RLG00000015998

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012950
Physical Location & Seq
Reverse (-)
3076949 .. 3078897
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015998

Sequence Viewer

Length: 501 bp
ATGGATGAGAAGCACTCTTGGCGTGTGACGCACAGTTCAAGCAGAGCTACTACAGTCCCAATTCTTTTGTATTCTAAGTCCTTACAATCTTCAGGAAGAATGAGCTGGGCAGGAGGAGACTGGATGTGTGGCGCATGCCAGCACTTGAATTTTAAAAAGCGGGAAGCATGCCAACGATGTGGGTACCCCAAGTATGGTGGCCCTGATCCCTCGACATATGGAAGCAACAGAACAGAAGTCTTGGCGGGGGACTGGTTTTGCAACTGTGGAGCTCACAACTATGCACAGAGACCAAATTGCTTCAGATGCACTGCATTGAAAAATGATTACAGTGGTGGGTATAACATGATGGCTTCTGGAGGCTATGGATCTGATGGCAGTTCACCACCAGGATGGAAAGCTGGTGACTGGATTTGCAATAGAGCCGGATGTGGAGTGCACAATTATGCTAACCGGCAAGAATGTTTTAAATGCAAAACTCCAAAGGACTACGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

167

Amino Acids

18.34

Weight (kDa)

8.92

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 133 - 162 1.5e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26695 AT2G26695
fragaria_vesca FvH4_1g03630
malus_domestica MD02G1035800.v1.1 MD15G1176000.v1.1
prunus_persica Prupe.7G239400_v2.0.a1
pyrus_communis pycom02g02960
rosa_laevigata RLG00000015998
rosa_multiflora Rmu_co8266757.1_g000001 Rmu_sc0008909.1_g000001 Rmu_sc0016750.1_g000002
rosa_roxburghii Rroxscaffold_2G00152200
rosa_rugosa Rorug01G0487900
rosa_samantha Rh2AG043400 Rh2BG042200 Rh2CG043500 Rh2DG042500
rosa_wichuraiana Rw2G003420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 183
AciI CCGC 2 cut(s) 160, 245
AclWI GGATC 2 cut(s) 200, 376
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 75, 286
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 3 cut(s) 39, 148, 319
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 4 cut(s) 47, 105, 272, 401
AluI AGCT 4 cut(s) 47, 105, 272, 401
Alw21I GWGCWC 2 cut(s) 274, 441
Alw26I GTCTC 2 cut(s) 111, 283
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 2 cut(s) 200, 376
AoxI GGCC 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 148
Asp718I GGTACC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 375, 416
BaeGI GKGCMC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 274, 441
BccI CCATC 3 cut(s) 343, 368, 387
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 111, 283
BfmI CTRYAG 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 296
BoxI GACNNNNGTC 1 cut(s) 492
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 125, 257, 413
BseBI CCWGG 1 cut(s) 390
BseGI GGATG 4 cut(s) 10, 129, 398, 434
BseLI CCNNNNNNNGG 1 cut(s) 194
BseNI ACTGG 3 cut(s) 125, 257, 413
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 441
BseYI CCCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 274, 441
BsiSI CCGG 2 cut(s) 426, 454
BslFI GGGAC 2 cut(s) 41, 263
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 111, 283
BsmFI GGGAC 2 cut(s) 41, 263
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 274, 441
Bsp143I GATC 2 cut(s) 205, 368
BspACI CCGC 2 cut(s) 160, 245
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 2 cut(s) 200, 376
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 3 cut(s) 125, 257, 413
BssAI RCCGGY 1 cut(s) 453
BssMI GATC 2 cut(s) 205, 368
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 5 cut(s) 35, 55, 266, 332, 494
BstC8I GCNNGC 3 cut(s) 136, 140, 169
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 10, 129, 398, 434
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 2 cut(s) 208, 371
BstMAI GTCTC 2 cut(s) 111, 283
BstMBI GATC 2 cut(s) 205, 368
BstMWI GCNNNNNNNGC 3 cut(s) 19, 28, 306
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 2 cut(s) 138, 171
BstPAI GACNNNNGTC 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 368
BstXI CCANNNNNNTGG 2 cut(s) 179, 393
BstYI RGATCY 1 cut(s) 368
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 4 cut(s) 10, 129, 398, 434
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 309, 337
Cac8I GCNNGC 3 cut(s) 136, 140, 169
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 3 cut(s) 135, 168, 346
CviJI RGCY 8 cut(s) 47, 105, 201, 272, 353, 363, 401, 425
CviKI_1 RGCY 8 cut(s) 47, 105, 201, 272, 353, 363, 401, 425
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 207, 370
DpnII GATC 2 cut(s) 205, 368
DraI TTTAAA 2 cut(s) 154, 469
Ecl136II GAGCTC 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 75, 286
EcoICRI GAGCTC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 274
FaeI CATG 3 cut(s) 138, 171, 349
FaqI GGGAC 2 cut(s) 41, 263
FatI CATG 3 cut(s) 134, 167, 345
FauI CCCGC 2 cut(s) 153, 238
FauNDI CATATG 1 cut(s) 217
FokI GGATG 4 cut(s) 17, 136, 405, 441
FriOI GRGCYC 1 cut(s) 274
GlaI GCGC 1 cut(s) 133
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 1 cut(s) 201
HapII CCGG 2 cut(s) 426, 454
HgaI GACGC 1 cut(s) 37
HhaI GCGC 1 cut(s) 134
Hin1II CATG 3 cut(s) 138, 171, 349
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HpaII CCGG 2 cut(s) 426, 454
HphI GGTGA 2 cut(s) 375, 416
Hpy166II GTNNAC 2 cut(s) 383, 439
Hpy188I TCNGA 2 cut(s) 305, 373
Hpy188III TCNNGA 2 cut(s) 93, 357
Hpy8I GTNNAC 2 cut(s) 383, 439
HpyCH4III ACNGT 5 cut(s) 35, 55, 266, 332, 494
HpyCH4V TGCA 7 cut(s) 261, 284, 309, 314, 417, 439, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 28, 306
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 3 cut(s) 138, 171, 349
HspAI GCGC 1 cut(s) 132
KpnI GGTACC 1 cut(s) 187
Kzo9I GATC 2 cut(s) 205, 368
LmnI GCTCC 1 cut(s) 269
LweI GCATC 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 25, 404
MalI GATC 2 cut(s) 207, 370
MboI GATC 2 cut(s) 205, 368
MboII GAAGA 2 cut(s) 81, 108
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 274, 441
MluCI AATT 4 cut(s) 60, 148, 295, 442
MnlI CCTC 3 cut(s) 107, 220, 353
MseI TTAA 2 cut(s) 153, 468
MslI CAYNNNNRTG 3 cut(s) 279, 391, 444
MspI CCGG 2 cut(s) 426, 454
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 3 cut(s) 19, 28, 306
NdeI CATATG 1 cut(s) 217
NdeII GATC 2 cut(s) 205, 368
NlaIII CATG 3 cut(s) 138, 171, 349
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 25, 404
NspI RCATGY 2 cut(s) 138, 171
PaeI GCATGC 2 cut(s) 138, 171
PshAI GACNNNNGTC 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 3 cut(s) 279, 391, 444
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 153, 468
Sau3AI GATC 2 cut(s) 205, 368
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 2 cut(s) 274, 441
SetI ASST 4 cut(s) 49, 107, 274, 403
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 3 cut(s) 279, 391, 444
SphI GCATGC 2 cut(s) 138, 171
Sse9I AATT 4 cut(s) 60, 148, 295, 442
SsiI CCGC 2 cut(s) 160, 245
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 5 cut(s) 35, 55, 266, 332, 494
TaqI TCGA 1 cut(s) 212
TasI AATT 4 cut(s) 60, 148, 295, 442
Tru1I TTAA 2 cut(s) 153, 468
Tru9I TTAA 2 cut(s) 153, 468
TscAI CASTG 2 cut(s) 316, 337
TseFI GTSAC 2 cut(s) 25, 404
Tsp45I GTSAC 2 cut(s) 25, 404
TspRI CASTG 2 cut(s) 316, 337
VneI GTGCAC 1 cut(s) 437
XapI RAATTY 1 cut(s) 148
XceI RCATGY 2 cut(s) 138, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.