MD15G1176000.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012950
Physical Location & Seq
Reverse (-)
13751418 .. 13753093
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1176000.v1.1.491

Sequence Viewer

Length: 375 bp
ATGTGCGGAGCATGCCAGCACACGAACTTTAAAAAGCGCGATGAGTGTCAACGTTGCGGGTACCCCAAGTATGGCGGACCTGATCCATCAACATATGGATGCAACCGGACGGAGGTCTTGGCCGGGGACTGGTACTGCAACTGTGGAGCTCACAACTATGCCAGCAGACCCAATTGCTATAGGTGCAGCTCAATGAAAACTGACTATGGTGGTAGCATGATGCCTTCTGCAGGAGGCTATGGTTCCGATGCCAGCGCCCCACCTGGATGGAAACCCGGCGACTGGATGTGCAGTAGAGTTGGATGTGGAGTGCACAATTACGCGAGCCGAATGGAATGCTTCAAATGCAAAACACCAAGAGATTATGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

125

Amino Acids

13.64

Weight (kDa)

8.56

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 91 - 120 3e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AccII CGCG 2 cut(s) 39, 323
AciI CCGC 3 cut(s) 6, 57, 75
AclI AACGTT 1 cut(s) 52
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 2 cut(s) 62, 134
AfiI CCNNNNNNNGG 5 cut(s) 71, 112, 129, 230, 282
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 2 cut(s) 149, 189
AluI AGCT 2 cut(s) 149, 189
Alw21I GWGCWC 2 cut(s) 151, 315
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 186
Asp718I GGTACC 1 cut(s) 60
AspLEI GCGC 2 cut(s) 39, 257
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 2 cut(s) 124, 276
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 151, 315
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 94, 261
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 264
BcnI CCSGG 2 cut(s) 124, 276
BfmI CTRYAG 2 cut(s) 178, 228
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 124, 264, 276
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 62, 244
BmrFI CCNGG 3 cut(s) 124, 264, 276
BmsI GCATC 3 cut(s) 89, 210, 238
BoxI GACNNNNGTC 1 cut(s) 113
BpuMI CCSGG 2 cut(s) 124, 276
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 112, 129, 230, 282
Bse1I ACTGG 2 cut(s) 134, 287
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 4 cut(s) 104, 272, 291, 308
BseLI CCNNNNNNNGG 5 cut(s) 71, 112, 129, 230, 282
BseNI ACTGG 2 cut(s) 134, 287
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 1 cut(s) 198
BsgI GTGCAG 2 cut(s) 205, 310
Bsh1236I CGCG 2 cut(s) 39, 323
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 151, 315
BsiSI CCGG 3 cut(s) 106, 123, 276
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 5 cut(s) 71, 112, 129, 230, 282
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 151, 315
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 3 cut(s) 6, 57, 75
BspANI GGCC 1 cut(s) 122
BspFNI CGCG 2 cut(s) 39, 323
BspLI GGNNCC 2 cut(s) 62, 244
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 134, 287
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 143
BstC8I GCNNGC 5 cut(s) 13, 17, 163, 253, 325
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 4 cut(s) 104, 272, 291, 308
BstFNI CGCG 2 cut(s) 39, 323
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 2 cut(s) 39, 257
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 12, 183, 345
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 15
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 3 cut(s) 122, 262, 274
BstSFI CTRYAG 2 cut(s) 178, 228
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 2 cut(s) 39, 323
BstV1I GCAGC 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 4 cut(s) 104, 272, 291, 308
Cac8I GCNNGC 5 cut(s) 13, 17, 163, 253, 325
CfoI GCGC 2 cut(s) 39, 257
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 61, 133
CviAII CATG 2 cut(s) 12, 217
CviJI RGCY 5 cut(s) 122, 149, 189, 237, 327
CviKI_1 RGCY 5 cut(s) 122, 149, 189, 237, 327
CviQI GTAC 2 cut(s) 61, 133
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraI TTTAAA 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 120
EciI GGCGGA 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 2 cut(s) 15, 220
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 11, 216
FauI CCCGC 1 cut(s) 50
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 4 cut(s) 111, 279, 298, 315
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 187
GlaI GCGC 2 cut(s) 38, 256
GluI GCNGC 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 122
HapII CCGG 3 cut(s) 106, 123, 276
HhaI GCGC 2 cut(s) 39, 257
Hin1II CATG 2 cut(s) 15, 220
Hin6I GCGC 2 cut(s) 37, 255
HinP1I GCGC 2 cut(s) 37, 255
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
HpaII CCGG 3 cut(s) 106, 123, 276
Hpy166II GTNNAC 2 cut(s) 50, 313
Hpy188I TCNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 50, 313
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 7 cut(s) 102, 138, 186, 230, 291, 313, 348
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 183, 345
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 2 cut(s) 15, 220
HspAI GCGC 2 cut(s) 37, 255
KpnI GGTACC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 8, 146
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 3 cut(s) 89, 210, 238
MaeII ACGT 1 cut(s) 52
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MfeI CAATTG 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 151, 315
MluCI AATT 2 cut(s) 172, 316
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 2 cut(s) 106, 227
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 3 cut(s) 97, 156, 265
MspI CCGG 3 cut(s) 106, 123, 276
MspR9I CCNGG 3 cut(s) 124, 264, 276
MunI CAATTG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 2 cut(s) 39, 323
MwoI GCNNNNNNNGC 3 cut(s) 12, 183, 345
NciI CCSGG 2 cut(s) 124, 276
NdeI CATATG 1 cut(s) 94
NdeII GATC 1 cut(s) 82
NlaIII CATG 2 cut(s) 15, 220
NlaIV GGNNCC 2 cut(s) 62, 244
NspI RCATGY 1 cut(s) 15
PaeI GCATGC 1 cut(s) 15
PctI GAATGC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 62, 244
PspPI GGNCC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 2 cut(s) 62, 134
RsaNI GTAC 2 cut(s) 61, 133
RseI CAYNNNNRTG 3 cut(s) 97, 156, 265
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 3 cut(s) 124, 264, 276
SduI GDGCHC 2 cut(s) 151, 315
SetI ASST 7 cut(s) 55, 82, 117, 151, 185, 191, 265
SfaNI GCATC 3 cut(s) 89, 210, 238
SfcI CTRYAG 2 cut(s) 178, 228
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 97, 156, 265
SphI GCATGC 1 cut(s) 15
Sse9I AATT 2 cut(s) 172, 316
SsiI CCGC 3 cut(s) 6, 57, 75
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 122, 262, 274
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 55
TasI AATT 2 cut(s) 172, 316
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseI GCWGC 1 cut(s) 186
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 125
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 228
XceI RCATGY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.