Rroxscaffold_2G00152200

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012950
Physical Location & Seq
Forward (+)
89263607 .. 89265229
1623 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00152200.1

Sequence Viewer

Length: 402 bp
ATGAGCTGGGCAGGAGGAGACTGGATGTGTGGTGCATGCCAGCACTTGAATTTTAAAAAGCGGGAAGCATGCCAACGATGTGGGTACCCCAAGTATGGTGGCCCTGATCCCTCGACATATGGAAGCAACAGAACAGAAGTCTTGGCGGGGGACTGGTTTTGCAACTGCGGAGCTCACAACTATGCACAGAGACCAAATTGCTTCAGATGCACTGCATTGAAAAATGACTACAGTGGTGGGTATAACATGATGGCTTCTGGAGGCTATGGATCTGATGGCAGTGGACCACCAGGATGGAAAGCTGGTGACTGGATTTGCAATAGAGCCGGATGTGGAGTGCACAATTATGCTAACCGGCAAGAATGTTTTAAATGCAAAACTCCAAAGGACTACAGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

8.59

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 100 - 129 1.1e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 3 cut(s) 61, 146, 168
AclWI GGATC 2 cut(s) 101, 277
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 49, 220
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 6, 173, 302
AluI AGCT 3 cut(s) 6, 173, 302
Alw21I GWGCWC 2 cut(s) 175, 342
Alw26I GTCTC 2 cut(s) 12, 184
Alw44I GTGCAC 1 cut(s) 338
AlwI GGATC 2 cut(s) 101, 277
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 101, 284
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 175, 342
BccI CCATC 3 cut(s) 244, 269, 288
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 12, 184
BfmI CTRYAG 2 cut(s) 229, 391
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 101, 284
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 3 cut(s) 26, 158, 314
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 30, 299, 335
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 26, 158, 314
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 175, 342
BsiSI CCGG 2 cut(s) 327, 355
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 12, 184
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 175, 342
Bsp143I GATC 2 cut(s) 106, 269
BspACI CCGC 3 cut(s) 61, 146, 168
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 101, 277
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 3 cut(s) 26, 158, 314
BssAI RCCGGY 1 cut(s) 354
BssMI GATC 2 cut(s) 106, 269
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 233, 395
BstC8I GCNNGC 3 cut(s) 37, 41, 70
BstF5I GGATG 3 cut(s) 30, 299, 335
BstKTI GATC 2 cut(s) 109, 272
BstMAI GTCTC 2 cut(s) 12, 184
BstMBI GATC 2 cut(s) 106, 269
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 39, 72
BstPAI GACNNNNGTC 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 229, 391
BstSLI GKGCMC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 2 cut(s) 80, 294
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 3 cut(s) 30, 299, 335
BtsI GCAGTG 2 cut(s) 210, 286
BtsIMutI CAGTG 3 cut(s) 210, 238, 286
Cac8I GCNNGC 3 cut(s) 37, 41, 70
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 101, 284
Csp6I GTAC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 36, 69, 247
CviJI RGCY 7 cut(s) 6, 102, 173, 254, 264, 302, 326
CviKI_1 RGCY 7 cut(s) 6, 102, 173, 254, 264, 302, 326
CviQI GTAC 1 cut(s) 85
DpnI GATC 2 cut(s) 108, 271
DpnII GATC 2 cut(s) 106, 269
DraI TTTAAA 2 cut(s) 55, 370
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 39, 72, 250
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 35, 68, 246
FauI CCCGC 2 cut(s) 54, 139
FauNDI CATATG 1 cut(s) 118
FokI GGATG 3 cut(s) 37, 306, 342
FriOI GRGCYC 1 cut(s) 175
GsaI CCCAGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 327, 355
Hin1II CATG 3 cut(s) 39, 72, 250
HpaII CCGG 2 cut(s) 327, 355
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 284, 340
Hpy188I TCNGA 2 cut(s) 206, 274
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 284, 340
HpyCH4III ACNGT 2 cut(s) 233, 395
HpyCH4V TGCA 8 cut(s) 35, 162, 185, 210, 215, 318, 340, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 39, 72, 250
KpnI GGTACC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 106, 269
LmnI GCTCC 1 cut(s) 170
LweI GCATC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 108, 271
MboI GATC 2 cut(s) 106, 269
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 175, 342
MluCI AATT 3 cut(s) 49, 196, 343
MnlI CCTC 3 cut(s) 8, 121, 254
MseI TTAA 2 cut(s) 54, 369
MslI CAYNNNNRTG 3 cut(s) 180, 292, 345
MspI CCGG 2 cut(s) 327, 355
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 106, 269
NlaIII CATG 3 cut(s) 39, 72, 250
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 2 cut(s) 39, 72
PaeI GCATGC 2 cut(s) 39, 72
PshAI GACNNNNGTC 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 101, 284
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 3 cut(s) 180, 292, 345
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 54, 369
Sau3AI GATC 2 cut(s) 106, 269
Sau96I GGNCC 2 cut(s) 101, 284
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 175, 342
SetI ASST 3 cut(s) 8, 175, 304
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 2 cut(s) 229, 391
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 3 cut(s) 180, 292, 345
SphI GCATGC 2 cut(s) 39, 72
Sse9I AATT 3 cut(s) 49, 196, 343
SsiI CCGC 3 cut(s) 61, 146, 168
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 233, 395
TaqI TCGA 1 cut(s) 113
TasI AATT 3 cut(s) 49, 196, 343
Tru1I TTAA 2 cut(s) 54, 369
Tru9I TTAA 2 cut(s) 54, 369
TscAI CASTG 3 cut(s) 217, 238, 286
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspRI CASTG 3 cut(s) 217, 238, 286
VneI GTGCAC 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 39, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.