cut(s) 61, 330, 668
FriOI GRGCYC 3 cut(s) 199, 438, 513
Fsp4HI GCNGC 7 cut(s) 421, 426, 471, 528, 559, 615, 760
FspBI CTAG 4 cut(s) 378, 515, 539, 779
GlaI GCGC 3 cut(s) 58, 424, 474
GluI GCNGC 7 cut(s) 421, 426, 471, 528, 559, 615, 760
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 2 cut(s) 303, 507
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 3 cut(s) 126, 364, 376
HapII CCGG 1 cut(s) 763
HgaI GACGC 2 cut(s) 551, 610
HhaI GCGC 3 cut(s) 59, 425, 475
Hin1I GRCGYC 2 cut(s) 543, 602
Hin1II CATG 4 cut(s) 63, 96, 274, 755
Hin6I GCGC 3 cut(s) 57, 423, 473
HinP1I GCGC 3 cut(s) 57, 423, 473
HinfI GANTC 1 cut(s) 551
HpaII CCGG 1 cut(s) 763
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 2 cut(s) 308, 413
Hpy188I TCNGA 2 cut(s) 230, 298
Hpy188III TCNNGA 2 cut(s) 282, 674
Hpy8I GTNNAC 2 cut(s) 308, 413
Hpy99I CGWCG 1 cut(s) 538
HpyCH4III ACNGT 3 cut(s) 257, 534, 733
HpyF10VI GCNNNNNNNGC 5 cut(s) 231, 405, 460, 524, 620
HpyF3I CTNAG 1 cut(s) 573
Hsp92I GRCGYC 2 cut(s) 543, 602
Hsp92II CATG 4 cut(s) 63, 96, 274, 755
HspAI GCGC 3 cut(s) 57, 423, 473
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 3 cut(s) 130, 293, 567
LmnI GCTCC 2 cut(s) 194, 488
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 1 cut(s) 221
MaeI CTAG 4 cut(s) 378, 515, 539, 779
MaeIII GTNAC 1 cut(s) 329
MalI GATC 3 cut(s) 132, 295, 569
MboI GATC 3 cut(s) 130, 293, 567
MboII GAAGA 3 cut(s) 33, 370, 658
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 4 cut(s) 199, 310, 438, 513
MluCI AATT 3 cut(s) 73, 202, 220
MseI TTAA 2 cut(s) 78, 842
MslI CAYNNNNRTG 3 cut(s) 204, 316, 697
MspA1I CMGCKG 1 cut(s) 744
MspI CCGG 1 cut(s) 763
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 5 cut(s) 231, 405, 460, 524, 620
NdeI CATATG 1 cut(s) 142
NdeII GATC 3 cut(s) 130, 293, 567
NlaIII CATG 4 cut(s) 63, 96, 274, 755
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 2 cut(s) 63, 96
PaeI GCATGC 2 cut(s) 63, 96
PaeR7I CTCGAG 3 cut(s) 431, 465, 506
PfeI GAWTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 372
PkrI GCNGC 7 cut(s) 422, 427, 472, 529, 560, 616, 761
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 125, 363
PspXI VCTCGAGB 3 cut(s) 431, 465, 506
PstNI CAGNNNCTG 1 cut(s) 580
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 3 cut(s) 204, 316, 697
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 78, 842
SatI GCNGC 7 cut(s) 421, 426, 471, 528, 559, 615, 760
Sau3AI GATC 3 cut(s) 130, 293, 567
Sau96I GGNCC 2 cut(s) 125, 363
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 4 cut(s) 199, 310, 438, 513
SetI ASST 6 cut(s) 32, 199, 328, 485, 507, 681
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 253
Sfr274I CTCGAG 3 cut(s) 431, 465, 506
SlaI CTCGAG 3 cut(s) 431, 465, 506
SmiMI CAYNNNNRTG 3 cut(s) 204, 316, 697
SmlI CTYRAG 4 cut(s) 431, 465, 478, 506
SmoI CTYRAG 4 cut(s) 431, 465, 478, 506
SphI GCATGC 2 cut(s) 63, 96
Sse9I AATT 3 cut(s) 73, 202, 220
SspMI CTAG 4 cut(s) 378, 515, 539, 779
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 257, 534, 733
TaqI TCGA 5 cut(s) 137, 432, 466, 507, 735
TasI AATT 3 cut(s) 73, 202, 220
TauI GCSGC 6 cut(s) 428, 473, 530, 561, 617, 762
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 2 cut(s) 78, 842
Tru9I TTAA 2 cut(s) 78, 842
TscAI CASTG 3 cut(s) 241, 262, 310
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 420
Tsp45I GTSAC 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 613
TspRI CASTG 3 cut(s) 241, 262, 310
Van91I CCANNNNNTGG 1 cut(s) 372
VneI GTGCAC 1 cut(s) 306
XapI RAATTY 1 cut(s) 73
XceI RCATGY 2 cut(s) 63, 96
XhoI CTCGAG 3 cut(s) 431, 465, 506
XmiI GTMKAC 1 cut(s) 412
XspI CTAG 4 cut(s) 378, 515, 539, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.