AT5G21130

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013178
Physical Location & Seq
Forward (+)
7185897 .. 7186919
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G21130.1

Sequence Viewer

Length: 846 bp
ATGACGGTCGAGAAACCACAAGAAATGACCGGCGATACAAACTCCGACGGATTCCTAACTAACAAAGACGTTCACAGAATAAAGCATCCATCGCTAGATACCAACGATAGTTCCTCCAGCCGATACTCCGTCGATTCTCAGAAATCAAGAATAGGACCACCGCCTGGGACTTACGTCATCAAACTCCCTAAGGATCAGATCTACCGTGTTCCTCCACCGGAAAATGCTCACCGTTACGAGTATCTCTCTCGCCGGAAAACAAACAAATCGTGTTGCCGGCGATGTTTATGCTATTCCCTCTCTGCTTTACTCATCATTATCGTCCTCGCAGCGATTGCCTTCGGATTCTTCTACCTCGTTTACCAGCCGCATAAGCCACAGTTCTCCGTGAGTGGAGTCTCCGTCACCGGAATCAACCTGACGTCATCTTCTCCGTTTTCTCCGGTGATCAGAATCAAGTTGCGATCTCAGAACGTTAAAGGTAAACTCGGTTTGATATACGAGAAAGGAAATGAGGCTGACGTGTTTTTTAACGGAACCAAACTTGGGAACGGCGAGTTCACGGCGTTTAAGCAGCCGGCGGGTAATGTAACGGTGATCGTGACGGTGTTAAAGGGATCGAGTGTTAAGTTAAAGAGCTCGTCGCGTAAAGAGTTAACGGAATCGCAGAAGAAAGGAAAAGTGCCGTTTGGTCTCAGAATTAAAGCGCCGGTTAAGTTTAAGGTTGGCTCCGTTACAACGTGGACGATGACCATTACGGTGGATTGCAAAATAACAGTGGATAAGTTAACGGCGTCAGCAACTGTGAAGACGGAAAATTGCGAAACGGGCTTGAGCCTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

281

Amino Acids

30.93

Weight (kDa)

9.77

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 154 - 256 4.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 164
AccII CGCG 1 cut(s) 646
AciI CCGC 3 cut(s) 161, 368, 581
AclI AACGTT 1 cut(s) 474
AclWI GGATC 2 cut(s) 201, 625
AcyI GRCGYC 2 cut(s) 422, 794
AfiI CCNNNNNNNGG 2 cut(s) 164, 546
AflIII ACRYGT 1 cut(s) 522
AjiI CACGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 1 cut(s) 639
AluI AGCT 1 cut(s) 639
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 403, 698
AlwI GGATC 2 cut(s) 201, 625
AlwNI CAGNNNCTG 1 cut(s) 803
ApeKI GCWGC 2 cut(s) 329, 574
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 4 cut(s) 221, 397, 457, 607
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 189
BanII GRGCYC 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 815
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 341, 586
BccI CCATC 1 cut(s) 97
BceAI ACGGC 4 cut(s) 568, 579, 670, 807
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 1 cut(s) 165
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 403, 698
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 710
BglII AGATCT 1 cut(s) 198
BisI GCNGC 3 cut(s) 330, 368, 575
BlsI GCNGC 3 cut(s) 331, 369, 576
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 538, 730
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 815
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 422, 794
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 3 cut(s) 217, 407, 442
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 546
Bse118I RCCGGY 4 cut(s) 29, 276, 577, 709
Bse21I CCTNAGG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 452
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 452
BseLI CCNNNNNNNGG 2 cut(s) 164, 546
BseMII CTCAG 3 cut(s) 152, 482, 709
BseXI GCAGC 2 cut(s) 341, 586
Bsh1236I CGCG 1 cut(s) 646
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 8 cut(s) 30, 218, 253, 277, 408, 443, 578, 710
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 164, 546
BsmAI GTCTC 2 cut(s) 403, 698
BsmFI GGGAC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 698
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 6 cut(s) 193, 198, 447, 464, 597, 617
BspACI CCGC 3 cut(s) 161, 368, 581
BspCNI CTCAG 3 cut(s) 151, 481, 708
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 538, 730
BspPI GGATC 2 cut(s) 201, 625
BspTNI GGTCTC 1 cut(s) 698
BsrFI RCCGGY 4 cut(s) 29, 276, 577, 709
BssAI RCCGGY 4 cut(s) 29, 276, 577, 709
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 6 cut(s) 193, 198, 447, 464, 597, 617
BssNI GRCGYC 2 cut(s) 422, 794
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 9 cut(s) 7, 206, 233, 381, 595, 607, 760, 778, 805
BstACI GRCGYC 2 cut(s) 422, 794
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 278, 579
BstDEI CTNAG 4 cut(s) 138, 189, 468, 695
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 646
BstH2I RGCGCY 1 cut(s) 710
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 6 cut(s) 196, 201, 450, 467, 600, 620
BstMAI GTCTC 2 cut(s) 403, 698
BstMBI GATC 6 cut(s) 193, 198, 447, 464, 597, 617
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 91, 335, 373, 828
BstNI CCWGG 1 cut(s) 165
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 163
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 341, 586
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 189
BtgZI GCGATG 2 cut(s) 75, 295
BtrI CACGTC 1 cut(s) 523
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 783
Cac8I GCNNGC 2 cut(s) 278, 579
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 4 cut(s) 29, 276, 577, 709
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 783
CviJI RGCY 9 cut(s) 120, 367, 376, 518, 577, 639, 729, 831, 837
CviKI_1 RGCY 9 cut(s) 120, 367, 376, 518, 577, 639, 729, 831, 837
DdeI CTNAG 4 cut(s) 138, 189, 468, 695
DpnI GATC 6 cut(s) 195, 200, 449, 466, 599, 619
DpnII GATC 6 cut(s) 193, 198, 447, 464, 597, 617
Ecl136II GAGCTC 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 641
Eco31I GGTCTC 1 cut(s) 698
Eco47I GGWCC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 639
Eco81I CCTNAGG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 641
FaiI YATR 3 cut(s) 289, 372, 499
FaqI GGGAC 1 cut(s) 181
FauI CCCGC 1 cut(s) 574
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 330, 368, 575
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 3 cut(s) 330, 368, 575
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 708
GluI GCNGC 3 cut(s) 330, 368, 575
GsuI CTGGAG 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 710
HapII CCGG 8 cut(s) 30, 218, 253, 277, 408, 443, 578, 710
HgaI GACGC 1 cut(s) 783
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 2 cut(s) 422, 794
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HincII GTYRAC 2 cut(s) 657, 789
HindII GTYRAC 2 cut(s) 657, 789
HinfI GANTC 7 cut(s) 51, 134, 345, 396, 411, 453, 662
HpaI GTTAAC 2 cut(s) 657, 789
HpaII CCGG 8 cut(s) 30, 218, 253, 277, 408, 443, 578, 710
HphI GGTGA 4 cut(s) 221, 397, 457, 607
Hpy166II GTNNAC 7 cut(s) 73, 361, 485, 561, 657, 744, 789
Hpy188I TCNGA 7 cut(s) 46, 141, 198, 344, 452, 471, 698
Hpy188III TCNNGA 3 cut(s) 10, 147, 601
Hpy8I GTNNAC 7 cut(s) 73, 361, 485, 561, 657, 744, 789
Hpy99I CGWCG 3 cut(s) 50, 134, 646
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 9 cut(s) 7, 206, 233, 381, 595, 607, 760, 778, 805
HpyCH4IV ACGT 6 cut(s) 69, 174, 422, 474, 522, 740
HpyCH4V TGCA 1 cut(s) 768
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 335, 373, 828
HpyF3I CTNAG 4 cut(s) 138, 189, 468, 695
HpySE526I ACGT 6 cut(s) 69, 174, 422, 474, 522, 740
Hsp92I GRCGYC 2 cut(s) 422, 794
HspAI GCGC 1 cut(s) 707
KroI GCCGGC 2 cut(s) 276, 577
KroNI GCCGGC 2 cut(s) 278, 579
Ksp22I TGATCA 1 cut(s) 447
KspAI GTTAAC 2 cut(s) 657, 789
Kzo9I GATC 6 cut(s) 193, 198, 447, 464, 597, 617
LmnI GCTCC 1 cut(s) 734
Lsp1109I GCAGC 2 cut(s) 341, 586
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 95
MaeII ACGT 6 cut(s) 69, 174, 422, 474, 522, 740
MaeIII GTNAC 5 cut(s) 233, 403, 589, 601, 733
MalI GATC 6 cut(s) 195, 200, 449, 466, 599, 619
MboI GATC 6 cut(s) 193, 198, 447, 464, 597, 617
MboII GAAGA 4 cut(s) 340, 420, 682, 820
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 641
MluCI AATT 2 cut(s) 699, 817
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 6 cut(s) 124, 222, 308, 335, 365, 508
MroNI GCCGGC 2 cut(s) 276, 577
MslI CAYNNNNRTG 1 cut(s) 758
MspI CCGG 8 cut(s) 30, 218, 253, 277, 408, 443, 578, 710
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 4 cut(s) 91, 335, 373, 828
NaeI GCCGGC 2 cut(s) 278, 579
NdeII GATC 6 cut(s) 193, 198, 447, 464, 597, 617
NgoMIV GCCGGC 2 cut(s) 276, 577
NlaIV GGNNCC 2 cut(s) 538, 730
NmuCI GTSAC 2 cut(s) 403, 601
PdiI GCCGGC 2 cut(s) 278, 579
PfeI GAWTC 6 cut(s) 51, 134, 345, 411, 453, 662
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 3 cut(s) 331, 369, 576
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PshAI GACNNNNGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 641
Psp1406I AACGTT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 538, 730
PspPI GGNCC 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 758
SacI GAGCTC 1 cut(s) 641
SatI GCNGC 3 cut(s) 330, 368, 575
Sau3AI GATC 6 cut(s) 193, 198, 447, 464, 597, 617
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 641
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 2 cut(s) 699, 817
SsiI CCGC 3 cut(s) 161, 368, 581
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 9 cut(s) 7, 206, 233, 381, 595, 607, 760, 778, 805
TaiI ACGT 6 cut(s) 72, 177, 425, 477, 525, 743
TaqI TCGA 3 cut(s) 9, 132, 620
TasI AATT 2 cut(s) 699, 817
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 6 cut(s) 51, 134, 345, 411, 453, 662
TscAI CASTG 1 cut(s) 783
TseFI GTSAC 2 cut(s) 403, 601
TseI GCWGC 2 cut(s) 329, 574
Tsp45I GTSAC 2 cut(s) 403, 601
TspGWI ACGGA 9 cut(s) 63, 118, 376, 391, 423, 549, 674, 721, 827
TspRI CASTG 1 cut(s) 783
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 95
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.