MD00G1106600.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0013178
Physical Location & Seq
Reverse (-)
22381205 .. 22382029
825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1106600.v1.1.491

Sequence Viewer

Length: 825 bp
ATGGCCGACCGAGTCCACCCCCGCGACCCGCCCCTACACAACGAGACGGCGCCGTTTCCTTACACCGCCTCACCGGAATCCCCCCGAAAGCCCTCCCCTCCGGAGTCCGAGAAGCCAGTCCCTCCGCCGGGCACCTACGTCATCCAGATCCCCAAGGACCAAGTCTACCGCGTCCCGCCGCCAGAGAACGCAACCCGCTACAAGAATTACACTCGCCAGAACCCTCGCCGAAGTTCCTGCCGCTGCTGCTTCTGCTGGCTCTTCGGCCTCGTTGCTGCCCTCATCTTCCTCTCCGCCGCCGCCGCCGGCATCTTCTACCTCGTGGTCCGCCCCAAATCCCCCAACTACTCAATCGATAGCATCGCGTTCAGAGGATTCAACTTGACGGCGCCGTCCCCGTCCCCGTCCTACGCCATCTCTCCGGAGATCCAGGTCACCGTTCGAGCCCAAAACCCTAACAAAAAGATCGGGATCTACTACGGAAAAAAGAGCTCCGTCAAACTCTTCTACTCCGACGTCAAATTGTGCGACGGAGCTCTGCCGGCGTTTTACCAGCCGTTAAAGAATGTAACGGTGTTCCAGACGGCGTTAAAGGGGTCGGGGATCGAGCTGACGAGCGCGGCGCAGCAGGGGTTAGTGGATGCGCAGAAGCAGGGGAAGGTGCCGTTGGGATTGGACATAAGAATGCCCGTTAGAATTAAAGTGGGGCCCATAAAGACGTGGACGATTAATGTCAAGGTTGGGTGTGATCTAACGGTGGATAAGCTGACGACGGAGGCCAAGATTGTGTCAAAGGACTGTGATTACAGTGTGGATCCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

275

Amino Acids

30.26

Weight (kDa)

9.47

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 146 - 249 4.3e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AatII GACGTC 1 cut(s) 519
Acc16I TGCGCA 1 cut(s) 645
AccB1I GGYRCC 4 cut(s) 49, 131, 388, 661
AccI GTMKAC 1 cut(s) 165
AccII CGCG 4 cut(s) 24, 171, 365, 620
AccIII TCCGGA 2 cut(s) 100, 421
AclWI GGATC 6 cut(s) 142, 421, 479, 611, 809, 822
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 3 cut(s) 50, 389, 516
AfiI CCNNNNNNNGG 2 cut(s) 127, 128
AgsI TTSAA 1 cut(s) 379
AjiI CACGTC 1 cut(s) 720
AjnI CCWGG 1 cut(s) 429
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AluBI AGCT 4 cut(s) 492, 536, 610, 766
AluI AGCT 4 cut(s) 492, 536, 610, 766
Alw21I GWGCWC 2 cut(s) 494, 538
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 6 cut(s) 142, 421, 479, 611, 809, 822
Aor13HI TCCGGA 2 cut(s) 100, 421
AoxI GGCC 4 cut(s) 3, 265, 707, 777
ApaI GGGCCC 1 cut(s) 711
ApeKI GCWGC 4 cut(s) 243, 246, 275, 625
AseI ATTAAT 1 cut(s) 729
AspLEI GCGC 5 cut(s) 52, 391, 620, 625, 646
AspS9I GGNCC 4 cut(s) 157, 325, 707, 708
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 63, 427
AvaII GGWCC 2 cut(s) 157, 325
BaeGI GKGCMC 2 cut(s) 134, 711
BamHI GGATCC 1 cut(s) 814
BanI GGYRCC 4 cut(s) 49, 131, 388, 661
BanII GRGCYC 4 cut(s) 448, 494, 538, 711
BauI CACGAG 1 cut(s) 320
Bbv12I GWGCWC 2 cut(s) 494, 538
BbvI GCAGC 4 cut(s) 230, 233, 262, 637
BccI CCATC 1 cut(s) 422
BceAI ACGGC 7 cut(s) 37, 63, 376, 402, 541, 600, 649
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 431
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 38
BfoI RGCGCY 2 cut(s) 53, 392
Bme1390I CCNGG 2 cut(s) 129, 431
Bme18I GGWCC 2 cut(s) 157, 325
BmgBI CACGTC 1 cut(s) 720
BmgT120I GGNCC 4 cut(s) 157, 325, 707, 708
BmiI GGNNCC 7 cut(s) 51, 133, 390, 663, 708, 709, 816
BmrFI CCNGG 2 cut(s) 129, 431
BmsI GCATC 3 cut(s) 318, 369, 631
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 470
BsaHI GRCGYC 3 cut(s) 50, 389, 516
BsaJI CCNNGG 2 cut(s) 153, 818
BsaWI WCCGGW 3 cut(s) 73, 100, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 128
Bse118I RCCGGY 2 cut(s) 305, 541
Bse1I ACTGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 470
BseAI TCCGGA 2 cut(s) 100, 421
BseBI CCWGG 1 cut(s) 431
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 153, 818
BseGI GGATG 2 cut(s) 141, 646
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 127, 128
BseNI ACTGG 1 cut(s) 116
BseSI GKGCMC 2 cut(s) 134, 711
BseXI GCAGC 4 cut(s) 230, 233, 262, 637
Bsh1236I CGCG 4 cut(s) 24, 171, 365, 620
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 4 cut(s) 5, 267, 709, 779
BshNI GGYRCC 4 cut(s) 49, 131, 388, 661
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 494, 538
BsiSI CCGG 6 cut(s) 74, 101, 128, 306, 422, 542
BslFI GGGAC 4 cut(s) 104, 158, 379, 385
BslI CCNNNNNNNGG 2 cut(s) 127, 128
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 4 cut(s) 104, 158, 379, 385
BsmI GAATGC 1 cut(s) 690
BsnI GGCC 4 cut(s) 5, 267, 709, 779
Bsp120I GGGCCC 1 cut(s) 707
Bsp1286I GDGCHC 5 cut(s) 134, 448, 494, 538, 711
Bsp13I TCCGGA 2 cut(s) 100, 421
Bsp143I GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
Bsp19I CCATGG 1 cut(s) 818
BspANI GGCC 4 cut(s) 5, 267, 709, 779
BspDI ATCGAT 1 cut(s) 354
BspEI TCCGGA 2 cut(s) 100, 421
BspFNI CGCG 4 cut(s) 24, 171, 365, 620
BspLI GGNNCC 7 cut(s) 51, 133, 390, 663, 708, 709, 816
BspPI GGATC 6 cut(s) 142, 421, 479, 611, 809, 822
BspQI GCTCTTC 1 cut(s) 266
BspT107I GGYRCC 4 cut(s) 49, 131, 388, 661
BsrFI RCCGGY 2 cut(s) 305, 541
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 2 cut(s) 305, 541
BssECI CCNNGG 2 cut(s) 153, 818
BssMI GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
BssNI GRCGYC 3 cut(s) 50, 389, 516
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 153, 818
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 5 cut(s) 439, 574, 757, 800, 809
Bst6I CTCTTC 2 cut(s) 266, 509
BstACI GRCGYC 3 cut(s) 50, 389, 516
BstC8I GCNNGC 3 cut(s) 257, 307, 543
BstDSI CCRYGG 1 cut(s) 818
BstEII GGTNACC 1 cut(s) 433
BstF5I GGATG 2 cut(s) 141, 646
BstFNI CGCG 4 cut(s) 24, 171, 365, 620
BstH2I RGCGCY 2 cut(s) 53, 392
BstHHI GCGC 5 cut(s) 52, 391, 620, 625, 646
BstKTI GATC 7 cut(s) 150, 429, 468, 474, 606, 751, 817
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 542
BstNI CCWGG 1 cut(s) 431
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 127, 429
BstSLI GKGCMC 2 cut(s) 134, 711
BstUI CGCG 4 cut(s) 24, 171, 365, 620
BstV1I GCAGC 4 cut(s) 230, 233, 262, 637
BstX2I RGATCY 4 cut(s) 147, 426, 471, 814
BstYI RGATCY 4 cut(s) 147, 426, 471, 814
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 4 cut(s) 5, 267, 709, 779
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 818
BtgZI GCGATG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 720
BtsCI GGATG 2 cut(s) 141, 646
BtsIMutI CAGTG 1 cut(s) 814
Cac8I GCNNGC 3 cut(s) 257, 307, 543
CfoI GCGC 5 cut(s) 52, 391, 620, 625, 646
Cfr10I RCCGGY 2 cut(s) 305, 541
Cfr13I GGNCC 4 cut(s) 157, 325, 707, 708
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 1 cut(s) 160
CviAII CATG 1 cut(s) 819
DinI GGCGCC 2 cut(s) 51, 390
DpnI GATC 7 cut(s) 149, 428, 467, 473, 605, 750, 816
DpnII GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 266, 509
EarI CTCTTC 2 cut(s) 266, 509
EciI GGCGGA 3 cut(s) 114, 283, 317
Ecl136II GAGCTC 2 cut(s) 492, 536
Eco130I CCWWGG 2 cut(s) 153, 818
Eco24I GRGCYC 4 cut(s) 448, 494, 538, 711
Eco47I GGWCC 2 cut(s) 157, 325
Eco53kI GAGCTC 2 cut(s) 492, 536
Eco91I GGTNACC 1 cut(s) 433
EcoICRI GAGCTC 2 cut(s) 492, 536
EcoO109I RGGNCCY 1 cut(s) 707
EcoO65I GGTNACC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 2 cut(s) 153, 818
EcoT38I GRGCYC 4 cut(s) 448, 494, 538, 711
EgeI GGCGCC 2 cut(s) 51, 390
EheI GGCGCC 2 cut(s) 51, 390
ErhI CCWWGG 2 cut(s) 153, 818
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 1 cut(s) 822
FaiI YATR 3 cut(s) 680, 713, 820
FaqI GGGAC 4 cut(s) 104, 158, 379, 385
FatI CATG 1 cut(s) 818
FauI CCCGC 4 cut(s) 29, 36, 183, 203
FblI GTMKAC 1 cut(s) 165
FokI GGATG 2 cut(s) 128, 653
FriOI GRGCYC 4 cut(s) 448, 494, 538, 711
FspI TGCGCA 1 cut(s) 645
GlaI GCGC 5 cut(s) 51, 390, 619, 624, 645
HaeII RGCGCY 2 cut(s) 53, 392
HaeIII GGCC 4 cut(s) 5, 267, 709, 779
HapII CCGG 6 cut(s) 74, 101, 128, 306, 422, 542
HgaI GACGC 1 cut(s) 160
HhaI GCGC 5 cut(s) 52, 391, 620, 625, 646
Hin1I GRCGYC 3 cut(s) 50, 389, 516
Hin1II CATG 1 cut(s) 822
Hin6I GCGC 5 cut(s) 50, 389, 618, 623, 644
HinP1I GCGC 5 cut(s) 50, 389, 618, 623, 644
HinfI GANTC 4 cut(s) 12, 77, 104, 375
HpaII CCGG 6 cut(s) 74, 101, 128, 306, 422, 542
HphI GGTGA 2 cut(s) 63, 427
Hpy166II GTNNAC 3 cut(s) 16, 166, 723
Hpy188I TCNGA 3 cut(s) 109, 371, 514
Hpy188III TCNNGA 5 cut(s) 101, 145, 422, 469, 580
Hpy8I GTNNAC 3 cut(s) 16, 166, 723
Hpy99I CGWCG 3 cut(s) 518, 533, 775
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 5 cut(s) 439, 574, 757, 800, 809
HpyCH4IV ACGT 3 cut(s) 138, 516, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 542
HpySE526I ACGT 3 cut(s) 138, 516, 719
Hsp92I GRCGYC 3 cut(s) 50, 389, 516
Hsp92II CATG 1 cut(s) 822
HspAI GCGC 5 cut(s) 50, 389, 618, 623, 644
KasI GGCGCC 2 cut(s) 49, 388
Kpn2I TCCGGA 2 cut(s) 100, 421
KroI GCCGGC 2 cut(s) 305, 541
KroNI GCCGGC 2 cut(s) 307, 543
Kzo9I GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 2 cut(s) 497, 533
Lsp1109I GCAGC 4 cut(s) 230, 233, 262, 637
LweI GCATC 3 cut(s) 318, 369, 631
MaeII ACGT 3 cut(s) 138, 516, 719
MaeIII GTNAC 2 cut(s) 433, 568
MalI GATC 7 cut(s) 149, 428, 467, 473, 605, 750, 816
MboI GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
MboII GAAGA 4 cut(s) 253, 277, 304, 496
MflI RGATCY 4 cut(s) 147, 426, 471, 814
MhlI GDGCHC 5 cut(s) 134, 448, 494, 538, 711
MluCI AATT 3 cut(s) 205, 521, 696
Mly113I GGCGCC 2 cut(s) 50, 389
MlyI GAGTC 2 cut(s) 21, 113
MmeI TCCRAC 1 cut(s) 537
MroI TCCGGA 2 cut(s) 100, 421
MroNI GCCGGC 2 cut(s) 305, 541
MseI TTAA 4 cut(s) 560, 590, 699, 729
MslI CAYNNNNRTG 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 6 cut(s) 74, 101, 128, 306, 422, 542
MspR9I CCNGG 2 cut(s) 129, 431
MteI GCGCNGCGC 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 690
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 4 cut(s) 24, 171, 365, 620
MwoI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 542
NaeI GCCGGC 2 cut(s) 307, 543
NarI GGCGCC 2 cut(s) 50, 389
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 1 cut(s) 818
NdeII GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
NgoMIV GCCGGC 2 cut(s) 305, 541
NlaIII CATG 1 cut(s) 822
NlaIV GGNNCC 7 cut(s) 51, 133, 390, 663, 708, 709, 816
NmuCI GTSAC 1 cut(s) 433
NsbI TGCGCA 1 cut(s) 645
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 690
PdiI GCCGGC 2 cut(s) 307, 543
PfeI GAWTC 2 cut(s) 77, 375
PflFI GACNNNGTC 2 cut(s) 11, 161
PleI GAGTC 2 cut(s) 20, 112
PluTI GGCGCC 2 cut(s) 53, 392
PpsI GAGTC 2 cut(s) 20, 112
PshBI ATTAAT 1 cut(s) 729
Psp124BI GAGCTC 2 cut(s) 494, 538
Psp6I CCWGG 1 cut(s) 429
PspEI GGTNACC 1 cut(s) 433
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 7 cut(s) 51, 133, 390, 663, 708, 709, 816
PspOMI GGGCCC 1 cut(s) 707
PspPI GGNCC 4 cut(s) 157, 325, 707, 708
PsuI RGATCY 4 cut(s) 147, 426, 471, 814
PsyI GACNNNGTC 2 cut(s) 11, 161
RseI CAYNNNNRTG 1 cut(s) 683
SacI GAGCTC 2 cut(s) 494, 538
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 4 cut(s) 560, 590, 699, 729
Sau3AI GATC 7 cut(s) 147, 426, 465, 471, 603, 748, 814
Sau96I GGNCC 4 cut(s) 157, 325, 707, 708
SchI GAGTC 2 cut(s) 21, 113
ScrFI CCNGG 2 cut(s) 129, 431
SduI GDGCHC 5 cut(s) 134, 448, 494, 538, 711
SfaNI GCATC 3 cut(s) 318, 369, 631
SfoI GGCGCC 2 cut(s) 51, 390
SinI GGWCC 2 cut(s) 157, 325
SmiMI CAYNNNNRTG 1 cut(s) 683
Sse9I AATT 3 cut(s) 205, 521, 696
SspDI GGCGCC 2 cut(s) 49, 388
SstI GAGCTC 2 cut(s) 494, 538
StyD4I CCNGG 2 cut(s) 127, 429
StyI CCWWGG 2 cut(s) 153, 818
TaaI ACNGT 5 cut(s) 439, 574, 757, 800, 809
TaiI ACGT 3 cut(s) 141, 519, 722
TaqI TCGA 3 cut(s) 354, 442, 606
TaqII GACCGA 1 cut(s) 24
TasI AATT 3 cut(s) 205, 521, 696
TauI GCSGC 6 cut(s) 181, 243, 299, 302, 305, 623
TfiI GAWTC 2 cut(s) 77, 375
Tru1I TTAA 4 cut(s) 560, 590, 699, 729
Tru9I TTAA 4 cut(s) 560, 590, 699, 729
TscAI CASTG 1 cut(s) 814
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 4 cut(s) 243, 246, 275, 625
Tsp45I GTSAC 1 cut(s) 433
TspGWI ACGGA 4 cut(s) 484, 495, 546, 788
TspRI CASTG 1 cut(s) 814
Tth111I GACNNNGTC 2 cut(s) 11, 161
VpaK11BI GGWCC 2 cut(s) 157, 325
VspI ATTAAT 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 165
ZraI GACGTC 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.