Rmu_co8266757.1_g000001

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8266757.1
OG0012950
Physical Location & Seq
Reverse (-)
181 .. 531
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8266757.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atgttgattgcatacacaggaagaatgagctgggcaggaggagactggatgtgtggcgcatgccagcacttgaattttaaaaagcgggaagcatgccaacgatgtgggtaccccaagtatggtggccctgatccctcgacatatggaagcaacagaacagaagtcttggcgggggactggttttgcaactgcggagctcacaattatgcacagagaccaaattgcttcagatgcactgcattgaaaaatgactacagtggtgggtataacatgatggcttctggaggctatggatctgatggcagtgcaccaccaggatggaaagctggtgactggatttgcaataggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

116

Amino Acids

12.72

Weight (kDa)

8.59

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 3 cut(s) 85, 170, 192
AclWI GGATC 2 cut(s) 125, 301
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 211
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 73, 244
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 3 cut(s) 30, 197, 326
AluI AGCT 3 cut(s) 30, 197, 326
Alw21I GWGCWC 2 cut(s) 199, 310
Alw26I GTCTC 2 cut(s) 36, 208
Alw44I GTGCAC 1 cut(s) 306
AlwI GGATC 2 cut(s) 125, 301
AoxI GGCC 1 cut(s) 124
ApaLI GTGCAC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 73
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 2 cut(s) 199, 310
BccI CCATC 3 cut(s) 268, 293, 312
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 36, 208
BfmI CTRYAG 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 50, 182, 338
BseBI CCWGG 1 cut(s) 315
BseGI GGATG 2 cut(s) 54, 323
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 3 cut(s) 50, 182, 338
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 199, 310
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 36, 208
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 199, 310
Bsp143I GATC 2 cut(s) 130, 293
BspACI CCGC 3 cut(s) 85, 170, 192
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 2 cut(s) 125, 301
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 208
BsrI ACTGG 3 cut(s) 50, 182, 338
BssMI GATC 2 cut(s) 130, 293
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 61, 65, 94
BstF5I GGATG 2 cut(s) 54, 323
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 133, 296
BstMAI GTCTC 2 cut(s) 36, 208
BstMBI GATC 2 cut(s) 130, 293
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 2 cut(s) 63, 96
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 293
BstXI CCANNNNNNTGG 2 cut(s) 104, 318
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 54, 323
BtsI GCAGTG 2 cut(s) 234, 310
BtsIMutI CAGTG 3 cut(s) 234, 262, 310
Cac8I GCNNGC 3 cut(s) 61, 65, 94
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 3 cut(s) 60, 93, 271
CviJI RGCY 6 cut(s) 30, 126, 197, 278, 288, 326
CviKI_1 RGCY 6 cut(s) 30, 126, 197, 278, 288, 326
CviQI GTAC 1 cut(s) 109
DpnI GATC 2 cut(s) 132, 295
DpnII GATC 2 cut(s) 130, 293
DraI TTTAAA 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 3 cut(s) 63, 96, 274
FaqI GGGAC 1 cut(s) 188
FatI CATG 3 cut(s) 59, 92, 270
FauI CCCGC 2 cut(s) 78, 163
FauNDI CATATG 1 cut(s) 142
FokI GGATG 2 cut(s) 61, 330
FriOI GRGCYC 1 cut(s) 199
GlaI GCGC 1 cut(s) 58
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 126
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 63, 96, 274
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 2 cut(s) 230, 298
Hpy188III TCNNGA 1 cut(s) 282
Hpy8I GTNNAC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 7 cut(s) 11, 186, 209, 234, 239, 308, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 63, 96, 274
HspAI GCGC 1 cut(s) 57
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 130, 293
LmnI GCTCC 1 cut(s) 194
LweI GCATC 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 132, 295
MboI GATC 2 cut(s) 130, 293
MboII GAAGA 1 cut(s) 33
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 199, 310
MluCI AATT 3 cut(s) 73, 202, 220
MnlI CCTC 3 cut(s) 32, 145, 278
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 2 cut(s) 204, 316
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 130, 293
NlaIII CATG 3 cut(s) 63, 96, 274
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 2 cut(s) 63, 96
PaeI GCATGC 2 cut(s) 63, 96
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 2 cut(s) 204, 316
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 2 cut(s) 130, 293
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 199, 310
SetI ASST 4 cut(s) 32, 199, 328, 350
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 204, 316
SphI GCATGC 2 cut(s) 63, 96
Sse9I AATT 3 cut(s) 73, 202, 220
SsiI CCGC 3 cut(s) 85, 170, 192
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 73, 202, 220
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 3 cut(s) 241, 262, 310
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspRI CASTG 3 cut(s) 241, 262, 310
VneI GTGCAC 1 cut(s) 306
XapI RAATTY 1 cut(s) 73
XceI RCATGY 2 cut(s) 63, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.