Rh2AG043400

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012950
Physical Location & Seq
Reverse (-)
3371488 .. 3371814
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG043400.1

Sequence Viewer

Length: 327 bp
ATGAGCTGGGCAGGAGGAGACTGGATGTGTGGCGCATGCCAGCACTTGAATTTTAAAAAGCGGGAAGCATGCCAACGATGTGGGTACCCCAAGTATGGTGGCCCTGACCCCTCGACATATGGAAGCAACAGAACAGAAGTCTTGGCGGGGGACTGGTTTTGCAGCTGCGGAGCTCACAATTATGCACAGAGACCAAATTGCTTCAGATGCACTGCATTGAAAAATGAGTACAGTGGTGGGTATAACATGATGGCTTCTGGAGGCTATGGATCTGATGGCAGTGCACCACCAGGATGGAAAGCTGGTGACTGGATTTGCAATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

108

Amino Acids

11.8

Weight (kDa)

8.39

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 3 cut(s) 61, 146, 168
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 2 cut(s) 86, 230
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 49, 220
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 6, 165, 173, 302
AluI AGCT 4 cut(s) 6, 165, 173, 302
Alw21I GWGCWC 2 cut(s) 175, 286
Alw26I GTCTC 2 cut(s) 12, 184
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 162, 165
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 175, 286
BbvI GCAGC 2 cut(s) 152, 174
BccI CCATC 3 cut(s) 244, 269, 288
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 12, 184
BisI GCNGC 2 cut(s) 163, 166
BlsI GCNGC 2 cut(s) 164, 167
Bme1390I CCNGG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 3 cut(s) 26, 158, 314
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 30, 299
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 26, 158, 314
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 2 cut(s) 152, 174
BseYI CCCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 175, 286
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 12, 184
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 175, 286
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 3 cut(s) 61, 146, 168
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 184
BsrI ACTGG 3 cut(s) 26, 158, 314
BssMI GATC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 37, 41, 70
BstF5I GGATG 2 cut(s) 30, 299
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 2 cut(s) 12, 184
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 39, 72
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 152, 174
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 2 cut(s) 80, 294
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 30, 299
BtsI GCAGTG 2 cut(s) 210, 286
BtsIMutI CAGTG 3 cut(s) 210, 238, 286
Cac8I GCNNGC 3 cut(s) 37, 41, 70
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 85, 229
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 36, 69, 247
CviJI RGCY 7 cut(s) 6, 102, 165, 173, 254, 264, 302
CviKI_1 RGCY 7 cut(s) 6, 102, 165, 173, 254, 264, 302
CviQI GTAC 2 cut(s) 85, 229
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DraI TTTAAA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 39, 72, 250
FaiI YATR 9 cut(s) 37, 70, 96, 118, 120, 183, 243, 248, 267
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 35, 68, 246
FauI CCCGC 2 cut(s) 54, 139
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 163, 166
FokI GGATG 2 cut(s) 37, 306
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 2 cut(s) 163, 166
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 163, 166
GsaI CCCAGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 102
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 39, 72, 250
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 206, 274
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 6 cut(s) 162, 185, 210, 215, 284, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 39, 72, 250
HspAI GCGC 1 cut(s) 33
KpnI GGTACC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 7, 53, 117, 139, 243, 276, 288, 295, 303
Lsp1109I GCAGC 2 cut(s) 152, 174
LweI GCATC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 175, 286
MluCI AATT 3 cut(s) 49, 178, 196
MnlI CCTC 3 cut(s) 8, 121, 254
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 2 cut(s) 180, 292
MspA1I CMGCKG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeI CATATG 1 cut(s) 118
NdeII GATC 1 cut(s) 269
NlaIII CATG 3 cut(s) 39, 72, 250
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 2 cut(s) 39, 72
PaeI GCATGC 2 cut(s) 39, 72
PkrI GCNGC 2 cut(s) 164, 167
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 165
RsaI GTAC 2 cut(s) 86, 230
RsaNI GTAC 2 cut(s) 85, 229
RseI CAYNNNNRTG 2 cut(s) 180, 292
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 163, 166
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 175, 286
SetI ASST 5 cut(s) 8, 167, 175, 304, 326
SfaNI GCATC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 180, 292
SphI GCATGC 2 cut(s) 39, 72
Sse9I AATT 3 cut(s) 49, 178, 196
SsiI CCGC 3 cut(s) 61, 146, 168
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 113
TasI AATT 3 cut(s) 49, 178, 196
TatI WGTACW 1 cut(s) 228
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 3 cut(s) 217, 238, 286
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 2 cut(s) 162, 165
Tsp45I GTSAC 1 cut(s) 305
TspRI CASTG 3 cut(s) 217, 238, 286
VneI GTGCAC 1 cut(s) 282
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 39, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.