Rh2BG042200

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012950
Physical Location & Seq
Reverse (-)
2918901 .. 2919710
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG042200.1

Sequence Viewer

Length: 336 bp
ATGAGCTGGGCAGGAGGAGACTGGATGTGTGGCGCATGCCAGCACTTGAATTTTAAAAAGCGGGAAGCATGCCAACGATGTGGGTATCCCAAGTATGGTGGCCCTGATCCCTCGACATATGGAAGCAACAGAACAGAAGTCTTGGCGGGGGACTGGTTTTGCAACTGCGGAGCTCACAATTATGCACAGAGACCAAATTGCTTCAGATGCACTGCATTGAAAAATGACTACAGTGGTGGAGGCTATGGATCTGATGGCAGTGCACCACCAGGATGGAAAGCTGGTGACTGGATTTGCAATAGGTCTGTAATACATGATTCAGATGGTGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

111

Amino Acids

12.08

Weight (kDa)

6.78

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 61, 146, 168
AclWI GGATC 2 cut(s) 101, 256
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 49, 220
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 3 cut(s) 6, 173, 281
AluI AGCT 3 cut(s) 6, 173, 281
Alw21I GWGCWC 2 cut(s) 175, 265
Alw26I GTCTC 2 cut(s) 12, 184
Alw44I GTGCAC 1 cut(s) 261
AlwI GGATC 2 cut(s) 101, 256
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 175, 265
BccI CCATC 3 cut(s) 248, 267, 317
BciT130I CCWGG 1 cut(s) 270
BciVI GTATCC 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 12, 184
BfmI CTRYAG 1 cut(s) 229
BfuI GTATCC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 3 cut(s) 26, 158, 293
BseBI CCWGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 30, 278
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 26, 158, 293
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 175, 265
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 12, 184
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 175, 265
Bsp143I GATC 2 cut(s) 106, 248
BspACI CCGC 3 cut(s) 61, 146, 168
BspANI GGCC 1 cut(s) 102
BspPI GGATC 2 cut(s) 101, 256
BspTNI GGTCTC 1 cut(s) 184
BsrI ACTGG 3 cut(s) 26, 158, 293
BssMI GATC 2 cut(s) 106, 248
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 37, 41, 70
BstF5I GGATG 2 cut(s) 30, 278
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 109, 251
BstMAI GTCTC 2 cut(s) 12, 184
BstMBI GATC 2 cut(s) 106, 248
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 2 cut(s) 39, 72
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 229
BstSLI GKGCMC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 80, 273
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 30, 278
BtsI GCAGTG 2 cut(s) 210, 265
BtsIMutI CAGTG 3 cut(s) 210, 238, 265
Cac8I GCNNGC 3 cut(s) 37, 41, 70
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 36, 69, 314
CviJI RGCY 5 cut(s) 6, 102, 173, 243, 281
CviKI_1 RGCY 5 cut(s) 6, 102, 173, 243, 281
DpnI GATC 2 cut(s) 108, 250
DpnII GATC 2 cut(s) 106, 248
DraI TTTAAA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 39, 72, 317
FaiI YATR 8 cut(s) 37, 70, 96, 118, 120, 183, 246, 315
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 35, 68, 313
FauI CCCGC 2 cut(s) 54, 139
FauNDI CATATG 1 cut(s) 118
FokI GGATG 2 cut(s) 37, 285
FriOI GRGCYC 1 cut(s) 175
GlaI GCGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 102
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 39, 72, 317
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 1 cut(s) 317
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 206, 253, 322
Hpy8I GTNNAC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 6 cut(s) 162, 185, 210, 215, 263, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 39, 72, 317
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 106, 248
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 8 cut(s) 7, 53, 117, 139, 255, 267, 274, 282
LweI GCATC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 108, 250
MboI GATC 2 cut(s) 106, 248
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 175, 265
MluCI AATT 3 cut(s) 49, 178, 196
MnlI CCTC 3 cut(s) 8, 121, 233
MseI TTAA 2 cut(s) 54, 334
MslI CAYNNNNRTG 2 cut(s) 180, 271
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 106, 248
NlaIII CATG 3 cut(s) 39, 72, 317
NmuCI GTSAC 1 cut(s) 284
NspI RCATGY 2 cut(s) 39, 72
PaeI GCATGC 2 cut(s) 39, 72
PfeI GAWTC 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 268
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 248
RseI CAYNNNNRTG 2 cut(s) 180, 271
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 54, 334
Sau3AI GATC 2 cut(s) 106, 248
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 2 cut(s) 175, 265
SetI ASST 4 cut(s) 8, 175, 283, 305
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 229
SmiMI CAYNNNNRTG 2 cut(s) 180, 271
SphI GCATGC 2 cut(s) 39, 72
Sse9I AATT 3 cut(s) 49, 178, 196
SsiI CCGC 3 cut(s) 61, 146, 168
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 113
TasI AATT 3 cut(s) 49, 178, 196
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 2 cut(s) 54, 334
Tru9I TTAA 2 cut(s) 54, 334
TscAI CASTG 3 cut(s) 217, 238, 265
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspRI CASTG 3 cut(s) 217, 238, 265
VneI GTGCAC 1 cut(s) 261
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 39, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.