AT2G27080

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013178
Physical Location & Seq
Forward (+)
11563933 .. 11567504
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27080.2

Sequence Viewer

Length: 783 bp
ATGGCTGAACGAGTCTATCCCGCCGATTCACCACCACAAAGCGGACAATTCTCCGGCAACTTCAGCTCCGGCGAATTCCCCAAAAAACCAGCACCACCACCATCAACATACGTAATCCAAGTCCCAAAAGATCAAATCTACCGTATACCACCGCCGGAAAACGCACACCGCTTTGAACAACTCTCTCGTAAAAAAACCAACCGCAGTAACTGTAGATGCTGCTTCTGCTCATTCCTCGCCGCGGTTTTCATCTTAATCGTCCTCGCCGGAATATCCTTCGCGGTTCTCTACCTAATCTACCGTCCCGAAGCTCCTAAATACTCCATCGAAGGATTCTCTGTTTCCGGTATCAATCTGAATTCAACATCTCCGATTTCGCCGAGTTTTAACGTTACCGTTAGATCACGTAACGGTAACGGTAAAATCGGGGTTTACTACGAGAAAGAAAGCTCTGTTGATGTGTATTACAACGACGTTGATATAAGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAACGGTCGTTAAGTTGGTTTTAAGTGGTTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGAGATGCGTAATGAGGTGAGTAAGAAAACGGTGCCGTTTAAGTTGAAGATTAAAGCTCCGGTGAAGATTAAGTTTGGTTCTGTTAAGACGTGGACTATGATTGTTAATGTTGACTGTGATGTAACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGTGGATCTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

260

Amino Acids

28.98

Weight (kDa)

9.59

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 132 - 235 3e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 733
AccB1I GGYRCC 2 cut(s) 619, 730
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 242, 281
AciI CCGC 8 cut(s) 21, 42, 152, 169, 202, 240, 242, 281
AclI AACGTT 1 cut(s) 390
AclWI GGATC 1 cut(s) 780
AcsI RAATTY 2 cut(s) 74, 358
AcuI CTGAAG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 731
AfiI CCNNNNNNNGG 2 cut(s) 41, 241
AgsI TTSAA 3 cut(s) 176, 363, 634
AhlI ACTAGT 1 cut(s) 572
AjiI CACGTC 2 cut(s) 678, 769
AluBI AGCT 4 cut(s) 66, 311, 450, 644
AluI AGCT 4 cut(s) 66, 311, 450, 644
AlwI GGATC 1 cut(s) 780
AlwNI CAGNNNCTG 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 2 cut(s) 74, 358
AspLEI GCGC 1 cut(s) 733
AsuHPI GGTGA 3 cut(s) 21, 616, 661
BanI GGYRCC 2 cut(s) 619, 730
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 109, 332
BceAI ACGGC 3 cut(s) 607, 718, 744
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 734
BisI GCNGC 2 cut(s) 220, 240
BlsI GCNGC 2 cut(s) 221, 241
BmgBI CACGTC 2 cut(s) 678, 769
BmiI GGNNCC 2 cut(s) 621, 732
BmsI GCATC 2 cut(s) 206, 582
BsaAI YACGTR 2 cut(s) 112, 407
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 2 cut(s) 344, 646
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 241
Bse118I RCCGGY 2 cut(s) 499, 514
BseDI CCNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 41, 241
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 2 cut(s) 242, 281
Bsh1285I CGRYCG 1 cut(s) 534
BshNI GGYRCC 2 cut(s) 619, 730
BsiEI CGRYCG 1 cut(s) 534
BsiSI CCGG 8 cut(s) 54, 69, 155, 267, 345, 500, 515, 647
BslFI GGGAC 2 cut(s) 107, 288
BslI CCNNNNNNNGG 2 cut(s) 41, 241
BsmFI GGGAC 2 cut(s) 107, 288
Bsp143I GATC 3 cut(s) 130, 401, 772
BspACI CCGC 8 cut(s) 21, 42, 152, 169, 202, 240, 242, 281
BspFNI CGCG 2 cut(s) 242, 281
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 621, 732
BspPI GGATC 1 cut(s) 780
BspT107I GGYRCC 2 cut(s) 619, 730
BsrFI RCCGGY 2 cut(s) 499, 514
BssAI RCCGGY 2 cut(s) 499, 514
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 130, 401, 772
BssNAI GTATAC 1 cut(s) 146
BssNI GRCGYC 1 cut(s) 731
Bst1107I GTATAC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 731
BstBAI YACGTR 2 cut(s) 112, 407
BstC8I GCNNGC 1 cut(s) 516
BstDSI CCRYGG 1 cut(s) 240
BstFNI CGCG 2 cut(s) 242, 281
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 3 cut(s) 133, 404, 775
BstMBI GATC 3 cut(s) 130, 401, 772
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 2 cut(s) 63, 225
BstSFI CTRYAG 1 cut(s) 211
BstSNI TACGTA 1 cut(s) 112
BstUI CGCG 2 cut(s) 242, 281
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 772
BstYI RGATCY 1 cut(s) 772
BstZ17I GTATAC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 240
BtrI CACGTC 2 cut(s) 678, 769
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 210
CciI TCATGA 1 cut(s) 763
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 2 cut(s) 499, 514
Cfr42I CCGCGG 1 cut(s) 243
CviAII CATG 1 cut(s) 764
CviJI RGCY 6 cut(s) 5, 66, 311, 450, 514, 644
CviKI_1 RGCY 6 cut(s) 5, 66, 311, 450, 514, 644
DinI GGCGCC 1 cut(s) 732
DpnI GATC 3 cut(s) 132, 403, 774
DpnII GATC 3 cut(s) 130, 401, 772
DrdI GACNNNNNNGTC 1 cut(s) 733
DseDI GACNNNNNNGTC 1 cut(s) 733
Eco105I TACGTA 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 46
EcoRI GAATTC 2 cut(s) 74, 358
EgeI GGCGCC 1 cut(s) 732
EheI GGCGCC 1 cut(s) 732
FaeI CATG 1 cut(s) 767
FaiI YATR 7 cut(s) 109, 146, 482, 497, 581, 686, 765
FaqI GGGAC 2 cut(s) 107, 288
FatI CATG 1 cut(s) 763
FauI CCCGC 1 cut(s) 28
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 220, 240
Fsp4HI GCNGC 2 cut(s) 220, 240
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 732
GluI GCNGC 2 cut(s) 220, 240
HaeII RGCGCY 1 cut(s) 734
HapII CCGG 8 cut(s) 54, 69, 155, 267, 345, 500, 515, 647
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 1 cut(s) 767
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 2 cut(s) 570, 700
HindII GTYRAC 2 cut(s) 570, 700
HinfI GANTC 3 cut(s) 12, 26, 333
HpaII CCGG 8 cut(s) 54, 69, 155, 267, 345, 500, 515, 647
HphI GGTGA 3 cut(s) 21, 616, 661
Hpy166II GTNNAC 5 cut(s) 146, 433, 570, 681, 700
Hpy188I TCNGA 2 cut(s) 357, 372
Hpy188III TCNNGA 3 cut(s) 305, 750, 764
Hpy8I GTNNAC 5 cut(s) 146, 433, 570, 681, 700
Hpy99I CGWCG 2 cut(s) 476, 739
HpyAV CCTTC 3 cut(s) 286, 323, 580
HpyCH4IV ACGT 6 cut(s) 111, 390, 406, 474, 677, 768
HpyCH4V TGCA 1 cut(s) 759
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 225
HpySE526I ACGT 6 cut(s) 111, 390, 406, 474, 677, 768
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 1 cut(s) 767
HspAI GCGC 1 cut(s) 731
KasI GGCGCC 1 cut(s) 730
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
KspI CCGCGG 1 cut(s) 243
Kzo9I GATC 3 cut(s) 130, 401, 772
LmnI GCTCC 3 cut(s) 71, 316, 649
LpnPI CCDG 9 cut(s) 67, 82, 102, 168, 280, 358, 513, 528, 660
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 2 cut(s) 206, 582
MaeI CTAG 1 cut(s) 573
MaeII ACGT 6 cut(s) 111, 390, 406, 474, 677, 768
MaeIII GTNAC 7 cut(s) 206, 391, 407, 413, 485, 526, 709
MalI GATC 3 cut(s) 132, 403, 774
MboI GATC 3 cut(s) 130, 401, 772
MboII GAAGA 3 cut(s) 532, 646, 664
MflI RGATCY 1 cut(s) 772
MluCI AATT 4 cut(s) 47, 74, 358, 722
Mly113I GGCGCC 1 cut(s) 731
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 5 cut(s) 245, 272, 576, 595, 732
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 9 cut(s) 254, 387, 537, 548, 627, 639, 657, 672, 693
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 8 cut(s) 54, 69, 155, 267, 345, 500, 515, 647
MvnI CGCG 2 cut(s) 242, 281
MwoI GCNNNNNNNGC 2 cut(s) 63, 225
NaeI GCCGGC 1 cut(s) 516
NarI GGCGCC 1 cut(s) 731
NdeII GATC 3 cut(s) 130, 401, 772
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 1 cut(s) 767
NlaIV GGNNCC 2 cut(s) 621, 732
NmeAIII GCCGAG 1 cut(s) 405
PagI TCATGA 1 cut(s) 763
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 26, 333
PkrI GCNGC 2 cut(s) 221, 241
PleI GAGTC 1 cut(s) 20
PluTI GGCGCC 1 cut(s) 734
PpsI GAGTC 1 cut(s) 20
Ppu21I YACGTR 2 cut(s) 112, 407
Psp1406I AACGTT 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 621, 732
PstNI CAGNNNCTG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 772
SacII CCGCGG 1 cut(s) 243
SaqAI TTAA 9 cut(s) 254, 387, 537, 548, 627, 639, 657, 672, 693
SatI GCNGC 2 cut(s) 220, 240
Sau3AI GATC 3 cut(s) 130, 401, 772
SchI GAGTC 1 cut(s) 21
SfaNI GCATC 2 cut(s) 206, 582
SfcI CTRYAG 1 cut(s) 211
SfoI GGCGCC 1 cut(s) 732
Sfr303I CCGCGG 1 cut(s) 243
SgrBI CCGCGG 1 cut(s) 243
SnaBI TACGTA 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 572
Sse9I AATT 4 cut(s) 47, 74, 358, 722
SsiI CCGC 8 cut(s) 21, 42, 152, 169, 202, 240, 242, 281
SspDI GGCGCC 1 cut(s) 730
SspMI CTAG 1 cut(s) 573
TaiI ACGT 6 cut(s) 114, 393, 409, 477, 680, 771
TaqI TCGA 3 cut(s) 327, 737, 749
TasI AATT 4 cut(s) 47, 74, 358, 722
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 2 cut(s) 26, 333
Tru1I TTAA 9 cut(s) 254, 387, 537, 548, 627, 639, 657, 672, 693
Tru9I TTAA 9 cut(s) 254, 387, 537, 548, 627, 639, 657, 672, 693
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 238
XapI RAATTY 2 cut(s) 74, 358
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.