Rh2DG042500

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012950
Physical Location & Seq
Reverse (-)
2934334 .. 2940222
5889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG042500.1

Sequence Viewer

Length: 447 bp
ATGAGCTGGGCAGGAGGAGACTGGATGTGTGGCGCATGCCAGCACTTGAATTTTAAAAAGCGGGAAGCATGCCAACGATGTGGGTACCCCAAGTATGGTGGCCCTGATCCCTCGACATATGGAAGCAACAGAACAGAAGTCTTGGCGGGGGACTGGTTTTGCAACTGTGGAGCTCACAATTATGCACAGAGACCAAATTGCTTCAGATGCACTGCATTGAAAAATGACTACAGTGGTGGTTATAACATGATGGCTTCTGGAGGCTATGGATCTGATGGCAGTGCACCACCAGGATGGAAAGCTGGTGACTGGATTTGCAATAGAGCCGGATGTGGAGTGCACAATTATGCTAACCGGCAAGAATGTTTTAAATGCAAAACTTCAAAGGACTACAAGCCTGCTTGTTGTTTTGATCATCATCTGAGGCAAGGTTTGACTAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

148

Amino Acids

16.36

Weight (kDa)

8.64

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 100 - 129 8.1e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 2 cut(s) 61, 146
AclWI GGATC 2 cut(s) 101, 277
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 49, 220, 384
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 6, 173, 302
AluI AGCT 3 cut(s) 6, 173, 302
Alw21I GWGCWC 3 cut(s) 175, 286, 342
Alw26I GTCTC 2 cut(s) 12, 184
Alw44I GTGCAC 2 cut(s) 282, 338
AlwI GGATC 2 cut(s) 101, 277
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 2 cut(s) 282, 338
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 2 cut(s) 286, 342
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 3 cut(s) 175, 286, 342
BccI CCATC 3 cut(s) 244, 269, 288
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 12, 184
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 3 cut(s) 26, 158, 314
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 30, 299, 335
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 3 cut(s) 26, 158, 314
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 286, 342
BseYI CCCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 3 cut(s) 175, 286, 342
BsiSI CCGG 2 cut(s) 327, 355
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 12, 184
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 3 cut(s) 175, 286, 342
Bsp143I GATC 3 cut(s) 106, 269, 412
BspACI CCGC 2 cut(s) 61, 146
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 101, 277
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 3 cut(s) 26, 158, 314
BssAI RCCGGY 1 cut(s) 354
BssMI GATC 3 cut(s) 106, 269, 412
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 167, 233
BstC8I GCNNGC 4 cut(s) 37, 41, 70, 399
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 3 cut(s) 30, 299, 335
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 3 cut(s) 109, 272, 415
BstMAI GTCTC 2 cut(s) 12, 184
BstMBI GATC 3 cut(s) 106, 269, 412
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 39, 72
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 229
BstSLI GKGCMC 2 cut(s) 286, 342
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 2 cut(s) 80, 294
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 3 cut(s) 30, 299, 335
BtsI GCAGTG 2 cut(s) 210, 286
BtsIMutI CAGTG 3 cut(s) 210, 238, 286
Cac8I GCNNGC 4 cut(s) 37, 41, 70, 399
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 36, 69, 247
CviJI RGCY 8 cut(s) 6, 102, 173, 254, 264, 302, 326, 397
CviKI_1 RGCY 8 cut(s) 6, 102, 173, 254, 264, 302, 326, 397
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 422
DpnI GATC 3 cut(s) 108, 271, 414
DpnII GATC 3 cut(s) 106, 269, 412
DraI TTTAAA 2 cut(s) 55, 370
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 39, 72, 250
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 35, 68, 246
FauI CCCGC 2 cut(s) 54, 139
FauNDI CATATG 1 cut(s) 118
FbaI TGATCA 1 cut(s) 412
FokI GGATG 3 cut(s) 37, 306, 342
FriOI GRGCYC 1 cut(s) 175
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 327, 355
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 39, 72, 250
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HpaII CCGG 2 cut(s) 327, 355
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 284, 340
Hpy188I TCNGA 4 cut(s) 206, 274, 423, 446
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 284, 340
HpyCH4III ACNGT 2 cut(s) 167, 233
HpyCH4V TGCA 8 cut(s) 162, 185, 210, 215, 284, 318, 340, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 422
Hsp92II CATG 3 cut(s) 39, 72, 250
HspAI GCGC 1 cut(s) 33
KpnI GGTACC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 106, 269, 412
LmnI GCTCC 1 cut(s) 170
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 108, 271, 414
MboI GATC 3 cut(s) 106, 269, 412
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 3 cut(s) 175, 286, 342
MluCI AATT 4 cut(s) 49, 178, 196, 343
MnlI CCTC 4 cut(s) 8, 121, 254, 417
MseI TTAA 2 cut(s) 54, 369
MslI CAYNNNNRTG 3 cut(s) 180, 292, 345
MspI CCGG 2 cut(s) 327, 355
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeI CATATG 1 cut(s) 118
NdeII GATC 3 cut(s) 106, 269, 412
NlaIII CATG 3 cut(s) 39, 72, 250
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 2 cut(s) 39, 72
PaeI GCATGC 2 cut(s) 39, 72
PsiI TTATAA 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 3 cut(s) 180, 292, 345
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 54, 369
Sau3AI GATC 3 cut(s) 106, 269, 412
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 175, 286, 342
SetI ASST 4 cut(s) 8, 175, 304, 433
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 229
SmiMI CAYNNNNRTG 3 cut(s) 180, 292, 345
SpeI ACTAGT 1 cut(s) 437
SphI GCATGC 2 cut(s) 39, 72
Sse9I AATT 4 cut(s) 49, 178, 196, 343
SsiI CCGC 2 cut(s) 61, 146
SspMI CTAG 1 cut(s) 438
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 167, 233
TaqI TCGA 1 cut(s) 113
TasI AATT 4 cut(s) 49, 178, 196, 343
Tru1I TTAA 2 cut(s) 54, 369
Tru9I TTAA 2 cut(s) 54, 369
TscAI CASTG 3 cut(s) 217, 238, 286
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspRI CASTG 3 cut(s) 217, 238, 286
VneI GTGCAC 2 cut(s) 282, 338
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 39, 72
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.