RLG00000034674

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013178
Physical Location & Seq
Forward (+)
48015193 .. 48017671
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034674

Sequence Viewer

Length: 939 bp
ATGGCCGAACGAGTCCACCCGGGCGATTCGCCGGCTGCCCAAACGGCGCCGTTGCACGCCTCCAACGACAACAACAACAACAACAACTCTGGCCTCCCTCAGCCGGGGACCTACGTGGTCCAGATCCCCAAGGACCAAGTCTACCGCGTCCCACCGCCGGAGAACGCCACCCTCTACAAGAACTACACTCGCCAAAAGCCTCGCCGCAACTGCTGCCGCGTCTGTTTCTGCCGGATCCTCGGCATCCTTGCCTCTCTCATCCTCCTCTCCGCCATCGCCGCCGCCGTCTTCTACCTTGTCGTCCGCCCCGAGTCCCCCAACTACTCCGTCCAAAAAATCGCATTCAAAGGCTTCAACTTCACCGCCGCGTCGTCGTCGTCGTCATCGTCGTCGACCATCTCGCCGGTGATCGACGTGACCGTGCGTGCGGATAACCCTAACAGGAAAATCGGGATCTACTACGAGCGAGACAGCTCGGCCAACGTGTTCTACACTGACATCCAGTTGTGTGACGGCGCTCTGCCGGCGTTTTATCAGCCGCCGAAGAACGTGACGGAGTTGGAAACGGTGCTGACGGGGAGCGGGATCAGGCTGACGAGCGCGGTGCAAAAGGGGTTGGTGGAGGCGCAGAGCCAAGGCAAGGTGGCGTTGAAGTTGCATGTCCGAGCGCCCGTTAGAATCGAAGTGGGGTCCCTTAAGACGTGGACGATTACCGTTAAAGTTGACTGTGATTTAACGGTGGATAAGCTGACCGCAGACGCCAAGATTGTTTCTAAAGACTGCAACTACGTGGAATCAAGGCGAAGGAGATCACCGACCGGACTCTCCAATCCAAACCTTCTGATCGCAGAAGCCACCGTCAGTGAGCACGAAGATCAGCGCCGTCGTCTGTCCGACTACGACGAGGAGAGAGAGACAGAGCTTTCATGGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

313

Amino Acids

34.53

Weight (kDa)

8.89

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 140 - 243 7.5e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 582
AccI GTMKAC 2 cut(s) 141, 392
AccII CGCG 4 cut(s) 147, 219, 368, 602
AclWI GGATC 5 cut(s) 118, 229, 242, 461, 593
AcoI YGGCCR 2 cut(s) 3, 477
AcyI GRCGYC 2 cut(s) 47, 759
AfiI CCNNNNNNNGG 4 cut(s) 103, 104, 157, 640
AflII CTTAAG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 3 cut(s) 346, 355, 652
AjiI CACGTC 2 cut(s) 415, 702
AluBI AGCT 3 cut(s) 474, 748, 922
AluI AGCT 3 cut(s) 474, 748, 922
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 2 cut(s) 462, 908
AlwI GGATC 5 cut(s) 118, 229, 242, 461, 593
Ama87I CYCGRG 2 cut(s) 19, 308
AoxI GGCC 3 cut(s) 3, 91, 477
ApeKI GCWGC 2 cut(s) 35, 213
AspLEI GCGC 6 cut(s) 49, 518, 602, 628, 670, 882
AspS9I GGNCC 4 cut(s) 108, 118, 133, 690
AsuC2I CCSGG 3 cut(s) 20, 21, 105
AsuHPI GGTGA 3 cut(s) 352, 418, 804
AvaI CYCGRG 2 cut(s) 19, 308
AvaII GGWCC 4 cut(s) 108, 118, 133, 690
BamHI GGATCC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 870
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 22, 200
BccI CCATC 2 cut(s) 281, 404
BceAI ACGGC 5 cut(s) 34, 60, 269, 529, 867
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BcnI CCSGG 3 cut(s) 20, 21, 105
BcoDI GTCTC 2 cut(s) 462, 908
BfoI RGCGCY 4 cut(s) 50, 519, 671, 883
BfrI CTTAAG 1 cut(s) 695
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 8 cut(s) 36, 205, 214, 217, 279, 282, 366, 539
BlsI GCNGC 8 cut(s) 37, 206, 215, 218, 280, 283, 367, 540
Bme1390I CCNGG 3 cut(s) 20, 21, 105
Bme18I GGWCC 4 cut(s) 108, 118, 133, 690
BmeT110I CYCGRG 2 cut(s) 19, 308
BmgBI CACGTC 2 cut(s) 415, 702
BmgT120I GGNCC 4 cut(s) 108, 118, 133, 690
BmiI GGNNCC 5 cut(s) 48, 109, 236, 691, 692
BmrFI CCNGG 3 cut(s) 20, 21, 105
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 99
BpuMI CCSGG 3 cut(s) 20, 21, 105
BsaAI YACGTR 2 cut(s) 115, 790
BsaHI GRCGYC 2 cut(s) 47, 759
BsaJI CCNNGG 5 cut(s) 19, 104, 129, 238, 634
BsaWI WCCGGW 1 cut(s) 818
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 104, 157, 640
Bse118I RCCGGY 3 cut(s) 31, 403, 523
Bse1I ACTGG 1 cut(s) 502
BseDI CCNNGG 5 cut(s) 19, 104, 129, 238, 634
BseGI GGATG 3 cut(s) 243, 258, 498
BseLI CCNNNNNNNGG 4 cut(s) 103, 104, 157, 640
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 2 cut(s) 254, 920
BseXI GCAGC 2 cut(s) 22, 200
Bsh1236I CGCG 4 cut(s) 147, 219, 368, 602
Bsh1285I CGRYCG 1 cut(s) 819
BshFI GGCC 3 cut(s) 5, 93, 479
BshNI GGYRCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 819
BsiHKAI GWGCWC 1 cut(s) 870
BsiHKCI CYCGRG 2 cut(s) 19, 308
BsiSI CCGG 8 cut(s) 20, 32, 104, 158, 232, 404, 524, 819
BslFI GGGAC 4 cut(s) 121, 134, 298, 676
BslI CCNNNNNNNGG 4 cut(s) 103, 104, 157, 640
BsmAI GTCTC 2 cut(s) 462, 908
BsmFI GGGAC 4 cut(s) 121, 134, 298, 676
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 3 cut(s) 5, 93, 479
BsoBI CYCGRG 2 cut(s) 19, 308
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
BspANI GGCC 3 cut(s) 5, 93, 479
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 4 cut(s) 147, 219, 368, 602
BspLI GGNNCC 5 cut(s) 48, 109, 236, 691, 692
BspPI GGATC 5 cut(s) 118, 229, 242, 461, 593
BspT107I GGYRCC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 695
BsrBI CCGCTC 1 cut(s) 582
BsrFI RCCGGY 3 cut(s) 31, 403, 523
BsrI ACTGG 1 cut(s) 502
BssAI RCCGGY 3 cut(s) 31, 403, 523
BssECI CCNNGG 5 cut(s) 19, 104, 129, 238, 634
BssMI GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
BssNI GRCGYC 2 cut(s) 47, 759
BssT1I CCWWGG 2 cut(s) 129, 634
Bst4CI ACNGT 6 cut(s) 421, 568, 715, 728, 739, 859
BstACI GRCGYC 2 cut(s) 47, 759
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 213
BstBAI YACGTR 2 cut(s) 115, 790
BstC8I GCNNGC 4 cut(s) 33, 57, 426, 525
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 243, 258, 498
BstFNI CGCG 4 cut(s) 147, 219, 368, 602
BstH2I RGCGCY 4 cut(s) 50, 519, 671, 883
BstHHI GCGC 6 cut(s) 49, 518, 602, 628, 670, 882
BstKTI GATC 8 cut(s) 126, 237, 411, 456, 588, 812, 846, 877
BstMAI GTCTC 2 cut(s) 462, 908
BstMBI GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
BstMCI CGRYCG 1 cut(s) 819
BstMWI GCNNNNNNNGC 6 cut(s) 44, 210, 213, 278, 524, 928
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 3 cut(s) 18, 19, 103
BstUI CGCG 4 cut(s) 147, 219, 368, 602
BstV1I GCAGC 2 cut(s) 22, 200
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 3 cut(s) 123, 234, 453
BstYI RGATCY 3 cut(s) 123, 234, 453
BsuRI GGCC 3 cut(s) 5, 93, 479
BtgZI GCGATG 1 cut(s) 259
BtrI CACGTC 2 cut(s) 415, 702
BtsCI GGATG 3 cut(s) 243, 258, 498
BtsIMutI CAGTG 2 cut(s) 492, 868
Cac8I GCNNGC 4 cut(s) 33, 57, 426, 525
CfoI GCGC 6 cut(s) 49, 518, 602, 628, 670, 882
Cfr10I RCCGGY 3 cut(s) 31, 403, 523
Cfr13I GGNCC 4 cut(s) 108, 118, 133, 690
Cfr9I CCCGGG 1 cut(s) 19
CseI GACGC 4 cut(s) 136, 208, 357, 767
CviAII CATG 2 cut(s) 659, 927
DdeI CTNAG 1 cut(s) 99
DinI GGCGCC 1 cut(s) 48
DpnI GATC 8 cut(s) 125, 236, 410, 455, 587, 811, 845, 876
DpnII GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
EaeI YGGCCR 2 cut(s) 3, 477
EciI GGCGGA 2 cut(s) 259, 293
Eco130I CCWWGG 2 cut(s) 129, 634
Eco47I GGWCC 4 cut(s) 108, 118, 133, 690
Eco88I CYCGRG 2 cut(s) 19, 308
EcoO109I RGGNCCY 2 cut(s) 108, 690
EcoT14I CCWWGG 2 cut(s) 129, 634
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 129, 634
FaeI CATG 2 cut(s) 662, 930
FaiI YATR 2 cut(s) 660, 928
FaqI GGGAC 4 cut(s) 121, 134, 298, 676
FatI CATG 2 cut(s) 658, 926
FauI CCCGC 1 cut(s) 575
FblI GTMKAC 2 cut(s) 141, 392
Fnu4HI GCNGC 8 cut(s) 36, 205, 214, 217, 279, 282, 366, 539
FokI GGATG 3 cut(s) 230, 245, 485
Fsp4HI GCNGC 8 cut(s) 36, 205, 214, 217, 279, 282, 366, 539
GlaI GCGC 6 cut(s) 48, 517, 601, 627, 669, 881
GluI GCNGC 8 cut(s) 36, 205, 214, 217, 279, 282, 366, 539
HaeII RGCGCY 4 cut(s) 50, 519, 671, 883
HaeIII GGCC 3 cut(s) 5, 93, 479
HapII CCGG 8 cut(s) 20, 32, 104, 158, 232, 404, 524, 819
HgaI GACGC 4 cut(s) 136, 208, 357, 767
HhaI GCGC 6 cut(s) 49, 518, 602, 628, 670, 882
Hin1I GRCGYC 2 cut(s) 47, 759
Hin1II CATG 2 cut(s) 662, 930
Hin6I GCGC 6 cut(s) 47, 516, 600, 626, 668, 880
HinP1I GCGC 6 cut(s) 47, 516, 600, 626, 668, 880
HincII GTYRAC 2 cut(s) 393, 724
HindII GTYRAC 2 cut(s) 393, 724
HinfI GANTC 6 cut(s) 12, 26, 311, 678, 794, 822
HpaII CCGG 8 cut(s) 20, 32, 104, 158, 232, 404, 524, 819
HphI GGTGA 3 cut(s) 352, 418, 804
Hpy166II GTNNAC 5 cut(s) 16, 142, 393, 705, 724
Hpy188I TCNGA 3 cut(s) 665, 843, 895
Hpy188III TCNNGA 2 cut(s) 121, 451
Hpy8I GTNNAC 5 cut(s) 16, 142, 393, 705, 724
Hpy99I CGWCG 9 cut(s) 373, 376, 379, 382, 391, 394, 416, 888, 905
HpyAV CCTTC 2 cut(s) 798, 848
HpyCH4III ACNGT 6 cut(s) 421, 568, 715, 728, 739, 859
HpyCH4IV ACGT 6 cut(s) 114, 414, 483, 549, 701, 789
HpyCH4V TGCA 4 cut(s) 55, 607, 658, 783
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 210, 213, 278, 524, 928
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 6 cut(s) 114, 414, 483, 549, 701, 789
Hsp92I GRCGYC 2 cut(s) 47, 759
Hsp92II CATG 2 cut(s) 662, 930
HspAI GCGC 6 cut(s) 47, 516, 600, 626, 668, 880
KasI GGCGCC 1 cut(s) 46
KflI GGGWCCC 1 cut(s) 690
KroI GCCGGC 2 cut(s) 31, 523
KroNI GCCGGC 2 cut(s) 33, 525
Kzo9I GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
LmnI GCTCC 1 cut(s) 579
Lsp1109I GCAGC 2 cut(s) 22, 200
LweI GCATC 1 cut(s) 252
MaeII ACGT 6 cut(s) 114, 414, 483, 549, 701, 789
MaeIII GTNAC 3 cut(s) 415, 509, 550
MalI GATC 8 cut(s) 125, 236, 410, 455, 587, 811, 845, 876
MbiI CCGCTC 1 cut(s) 582
MboI GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
MboII GAAGA 3 cut(s) 280, 556, 884
MflI RGATCY 3 cut(s) 123, 234, 453
MhlI GDGCHC 1 cut(s) 870
Mly113I GGCGCC 1 cut(s) 47
MlyI GAGTC 3 cut(s) 21, 320, 816
MmeI TCCRAC 3 cut(s) 87, 540, 918
MroNI GCCGGC 2 cut(s) 31, 523
MseI TTAA 3 cut(s) 696, 717, 734
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 8 cut(s) 20, 32, 104, 158, 232, 404, 524, 819
MspR9I CCNGG 3 cut(s) 20, 21, 105
Mva1269I GAATGC 1 cut(s) 341
MvnI CGCG 4 cut(s) 147, 219, 368, 602
MwoI GCNNNNNNNGC 6 cut(s) 44, 210, 213, 278, 524, 928
NaeI GCCGGC 2 cut(s) 33, 525
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 3 cut(s) 20, 21, 105
NdeII GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
NgoMIV GCCGGC 2 cut(s) 31, 523
NlaIII CATG 2 cut(s) 662, 930
NlaIV GGNNCC 5 cut(s) 48, 109, 236, 691, 692
NmeAIII GCCGAG 2 cut(s) 219, 455
NmuCI GTSAC 3 cut(s) 415, 509, 550
NspI RCATGY 1 cut(s) 662
PcsI WCGNNNNNNNCGW 7 cut(s) 63, 282, 306, 377, 383, 386, 417
PctI GAATGC 1 cut(s) 341
PdiI GCCGGC 2 cut(s) 33, 525
PfeI GAWTC 3 cut(s) 26, 678, 794
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 8 cut(s) 37, 206, 215, 218, 280, 283, 367, 540
PleI GAGTC 3 cut(s) 20, 319, 816
PluTI GGCGCC 1 cut(s) 50
PpsI GAGTC 3 cut(s) 20, 319, 816
Ppu21I YACGTR 2 cut(s) 115, 790
PpuMI RGGWCCY 2 cut(s) 108, 690
Psp5II RGGWCCY 2 cut(s) 108, 690
PspN4I GGNNCC 5 cut(s) 48, 109, 236, 691, 692
PspPI GGNCC 4 cut(s) 108, 118, 133, 690
PspPPI RGGWCCY 2 cut(s) 108, 690
PsuI RGATCY 3 cut(s) 123, 234, 453
PsyI GACNNNGTC 1 cut(s) 137
SalI GTCGAC 1 cut(s) 391
SaqAI TTAA 3 cut(s) 696, 717, 734
SatI GCNGC 8 cut(s) 36, 205, 214, 217, 279, 282, 366, 539
Sau3AI GATC 8 cut(s) 123, 234, 408, 453, 585, 809, 843, 874
Sau96I GGNCC 4 cut(s) 108, 118, 133, 690
SchI GAGTC 3 cut(s) 21, 320, 816
ScrFI CCNGG 3 cut(s) 20, 21, 105
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 1 cut(s) 252
SfoI GGCGCC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 403
SinI GGWCC 4 cut(s) 108, 118, 133, 690
SmaI CCCGGG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SspDI GGCGCC 1 cut(s) 46
StyD4I CCNGG 3 cut(s) 18, 19, 103
StyI CCWWGG 2 cut(s) 129, 634
TaaI ACNGT 6 cut(s) 421, 568, 715, 728, 739, 859
TaiI ACGT 6 cut(s) 117, 417, 486, 552, 704, 792
TaqI TCGA 3 cut(s) 392, 411, 681
TauI GCSGC 6 cut(s) 207, 219, 281, 284, 368, 541
TfiI GAWTC 3 cut(s) 26, 678, 794
Tru1I TTAA 3 cut(s) 696, 717, 734
Tru9I TTAA 3 cut(s) 696, 717, 734
TscAI CASTG 2 cut(s) 499, 868
TseFI GTSAC 3 cut(s) 415, 509, 550
TseI GCWGC 2 cut(s) 35, 213
Tsp45I GTSAC 3 cut(s) 415, 509, 550
TspDTI ATGAA 1 cut(s) 915
TspGWI ACGGA 2 cut(s) 316, 569
TspMI CCCGGG 1 cut(s) 19
TspRI CASTG 2 cut(s) 499, 868
Tth111I GACNNNGTC 1 cut(s) 137
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 4 cut(s) 108, 118, 133, 690
XceI RCATGY 1 cut(s) 662
XmaI CCCGGG 1 cut(s) 19
XmiI GTMKAC 2 cut(s) 141, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.