Rmu_co8414557.1_g000001

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8414557.1
OG0013178
Physical Location & Seq
Reverse (-)
960 .. 1364
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8414557.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
ccggtgatcgacgtgaccgtgcgtgcggataaccctaacaggaaaatcgggatctactacgagcgagacagctcggccaacgtgttctacactcacatccagttgtgtgacggcgctctgccggcgttttatcagccgccgaagaacgtgacggagttgaaaacggtgctgactgggagcgggatcaggctgacgagcgcggtgcaaaacgggctggtggtggcgcagagccaaggcaaggtggcgttacttctgcatgtccgagcccccgttagaatcaaagtggggtcctttaagacgtggacgattaccgttaaagttgactgtgatttaacggtggataagctgacctcggacgccaagattgtttctaaagactgcaactacggtgtggatccttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

134

Amino Acids

14.7

Weight (kDa)

9.06

Isoelectric Point (pI)

18.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 180
AccII CGCG 1 cut(s) 200
AciI CCGC 4 cut(s) 26, 137, 180, 200
AclWI GGATC 4 cut(s) 59, 191, 389, 402
AcoI YGGCCR 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 2 cut(s) 13, 300
AluBI AGCT 2 cut(s) 72, 346
AluI AGCT 2 cut(s) 72, 346
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 4 cut(s) 59, 191, 389, 402
AoxI GGCC 1 cut(s) 75
AspLEI GCGC 3 cut(s) 116, 200, 226
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 288
BamHI GGATCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BcoDI GTCTC 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 288
BmgBI CACGTC 2 cut(s) 13, 300
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 289, 396
BmrI ACTGGG 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 232, 351, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 100, 178
BseDI CCNNGG 3 cut(s) 232, 351, 398
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 238
BseNI ACTGG 2 cut(s) 100, 178
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 2 cut(s) 2, 122
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 60
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 4 cut(s) 6, 51, 183, 394
BspACI CCGC 4 cut(s) 26, 137, 180, 200
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 289, 396
BspPI GGATC 4 cut(s) 59, 191, 389, 402
BsrBI CCGCTC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 2 cut(s) 100, 178
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 3 cut(s) 232, 351, 398
BssMI GATC 4 cut(s) 6, 51, 183, 394
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 2 cut(s) 232, 398
Bst4CI ACNGT 6 cut(s) 19, 166, 313, 326, 337, 389
BstACI GRCGYC 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 24, 123
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 3 cut(s) 116, 200, 226
BstKTI GATC 4 cut(s) 9, 54, 186, 397
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 4 cut(s) 6, 51, 183, 394
BstMWI GCNNNNNNNGC 2 cut(s) 122, 211
BstNSI RCATGY 1 cut(s) 260
BstUI CGCG 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 51, 394
BstYI RGATCY 2 cut(s) 51, 394
BsuRI GGCC 1 cut(s) 77
BtrI CACGTC 2 cut(s) 13, 300
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 24, 123
CfoI GCGC 3 cut(s) 116, 200, 226
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 1 cut(s) 365
CviAII CATG 1 cut(s) 257
CviJI RGCY 8 cut(s) 72, 77, 136, 190, 214, 231, 266, 346
CviKI_1 RGCY 8 cut(s) 72, 77, 136, 190, 214, 231, 266, 346
DpnI GATC 4 cut(s) 8, 53, 185, 396
DpnII GATC 4 cut(s) 6, 51, 183, 394
EaeI YGGCCR 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 232, 398
Eco24I GRGCYC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 288
EcoT14I CCWWGG 2 cut(s) 232, 398
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 232, 398
FaeI CATG 1 cut(s) 260
FaiI YATR 1 cut(s) 258
FatI CATG 1 cut(s) 256
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 137
GlaI GCGC 3 cut(s) 115, 199, 225
GluI GCNGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 77
HapII CCGG 2 cut(s) 2, 122
HgaI GACGC 1 cut(s) 365
HhaI GCGC 3 cut(s) 116, 200, 226
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 3 cut(s) 114, 198, 224
HinP1I GCGC 3 cut(s) 114, 198, 224
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 276
HpaII CCGG 2 cut(s) 2, 122
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 303, 322
Hpy188I TCNGA 2 cut(s) 263, 355
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 2 cut(s) 303, 322
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 6 cut(s) 19, 166, 313, 326, 337, 389
HpyCH4IV ACGT 4 cut(s) 12, 81, 147, 299
HpyCH4V TGCA 3 cut(s) 205, 256, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 211
HpySE526I ACGT 4 cut(s) 12, 81, 147, 299
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 3 cut(s) 114, 198, 224
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 4 cut(s) 6, 51, 183, 394
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 15, 25, 113, 135, 159, 172, 200
MaeII ACGT 4 cut(s) 12, 81, 147, 299
MaeIII GTNAC 4 cut(s) 13, 107, 148, 246
MalI GATC 4 cut(s) 8, 53, 185, 396
MbiI CCGCTC 1 cut(s) 180
MboI GATC 4 cut(s) 6, 51, 183, 394
MboII GAAGA 1 cut(s) 154
MflI RGATCY 2 cut(s) 51, 394
MhlI GDGCHC 1 cut(s) 268
MnlI CCTC 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 121
MseI TTAA 3 cut(s) 294, 315, 332
MspI CCGG 2 cut(s) 2, 122
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 122, 211
NaeI GCCGGC 1 cut(s) 123
NdeII GATC 4 cut(s) 6, 51, 183, 394
NgoMIV GCCGGC 1 cut(s) 121
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 2 cut(s) 289, 396
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 3 cut(s) 13, 107, 148
NspI RCATGY 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdiI GCCGGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 289, 396
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
PsuI RGATCY 2 cut(s) 51, 394
SaqAI TTAA 3 cut(s) 294, 315, 332
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 4 cut(s) 6, 51, 183, 394
Sau96I GGNCC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 268
SetI ASST 8 cut(s) 15, 74, 84, 150, 243, 302, 348, 353
SinI GGWCC 1 cut(s) 288
SsiI CCGC 4 cut(s) 26, 137, 180, 200
StyI CCWWGG 2 cut(s) 232, 398
TaaI ACNGT 6 cut(s) 19, 166, 313, 326, 337, 389
TaiI ACGT 4 cut(s) 15, 84, 150, 302
TaqI TCGA 1 cut(s) 9
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 3 cut(s) 294, 315, 332
Tru9I TTAA 3 cut(s) 294, 315, 332
TseFI GTSAC 3 cut(s) 13, 107, 148
Tsp45I GTSAC 3 cut(s) 13, 107, 148
TspGWI ACGGA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 288
XceI RCATGY 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.