MD02G1035800.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012950
Physical Location & Seq
Reverse (-)
2720860 .. 2722899
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1035800.v1.1.491

Sequence Viewer

Length: 384 bp
ATGTGCGGAGCATGCCAGCATGTGAACTTTAAAAAGCGCGACGCTTGCCAACGTTGCGGGTACCCCAAGTATGGCGGACCTGATCCATCAAAATATGGATGCAACCGGACAGAGGTCTTGGCTGGAGACTGGTATTGCAACTGTGGAGCTCATAACTATGCCAGCAGACCCAATTGCTATAGGTGCAGCTCAATGAAAAATGACTATGGTGGTGCTGCCTACAGCATGATGCCTTCTGCAGAAGGCTATGGTTCCGATGCCAGCGCCCCACCTGGATGGAAATCTGGCGACTGGATGTGCAATAGAGTTGGATGTGGAGTGCACAATTACGCCAGCCGAATGGAATGCTTCAAATGCAAAACACCTAAGGATTACGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

128

Amino Acids

13.98

Weight (kDa)

8.67

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 94 - 123 5.4e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AccII CGCG 1 cut(s) 39
AciI CCGC 3 cut(s) 6, 57, 75
AclI AACGTT 1 cut(s) 52
AclWI GGATC 1 cut(s) 77
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 71, 112
AgsI TTSAA 1 cut(s) 352
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 149, 189
AluI AGCT 2 cut(s) 149, 189
Alw21I GWGCWC 2 cut(s) 151, 324
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 320
AlwI GGATC 1 cut(s) 77
ApaLI GTGCAC 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 186, 215
Asp718I GGTACC 1 cut(s) 60
AspLEI GCGC 2 cut(s) 39, 266
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 151, 324
BbvI GCAGC 2 cut(s) 198, 202
BccI CCATC 2 cut(s) 94, 270
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 120
BfmI CTRYAG 3 cut(s) 178, 220, 237
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 2 cut(s) 187, 216
BlsI GCNGC 2 cut(s) 188, 217
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 62, 253
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 3 cut(s) 89, 219, 247
BoxI GACNNNNGTC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 112
Bse1I ACTGG 2 cut(s) 134, 296
Bse21I CCTNAGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 280
BseBI CCWGG 1 cut(s) 273
BseGI GGATG 4 cut(s) 104, 281, 300, 317
BseJI GATNNNNATC 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 71, 112
BseNI ACTGG 2 cut(s) 134, 296
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 2 cut(s) 198, 202
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 151, 324
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 71, 112
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 151, 324
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 3 cut(s) 6, 57, 75
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 62, 253
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 134, 296
BssMI GATC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 143, 377
BstC8I GCNNGC 6 cut(s) 13, 17, 46, 163, 262, 334
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 104, 281, 300, 317
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 2 cut(s) 39, 266
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 12, 45, 54, 183, 354
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 2 cut(s) 15, 23
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 3 cut(s) 178, 220, 237
BstSLI GKGCMC 1 cut(s) 324
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 198, 202
BstXI CCANNNNNNTGG 2 cut(s) 276, 340
Bsu36I CCTNAGG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 104, 281, 300, 317
Cac8I GCNNGC 6 cut(s) 13, 17, 46, 163, 262, 334
CfoI GCGC 2 cut(s) 39, 266
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 12, 20, 226
CviJI RGCY 5 cut(s) 122, 149, 189, 246, 336
CviKI_1 RGCY 5 cut(s) 122, 149, 189, 246, 336
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraI TTTAAA 1 cut(s) 31
EciI GGCGGA 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 3 cut(s) 15, 23, 229
FatI CATG 3 cut(s) 11, 19, 225
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 187, 216
FokI GGATG 4 cut(s) 111, 288, 307, 324
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 187, 216
GlaI GCGC 2 cut(s) 38, 265
GluI GCNGC 2 cut(s) 187, 216
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 267
HapII CCGG 1 cut(s) 106
HgaI GACGC 1 cut(s) 50
HhaI GCGC 2 cut(s) 39, 266
Hin1II CATG 3 cut(s) 15, 23, 229
Hin6I GCGC 2 cut(s) 37, 264
HinP1I GCGC 2 cut(s) 37, 264
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 25, 322
Hpy188I TCNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 25, 322
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 236, 243
HpyCH4III ACNGT 2 cut(s) 143, 377
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 7 cut(s) 102, 138, 186, 239, 300, 322, 357
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 45, 54, 183, 354
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 3 cut(s) 15, 23, 229
HspAI GCGC 2 cut(s) 37, 264
KpnI GGTACC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 8, 146
Lsp1109I GCAGC 2 cut(s) 198, 202
LweI GCATC 3 cut(s) 89, 219, 247
MaeII ACGT 1 cut(s) 52
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MfeI CAATTG 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 151, 324
MluCI AATT 2 cut(s) 172, 325
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 1 cut(s) 106
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 2 cut(s) 156, 274
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 12, 45, 54, 183, 354
NdeII GATC 1 cut(s) 82
NlaIII CATG 3 cut(s) 15, 23, 229
NlaIV GGNNCC 2 cut(s) 62, 253
NspI RCATGY 2 cut(s) 15, 23
PaeI GCATGC 1 cut(s) 15
PctI GAATGC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 188, 217
PshAI GACNNNNGTC 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 62, 253
PspPI GGNCC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 241
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 2 cut(s) 156, 274
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 2 cut(s) 187, 216
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 2 cut(s) 151, 324
SetI ASST 8 cut(s) 55, 82, 117, 151, 185, 191, 274, 367
SfaNI GCATC 3 cut(s) 89, 219, 247
SfcI CTRYAG 3 cut(s) 178, 220, 237
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 156, 274
SphI GCATGC 1 cut(s) 15
Sse9I AATT 2 cut(s) 172, 325
SsiI CCGC 3 cut(s) 6, 57, 75
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 143, 377
TaiI ACGT 1 cut(s) 55
TasI AATT 2 cut(s) 172, 325
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseI GCWGC 2 cut(s) 186, 215
TspDTI ATGAA 1 cut(s) 209
VneI GTGCAC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 77
XceI RCATGY 2 cut(s) 15, 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.