FvH4_3g27690

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013178
Physical Location & Seq
Forward (+)
20744089 .. 20745993
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27690.t1

Sequence Viewer

Length: 771 bp
ATGGATCCTGAAGGAGCAAAACCCTTGATTCTTCATTTGGGTTTCCATCGATTCAGGATAAGCAAATGGCCGAGCCTGGCCGAACCCAGCAGCCTCAGCCGGGGACCTACGTCGTCCAAATCCCCAAGGACCAAGTTTACCGCGTCCCACCCCCGGAGAACGCCACCCTTTACAACAAGTACACTTCCCAAAAGCCTCGCCCCCGCAACTGCTCCTGGCTCCTTTTCATCGTCGCCTCTCTCCTCCTCCTCCTCCTCCTCTTCCGCCGCCCTCTTCTACCTCCTCGTCCGCCCCGAGTCCCCCAACTACTCCGTCCAAACCATCTCATTCAAGGGCTTCAACCTCACCGCCCCCGCGTCCTCTCAGCAGGTCAACGTGGCCGTGCGTGCCGAGAACCCCAACAGGAAAATCGGGATATACTACAAGCAGCCACACAGCTCCGCCAACGTCTTCTATGCTGACATCAAGCTCTGTCACGGCGCCCTGCCCGCCTTTTATCAGCCGCCCAAGAGCGTCACGGAGTTGGATGCGGCGCTGACCGGGACGGGGATCAGGCTGACCAACGCGGCGCGTGACGGGTTAGTGGAGGCGCAGAGGCAAGGCAAGGTGGCGTTGAAGTTGCATGTCCGAAGCCCCGTTGCACTCAAACTGGGCTCCATTAAGACGTGGACGATTACCGTTAAACTTGCCTGTGATTTAACGGTGGATCAGCTGGCCCCAGACGCCAACATTGTGTCCAAACACTGCAACTATGGTGTACATCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

257

Amino Acids

27.61

Weight (kDa)

10.05

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 128 - 231 2.6e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccB1I GGYRCC 1 cut(s) 479
AccII CGCG 4 cut(s) 143, 356, 566, 571
AclWI GGATC 3 cut(s) 12, 557, 714
AcoI YGGCCR 3 cut(s) 68, 78, 378
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 2 cut(s) 480, 723
AfaI GTAC 2 cut(s) 181, 759
AfiI CCNNNNNNNGG 3 cut(s) 100, 153, 546
AgsI TTSAA 3 cut(s) 331, 340, 616
AjiI CACGTC 1 cut(s) 666
AjnI CCWGG 2 cut(s) 75, 214
AluBI AGCT 3 cut(s) 438, 469, 712
AluI AGCT 3 cut(s) 438, 469, 712
AlwI GGATC 3 cut(s) 12, 557, 714
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 4 cut(s) 68, 78, 378, 714
ApeKI GCWGC 2 cut(s) 90, 427
AspLEI GCGC 4 cut(s) 482, 535, 571, 592
AspS9I GGNCC 3 cut(s) 104, 129, 715
AsuC2I CCSGG 3 cut(s) 101, 154, 541
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 2 cut(s) 104, 129
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 442
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 102, 439
BccI CCATC 2 cut(s) 54, 329
BceAI ACGGC 2 cut(s) 365, 493
BciT130I CCWGG 2 cut(s) 77, 216
BcnI CCSGG 3 cut(s) 101, 154, 541
BfoI RGCGCY 2 cut(s) 483, 536
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 6 cut(s) 91, 267, 428, 503, 531, 567
BlsI GCNGC 6 cut(s) 92, 268, 429, 504, 532, 568
Bme1390I CCNGG 5 cut(s) 77, 101, 154, 216, 541
Bme18I GGWCC 2 cut(s) 104, 129
BmeT110I CYCGRG 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 666
BmgT120I GGNCC 3 cut(s) 104, 129, 715
BmiI GGNNCC 6 cut(s) 6, 105, 220, 481, 655, 717
BmrFI CCNGG 5 cut(s) 77, 101, 154, 216, 541
BmrI ACTGGG 1 cut(s) 659
BmsI GCATC 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 659
BoxI GACNNNNGTC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 95
BpuMI CCSGG 3 cut(s) 101, 154, 541
Bsa29I ATCGAT 1 cut(s) 49
BsaHI GRCGYC 2 cut(s) 480, 723
BsaJI CCNNGG 3 cut(s) 100, 125, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 153, 546
Bse1I ACTGG 1 cut(s) 654
BseBI CCWGG 2 cut(s) 77, 216
BseCI ATCGAT 1 cut(s) 49
BseDI CCNNGG 3 cut(s) 100, 125, 152
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 3 cut(s) 100, 153, 546
BseMII CTCAG 2 cut(s) 109, 377
BseNI ACTGG 1 cut(s) 654
BseRI GAGGAG 7 cut(s) 232, 235, 238, 241, 244, 247, 272
BseXI GCAGC 2 cut(s) 102, 439
BseYI CCCAGC 1 cut(s) 86
Bsh1236I CGCG 4 cut(s) 143, 356, 566, 571
BshFI GGCC 4 cut(s) 70, 80, 380, 716
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 100, 154, 540
BslFI GGGAC 4 cut(s) 117, 130, 283, 556
BslI CCNNNNNNNGG 3 cut(s) 100, 153, 546
BsmFI GGGAC 4 cut(s) 117, 130, 283, 556
BsnI GGCC 4 cut(s) 70, 80, 380, 716
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 3 cut(s) 4, 549, 706
BspANI GGCC 4 cut(s) 70, 80, 380, 716
BspCNI CTCAG 2 cut(s) 108, 376
BspDI ATCGAT 1 cut(s) 49
BspFNI CGCG 4 cut(s) 143, 356, 566, 571
BspLI GGNNCC 6 cut(s) 6, 105, 220, 481, 655, 717
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 3 cut(s) 12, 557, 714
BspT107I GGYRCC 1 cut(s) 479
BsrGI TGTACA 1 cut(s) 757
BsrI ACTGG 1 cut(s) 654
BssECI CCNNGG 3 cut(s) 100, 125, 152
BssMI GATC 3 cut(s) 4, 549, 706
BssNI GRCGYC 2 cut(s) 480, 723
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 2 cut(s) 77, 216
Bst4CI ACNGT 2 cut(s) 679, 703
Bst6I CTCTTC 2 cut(s) 265, 278
BstACI GRCGYC 2 cut(s) 480, 723
BstAUI TGTACA 1 cut(s) 757
BstC8I GCNNGC 3 cut(s) 387, 489, 714
BstDEI CTNAG 2 cut(s) 95, 363
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 4 cut(s) 143, 356, 566, 571
BstH2I RGCGCY 2 cut(s) 483, 536
BstHHI GCGC 4 cut(s) 482, 535, 571, 592
BstKTI GATC 3 cut(s) 7, 552, 709
BstMBI GATC 3 cut(s) 4, 549, 706
BstMWI GCNNNNNNNGC 4 cut(s) 96, 386, 488, 722
BstNI CCWGG 2 cut(s) 77, 216
BstNSI RCATGY 1 cut(s) 626
BstPAI GACNNNNGTC 1 cut(s) 109
BstSCI CCNGG 5 cut(s) 75, 99, 152, 214, 539
BstUI CGCG 4 cut(s) 143, 356, 566, 571
BstV1I GCAGC 2 cut(s) 102, 439
BstV2I GAAGAC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 49
BsuRI GGCC 4 cut(s) 70, 80, 380, 716
BsuTUI ATCGAT 1 cut(s) 49
BtrI CACGTC 1 cut(s) 666
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 742
BtsIMutI CAGTG 1 cut(s) 742
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 387, 489, 714
CfoI GCGC 4 cut(s) 482, 535, 571, 592
Cfr13I GGNCC 3 cut(s) 104, 129, 715
ClaI ATCGAT 1 cut(s) 49
CseI GACGC 4 cut(s) 132, 345, 502, 731
Csp6I GTAC 2 cut(s) 180, 758
CviAII CATG 1 cut(s) 623
CviQI GTAC 2 cut(s) 180, 758
DdeI CTNAG 2 cut(s) 95, 363
DinI GGCGCC 1 cut(s) 481
DpnI GATC 3 cut(s) 6, 551, 708
DpnII GATC 3 cut(s) 4, 549, 706
EaeI YGGCCR 3 cut(s) 68, 78, 378
Eam1104I CTCTTC 2 cut(s) 265, 278
EarI CTCTTC 2 cut(s) 265, 278
EciI GGCGGA 3 cut(s) 253, 278, 430
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 656
Eco47I GGWCC 2 cut(s) 104, 129
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 75, 214
EcoT14I CCWWGG 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 656
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 1 cut(s) 626
FaiI YATR 4 cut(s) 418, 456, 624, 753
FaqI GGGAC 4 cut(s) 117, 130, 283, 556
FatI CATG 1 cut(s) 622
FauI CCCGC 3 cut(s) 211, 361, 496
Fnu4HI GCNGC 6 cut(s) 91, 267, 428, 503, 531, 567
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 6 cut(s) 91, 267, 428, 503, 531, 567
GlaI GCGC 4 cut(s) 481, 534, 570, 591
GluI GCNGC 6 cut(s) 91, 267, 428, 503, 531, 567
GsaI CCCAGC 1 cut(s) 90
HaeII RGCGCY 2 cut(s) 483, 536
HaeIII GGCC 4 cut(s) 70, 80, 380, 716
HapII CCGG 3 cut(s) 100, 154, 540
HgaI GACGC 4 cut(s) 132, 345, 502, 731
HhaI GCGC 4 cut(s) 482, 535, 571, 592
Hin1I GRCGYC 2 cut(s) 480, 723
Hin1II CATG 1 cut(s) 626
Hin6I GCGC 4 cut(s) 480, 533, 569, 590
HinP1I GCGC 4 cut(s) 480, 533, 569, 590
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 3 cut(s) 28, 51, 296
HpaII CCGG 3 cut(s) 100, 154, 540
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 5 cut(s) 138, 182, 373, 669, 758
Hpy188I TCNGA 1 cut(s) 629
Hpy188III TCNNGA 3 cut(s) 8, 55, 412
Hpy8I GTNNAC 5 cut(s) 138, 182, 373, 669, 758
Hpy99I CGWCG 2 cut(s) 115, 235
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 2 cut(s) 679, 703
HpyCH4IV ACGT 4 cut(s) 110, 375, 447, 665
HpyCH4V TGCA 3 cut(s) 622, 641, 747
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 386, 488, 722
HpyF3I CTNAG 2 cut(s) 95, 363
HpySE526I ACGT 4 cut(s) 110, 375, 447, 665
Hsp92I GRCGYC 2 cut(s) 480, 723
Hsp92II CATG 1 cut(s) 626
HspAI GCGC 4 cut(s) 480, 533, 569, 590
KasI GGCGCC 1 cut(s) 479
Kzo9I GATC 3 cut(s) 4, 549, 706
LmnI GCTCC 5 cut(s) 14, 217, 224, 443, 659
Lsp1109I GCAGC 2 cut(s) 102, 439
LweI GCATC 1 cut(s) 517
MaeII ACGT 4 cut(s) 110, 375, 447, 665
MaeIII GTNAC 3 cut(s) 473, 514, 572
MalI GATC 3 cut(s) 6, 551, 708
MboI GATC 3 cut(s) 4, 549, 706
MboII GAAGA 4 cut(s) 23, 252, 265, 442
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 656
Mly113I GGCGCC 1 cut(s) 480
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 504
MseI TTAA 3 cut(s) 660, 681, 698
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 3 cut(s) 100, 154, 540
MspR9I CCNGG 5 cut(s) 77, 101, 154, 216, 541
MvaI CCWGG 2 cut(s) 77, 216
MvnI CGCG 4 cut(s) 143, 356, 566, 571
MwoI GCNNNNNNNGC 4 cut(s) 96, 386, 488, 722
NarI GGCGCC 1 cut(s) 480
NciI CCSGG 3 cut(s) 101, 154, 541
NdeII GATC 3 cut(s) 4, 549, 706
NlaIII CATG 1 cut(s) 626
NlaIV GGNNCC 6 cut(s) 6, 105, 220, 481, 655, 717
NmeAIII GCCGAG 2 cut(s) 96, 415
NmuCI GTSAC 3 cut(s) 473, 514, 572
NspI RCATGY 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PfeI GAWTC 2 cut(s) 28, 51
PkrI GCNGC 6 cut(s) 92, 268, 429, 504, 532, 568
PleI GAGTC 1 cut(s) 304
PluTI GGCGCC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 104
PshAI GACNNNNGTC 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 75, 214
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 2 cut(s) 75, 214
PspN4I GGNNCC 6 cut(s) 6, 105, 220, 481, 655, 717
PspPI GGNCC 3 cut(s) 104, 129, 715
PspPPI RGGWCCY 1 cut(s) 104
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 2 cut(s) 181, 759
RsaNI GTAC 2 cut(s) 180, 758
SaqAI TTAA 3 cut(s) 660, 681, 698
SatI GCNGC 6 cut(s) 91, 267, 428, 503, 531, 567
Sau3AI GATC 3 cut(s) 4, 549, 706
Sau96I GGNCC 3 cut(s) 104, 129, 715
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 5 cut(s) 77, 101, 154, 216, 541
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 1 cut(s) 517
SfoI GGCGCC 1 cut(s) 481
SinI GGWCC 2 cut(s) 104, 129
SspDI GGCGCC 1 cut(s) 479
StyD4I CCNGG 5 cut(s) 75, 99, 152, 214, 539
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 679, 703
TaiI ACGT 4 cut(s) 113, 378, 450, 668
TaqI TCGA 1 cut(s) 49
TatI WGTACW 2 cut(s) 179, 757
TauI GCSGC 4 cut(s) 269, 505, 533, 569
TfiI GAWTC 2 cut(s) 28, 51
Tru1I TTAA 3 cut(s) 660, 681, 698
Tru9I TTAA 3 cut(s) 660, 681, 698
TscAI CASTG 1 cut(s) 749
TseFI GTSAC 3 cut(s) 473, 514, 572
TseI GCWGC 2 cut(s) 90, 427
Tsp45I GTSAC 3 cut(s) 473, 514, 572
TspDTI ATGAA 2 cut(s) 23, 216
TspGWI ACGGA 2 cut(s) 301, 533
TspRI CASTG 1 cut(s) 749
VpaK11BI GGWCC 2 cut(s) 104, 129
XceI RCATGY 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.