FvH4_1g03630

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012950
Physical Location & Seq
Reverse (-)
1972298 .. 1974997
2700 bp
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UTR
Exon/CDS
Intron
FvH4_1g03630.t1

Sequence Viewer

Length: 387 bp
ATGAGCTGGGCAGGAGGAGACTGGATGTGTGGCGCATGCCAGCACTTGAATTTTAAAAAGAGAGAAGCATGCCAACGATGCGAATACCCTAAGTATGGTGGCCCTGATCCCTCAACATATGGATGCAACAGAACAGAAGTCTTGGCAGGGGACTGGTTTTGCAACTGTGGAGCTCACAACTATGCACAGAGACCAAATTGCTTCAGATGTGGTGCATTGAAAAATGACTACTGTGGTGGGTACAACATGATGGCTCCAGATGGCAGTGCACCACCAGGATGGAAAGCTGGTGACTGGATTTGCACTAGAGTCGGATGTGGAATGCACAATTATGCTAACCGGCAAGAATGTTACAAATGCAAAACTCCAAAGGACTACGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

129

Amino Acids

14.31

Weight (kDa)

8.37

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 49, 220
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 3 cut(s) 6, 173, 287
AluI AGCT 3 cut(s) 6, 173, 287
Alw21I GWGCWC 2 cut(s) 175, 271
Alw26I GTCTC 2 cut(s) 12, 184
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 175, 271
BccI CCATC 3 cut(s) 244, 254, 273
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 12, 184
BfaI CTAG 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 68, 113
BoxI GACNNNNGTC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 339
Bse1I ACTGG 3 cut(s) 26, 158, 299
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 4 cut(s) 30, 128, 284, 320
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 26, 158, 299
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 175, 271
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 12, 184
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 175, 271
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 339
BsrI ACTGG 3 cut(s) 26, 158, 299
BssAI RCCGGY 1 cut(s) 339
BssMI GATC 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 3 cut(s) 167, 233, 380
BstC8I GCNNGC 3 cut(s) 37, 41, 70
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 4 cut(s) 30, 128, 284, 320
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 2 cut(s) 12, 184
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 2 cut(s) 39, 72
BstPAI GACNNNNGTC 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 4 cut(s) 30, 128, 284, 320
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 37, 41, 70
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 241
CviAII CATG 3 cut(s) 36, 69, 247
CviJI RGCY 5 cut(s) 6, 102, 173, 254, 287
CviKI_1 RGCY 5 cut(s) 6, 102, 173, 254, 287
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraI TTTAAA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 39, 72, 250
FaiI YATR 8 cut(s) 37, 70, 96, 118, 120, 183, 248, 333
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 35, 68, 246
FauNDI CATATG 1 cut(s) 118
FokI GGATG 4 cut(s) 37, 135, 291, 327
FriOI GRGCYC 1 cut(s) 175
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 340
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 39, 72, 250
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 1 cut(s) 309
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 206, 314
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 269
HpyCH4III ACNGT 3 cut(s) 167, 233, 380
HpyCH4V TGCA 8 cut(s) 126, 162, 185, 215, 269, 303, 325, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 3 cut(s) 39, 72, 250
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 2 cut(s) 170, 259
LweI GCATC 2 cut(s) 68, 113
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 290, 350
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 175, 271
MluCI AATT 3 cut(s) 49, 196, 328
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 2 cut(s) 8, 121
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 4 cut(s) 121, 180, 277, 330
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeI CATATG 1 cut(s) 118
NdeII GATC 1 cut(s) 106
NlaIII CATG 3 cut(s) 39, 72, 250
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 2 cut(s) 39, 72
PaeI GCATGC 2 cut(s) 39, 72
PctI GAATGC 1 cut(s) 327
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 4 cut(s) 121, 180, 277, 330
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 2 cut(s) 175, 271
SetI ASST 3 cut(s) 8, 175, 289
SfaNI GCATC 2 cut(s) 68, 113
SmiMI CAYNNNNRTG 4 cut(s) 121, 180, 277, 330
SphI GCATGC 2 cut(s) 39, 72
Sse9I AATT 3 cut(s) 49, 196, 328
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 167, 233, 380
TasI AATT 3 cut(s) 49, 196, 328
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspRI CASTG 1 cut(s) 271
VneI GTGCAC 1 cut(s) 267
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 39, 72
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.