pycom11g15880

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013178
Physical Location & Seq
Forward (+)
16925848 .. 16926666
819 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g15880.1

Sequence Viewer

Length: 819 bp
ATGGCCGACCGAGTCCACCCGCGCGGCTCGCCCTCACACAACGAAACCACGCAGTTTCCTCACACCTCCTCGCCACAATCCACCCGAACACCCTCCCCTCCGGAGTCCGAGAAACTAGTCCCTCCGCCGGGCACCTACGTCATCCAGATCCCCAAGGACCAAGTCTACCGCGTCCCGCCGCCAGAGAACGCAACCCGCTACAAGAACTACACTCACCAGAACCCTCGCCGGAGCTCCTGCCGCTGCTGCTTCTGCTGGCTTTTCGGCCTCGTTGCCGCCCTCATCCTCCTCTCCGCTGCCGCCGCCGGCATCTTCTACCTCGTGGTCCGCCCCGAGTCCCCCAACTACTCAATTGAAAGCATCGCGTTCAAAGGATTCAACTTGACAACGCCATCTCCATCCTCCACCATCTCGCCGGAGATCCAGGTCACCGTTCGAGTCCAAAACCCTAACAAGAAGATCGGGATCTACTACGGGAAAAAGAACTCCGTCAAACTCTTCTACTCTGATATCAAATTGTGTGACGGCGCTCCGCCGGCGTTTTACCAGCCGTCGAAGAACGTAACGGAGTTCCGAACGGCGTTGAAGGGGTCCGGGATCAAGCTGACGAGCACGGTGCAGCAGGGGTTAGTGGATGCGCAGAGGCAGGGGAAGGTACCGTTGGAATTGGACATAAGAATGCCCGTTAGAATTAAAGTCGGGCCCATTAAGACGTGGACGATTACTGTGAAGGTTGGGTGTGATCTAACGGTGGATAAGCTGACGACGGAGGCCAAGATTGTGTCAAAGGACTGCGATTACAGTGTGGATCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

273

Amino Acids

30.17

Weight (kDa)

9.45

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 144 - 247 4.9e-14 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 639
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 2 cut(s) 131, 655
AccI GTMKAC 1 cut(s) 165
AccII CGCG 4 cut(s) 22, 24, 171, 365
AccIII TCCGGA 1 cut(s) 100
AclWI GGATC 6 cut(s) 142, 415, 473, 605, 803, 816
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 127, 128
AgsI TTSAA 4 cut(s) 356, 370, 379, 586
AhlI ACTAGT 1 cut(s) 115
AjiI CACGTC 1 cut(s) 714
AjnI CCWGG 1 cut(s) 423
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 3 cut(s) 234, 604, 760
AluI AGCT 3 cut(s) 234, 604, 760
Alw21I GWGCWC 2 cut(s) 236, 614
AlwI GGATC 6 cut(s) 142, 415, 473, 605, 803, 816
Ama87I CYCGRG 1 cut(s) 332
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 4 cut(s) 3, 265, 701, 771
ApaI GGGCCC 1 cut(s) 705
ApeKI GCWGC 4 cut(s) 243, 246, 296, 619
Asp718I GGTACC 1 cut(s) 655
AspLEI GCGC 3 cut(s) 24, 530, 640
AspS9I GGNCC 5 cut(s) 157, 325, 591, 701, 702
AsuC2I CCSGG 2 cut(s) 129, 595
AsuHPI GGTGA 2 cut(s) 206, 421
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 3 cut(s) 157, 325, 591
BaeGI GKGCMC 2 cut(s) 134, 705
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 2 cut(s) 131, 655
BanII GRGCYC 2 cut(s) 236, 705
BauI CACGAG 1 cut(s) 320
Bbv12I GWGCWC 2 cut(s) 236, 614
BbvI GCAGC 4 cut(s) 230, 233, 283, 631
BccI CCATC 3 cut(s) 400, 406, 416
BceAI ACGGC 3 cut(s) 535, 541, 594
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 2 cut(s) 129, 595
BcuI ACTAGT 1 cut(s) 115
BfaI CTAG 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 531
Bme1390I CCNGG 3 cut(s) 129, 425, 595
Bme18I GGWCC 3 cut(s) 157, 325, 591
BmeT110I CYCGRG 1 cut(s) 332
BmgBI CACGTC 1 cut(s) 714
BmgT120I GGNCC 5 cut(s) 157, 325, 591, 701, 702
BmiI GGNNCC 5 cut(s) 133, 592, 657, 703, 810
BmrFI CCNGG 3 cut(s) 129, 425, 595
BmsI GCATC 3 cut(s) 318, 369, 625
BpuMI CCSGG 2 cut(s) 129, 595
BsaBI GATNNNNATC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 153, 812
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 128
Bse118I RCCGGY 2 cut(s) 305, 535
Bse8I GATNNNNATC 1 cut(s) 464
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 153, 812
BseGI GGATG 4 cut(s) 141, 282, 398, 640
BseJI GATNNNNATC 1 cut(s) 464
BseLI CCNNNNNNNGG 2 cut(s) 127, 128
BseRI GAGGAG 2 cut(s) 58, 278
BseSI GKGCMC 2 cut(s) 134, 705
BseXI GCAGC 4 cut(s) 230, 233, 283, 631
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 4 cut(s) 22, 24, 171, 365
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 4 cut(s) 5, 267, 703, 773
BshNI GGYRCC 2 cut(s) 131, 655
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 236, 614
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 7 cut(s) 101, 128, 229, 306, 416, 536, 594
BslFI GGGAC 3 cut(s) 104, 158, 322
BslI CCNNNNNNNGG 2 cut(s) 127, 128
BsmFI GGGAC 3 cut(s) 104, 158, 322
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 4 cut(s) 5, 267, 703, 773
BsoBI CYCGRG 1 cut(s) 332
Bsp120I GGGCCC 1 cut(s) 701
Bsp1286I GDGCHC 4 cut(s) 134, 236, 614, 705
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
BspANI GGCC 4 cut(s) 5, 267, 703, 773
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 4 cut(s) 22, 24, 171, 365
BspLI GGNNCC 5 cut(s) 133, 592, 657, 703, 810
BspPI GGATC 6 cut(s) 142, 415, 473, 605, 803, 816
BspT107I GGYRCC 2 cut(s) 131, 655
BsrFI RCCGGY 2 cut(s) 305, 535
BssAI RCCGGY 2 cut(s) 305, 535
BssECI CCNNGG 2 cut(s) 153, 812
BssMI GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 153, 812
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 6 cut(s) 433, 616, 660, 727, 751, 803
Bst6I CTCTTC 1 cut(s) 503
BstC8I GCNNGC 4 cut(s) 29, 257, 307, 537
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 4 cut(s) 141, 282, 398, 640
BstFNI CGCG 4 cut(s) 22, 24, 171, 365
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 3 cut(s) 24, 530, 640
BstKTI GATC 7 cut(s) 150, 423, 462, 468, 600, 745, 811
BstMBI GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 6 cut(s) 28, 240, 246, 252, 302, 536
BstNI CCWGG 1 cut(s) 425
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 127, 423, 593
BstSLI GKGCMC 2 cut(s) 134, 705
BstUI CGCG 4 cut(s) 22, 24, 171, 365
BstV1I GCAGC 4 cut(s) 230, 233, 283, 631
BstX2I RGATCY 4 cut(s) 147, 420, 465, 808
BstYI RGATCY 4 cut(s) 147, 420, 465, 808
BsuRI GGCC 4 cut(s) 5, 267, 703, 773
BtgZI GCGATG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 714
BtsCI GGATG 4 cut(s) 141, 282, 398, 640
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 4 cut(s) 29, 257, 307, 537
CfoI GCGC 3 cut(s) 24, 530, 640
Cfr10I RCCGGY 2 cut(s) 305, 535
Cfr13I GGNCC 5 cut(s) 157, 325, 591, 701, 702
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 656
CviQI GTAC 1 cut(s) 656
DpnI GATC 7 cut(s) 149, 422, 461, 467, 599, 744, 810
DpnII GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 3 cut(s) 114, 317, 522
Ecl136II GAGCTC 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 153, 812
Eco24I GRGCYC 2 cut(s) 236, 705
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 3 cut(s) 157, 325, 591
Eco53kI GAGCTC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 332
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 234
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 423
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 2 cut(s) 153, 812
EcoT38I GRGCYC 2 cut(s) 236, 705
ErhI CCWWGG 2 cut(s) 153, 812
FaiI YATR 1 cut(s) 674
FaqI GGGAC 3 cut(s) 104, 158, 322
FauI CCCGC 3 cut(s) 27, 183, 203
FblI GTMKAC 1 cut(s) 165
FokI GGATG 4 cut(s) 128, 269, 385, 647
FriOI GRGCYC 2 cut(s) 236, 705
FspBI CTAG 1 cut(s) 116
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 3 cut(s) 23, 529, 639
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 4 cut(s) 5, 267, 703, 773
HapII CCGG 7 cut(s) 101, 128, 229, 306, 416, 536, 594
HgaI GACGC 1 cut(s) 160
HhaI GCGC 3 cut(s) 24, 530, 640
Hin6I GCGC 3 cut(s) 22, 528, 638
HinP1I GCGC 3 cut(s) 22, 528, 638
HinfI GANTC 5 cut(s) 12, 104, 335, 375, 438
HpaII CCGG 7 cut(s) 101, 128, 229, 306, 416, 536, 594
HphI GGTGA 2 cut(s) 206, 421
Hpy166II GTNNAC 3 cut(s) 16, 166, 717
Hpy188I TCNGA 3 cut(s) 109, 508, 575
Hpy188III TCNNGA 3 cut(s) 101, 145, 463
Hpy8I GTNNAC 3 cut(s) 16, 166, 717
Hpy99I CGWCG 2 cut(s) 556, 769
HpyAV CCTTC 3 cut(s) 580, 646, 724
HpyCH4III ACNGT 6 cut(s) 433, 616, 660, 727, 751, 803
HpyCH4IV ACGT 3 cut(s) 138, 561, 713
HpyCH4V TGCA 1 cut(s) 619
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 240, 246, 252, 302, 536
HpySE526I ACGT 3 cut(s) 138, 561, 713
HspAI GCGC 3 cut(s) 22, 528, 638
Kpn2I TCCGGA 1 cut(s) 100
KpnI GGTACC 1 cut(s) 659
KroI GCCGGC 2 cut(s) 305, 535
KroNI GCCGGC 2 cut(s) 307, 537
Kzo9I GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
LmnI GCTCC 3 cut(s) 231, 239, 535
Lsp1109I GCAGC 4 cut(s) 230, 233, 283, 631
LweI GCATC 3 cut(s) 318, 369, 625
MaeI CTAG 1 cut(s) 116
MaeII ACGT 3 cut(s) 138, 561, 713
MaeIII GTNAC 3 cut(s) 427, 521, 562
MalI GATC 7 cut(s) 149, 422, 461, 467, 599, 744, 810
MboI GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
MboII GAAGA 4 cut(s) 304, 469, 490, 568
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 4 cut(s) 147, 420, 465, 808
MhlI GDGCHC 4 cut(s) 134, 236, 614, 705
MluCI AATT 4 cut(s) 351, 515, 665, 690
MlyI GAGTC 4 cut(s) 21, 113, 344, 447
MmeI TCCRAC 1 cut(s) 642
MreI CGCCGGCG 1 cut(s) 535
MroI TCCGGA 1 cut(s) 100
MroNI GCCGGC 2 cut(s) 305, 535
MseI TTAA 2 cut(s) 693, 708
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 243, 296
MspI CCGG 7 cut(s) 101, 128, 229, 306, 416, 536, 594
MspR9I CCNGG 3 cut(s) 129, 425, 595
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 4 cut(s) 22, 24, 171, 365
MwoI GCNNNNNNNGC 6 cut(s) 28, 240, 246, 252, 302, 536
NaeI GCCGGC 2 cut(s) 307, 537
NciI CCSGG 2 cut(s) 129, 595
NdeII GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
NgoMIV GCCGGC 2 cut(s) 305, 535
NlaIV GGNNCC 5 cut(s) 133, 592, 657, 703, 810
NmuCI GTSAC 2 cut(s) 427, 521
NsbI TGCGCA 1 cut(s) 639
PctI GAATGC 1 cut(s) 684
PdiI GCCGGC 2 cut(s) 307, 537
PfeI GAWTC 1 cut(s) 375
PflFI GACNNNGTC 2 cut(s) 11, 161
PfoI TCCNGGA 1 cut(s) 593
PleI GAGTC 4 cut(s) 20, 112, 343, 446
PpsI GAGTC 4 cut(s) 20, 112, 343, 446
Psp124BI GAGCTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 423
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 5 cut(s) 133, 592, 657, 703, 810
PspOMI GGGCCC 1 cut(s) 701
PspPI GGNCC 5 cut(s) 157, 325, 591, 701, 702
PsuI RGATCY 4 cut(s) 147, 420, 465, 808
PsyI GACNNNGTC 2 cut(s) 11, 161
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 693, 708
Sau3AI GATC 7 cut(s) 147, 420, 459, 465, 597, 742, 808
Sau96I GGNCC 5 cut(s) 157, 325, 591, 701, 702
SchI GAGTC 4 cut(s) 21, 113, 344, 447
ScrFI CCNGG 3 cut(s) 129, 425, 595
SduI GDGCHC 4 cut(s) 134, 236, 614, 705
SfaNI GCATC 3 cut(s) 318, 369, 625
SgrAI CRCCGGYG 1 cut(s) 535
SinI GGWCC 3 cut(s) 157, 325, 591
SmiMI CAYNNNNRTG 1 cut(s) 677
SpeI ACTAGT 1 cut(s) 115
Sse9I AATT 4 cut(s) 351, 515, 665, 690
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 3 cut(s) 127, 423, 593
StyI CCWWGG 2 cut(s) 153, 812
TaaI ACNGT 6 cut(s) 433, 616, 660, 727, 751, 803
TaiI ACGT 3 cut(s) 141, 564, 716
TaqI TCGA 2 cut(s) 436, 554
TaqII GACCGA 1 cut(s) 24
TasI AATT 4 cut(s) 351, 515, 665, 690
TauI GCSGC 6 cut(s) 27, 181, 243, 278, 302, 305
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 2 cut(s) 693, 708
Tru9I TTAA 2 cut(s) 693, 708
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 2 cut(s) 427, 521
TseI GCWGC 4 cut(s) 243, 246, 296, 619
Tsp45I GTSAC 2 cut(s) 427, 521
TspGWI ACGGA 3 cut(s) 478, 581, 782
TspRI CASTG 1 cut(s) 808
Tth111I GACNNNGTC 2 cut(s) 11, 161
VpaK11BI GGWCC 3 cut(s) 157, 325, 591
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.