Prupe.7G239400_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012950
Physical Location & Seq
Forward (+)
20658599 .. 20660090
1492 bp
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UTR
Exon/CDS
Intron
Prupe.7G239400.1

Sequence Viewer

Length: 402 bp
ATGAGCTGGGCAGGAGGAGATTGGATGTGTGGTGCATGCCAGCACTTGAATTTTAAGAAGCGCGACACATGCCAACGTTGCGAGTACCCCAAGTATGGTGGCCCTGATCCATCAACATATATATGCAACAGGACGGAGGTGTTGGCAGGGGACTGGTACTGCAACTGTGGAACTCACAACTATGCCAGCAGACCCAATTGCTTTAGATGTAGTGCAATGAAAAGTGACTATGGCGGTGCCTATAGCATGATGCCTTCTGCTGCCTATGGATCTGATGGCAGTTCCCCACCTGGATGGAAATCTGGTGACTGGATGTGCAATAGAGTTGGATGTGGAGTGCACAATTACGCGAGTCGGACAGAATGCTTCAAATGCAAAACACCAAGAGATTATGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

8.4

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 2 cut(s) 63, 350
AciI CCGC 1 cut(s) 234
AclI AACGTT 1 cut(s) 76
AclWI GGATC 2 cut(s) 101, 277
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 86, 158
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 49, 370
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw21I GWGCWC 1 cut(s) 342
Alw44I GTGCAC 1 cut(s) 338
AlwI GGATC 2 cut(s) 101, 277
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 247
BccI CCATC 3 cut(s) 118, 269, 288
BciT130I CCWGG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 158, 314
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 298
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 4 cut(s) 30, 299, 318, 335
BseJI GATNNNNATC 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 158, 314
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 1 cut(s) 247
BseYI CCCAGC 1 cut(s) 6
Bsh1236I CGCG 2 cut(s) 63, 350
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 106, 269
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 102
BspFNI CGCG 2 cut(s) 63, 350
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 2 cut(s) 101, 277
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 158, 314
BssMI GATC 2 cut(s) 106, 269
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 37, 41, 187
BstF5I GGATG 4 cut(s) 30, 299, 318, 335
BstFNI CGCG 2 cut(s) 63, 350
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 109, 272
BstMBI GATC 2 cut(s) 106, 269
BstMWI GCNNNNNNNGC 3 cut(s) 69, 78, 372
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 39, 72
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 2 cut(s) 63, 350
BstV1I GCAGC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 294
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 4 cut(s) 30, 299, 318, 335
Cac8I GCNNGC 3 cut(s) 37, 41, 187
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 85, 157
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 36, 69, 247
CviJI RGCY 2 cut(s) 6, 102
CviKI_1 RGCY 2 cut(s) 6, 102
CviQI GTAC 2 cut(s) 85, 157
DpnI GATC 2 cut(s) 108, 271
DpnII GATC 2 cut(s) 106, 269
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 3 cut(s) 39, 72, 250
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 35, 68, 246
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 4 cut(s) 37, 306, 325, 342
Fsp4HI GCNGC 1 cut(s) 261
GlaI GCGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 261
GsaI CCCAGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 102
HhaI GCGC 1 cut(s) 63
Hin1II CATG 3 cut(s) 39, 72, 250
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 352
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 2 cut(s) 274, 357
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 7 cut(s) 35, 126, 162, 215, 318, 340, 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 78, 372
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 3 cut(s) 39, 72, 250
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 106, 269
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 240
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 224, 305
MalI GATC 2 cut(s) 108, 271
MboI GATC 2 cut(s) 106, 269
MfeI CAATTG 1 cut(s) 196
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 3 cut(s) 49, 196, 343
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 2 cut(s) 307, 335
MnlI CCTC 2 cut(s) 8, 130
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 3 cut(s) 121, 180, 292
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 2 cut(s) 63, 350
MwoI GCNNNNNNNGC 3 cut(s) 69, 78, 372
NdeII GATC 2 cut(s) 106, 269
NlaIII CATG 3 cut(s) 39, 72, 250
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 224, 305
NspI RCATGY 2 cut(s) 39, 72
PaeI GCATGC 1 cut(s) 39
PctI GAATGC 1 cut(s) 368
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Psp1406I AACGTT 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 2 cut(s) 86, 158
RsaNI GTAC 2 cut(s) 85, 157
RseI CAYNNNNRTG 3 cut(s) 121, 180, 292
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 106, 269
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 342
SetI ASST 4 cut(s) 8, 79, 141, 292
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 241
SmiMI CAYNNNNRTG 3 cut(s) 121, 180, 292
SphI GCATGC 1 cut(s) 39
Sse9I AATT 3 cut(s) 49, 196, 343
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 79
TasI AATT 3 cut(s) 49, 196, 343
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 2 cut(s) 224, 305
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 224, 305
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 149
VneI GTGCAC 1 cut(s) 338
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 39, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.