Prupe.6G155500_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013178
Physical Location & Seq
Forward (+)
13578502 .. 13581286
2785 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G155500.1

Sequence Viewer

Length: 801 bp
ATGGCCGACCGAGTCCACCCGCGCGACTCGCCCTTTCACACCGAAACGACGCCGTTGTCCTTATCAAGGCCCTCACCGCCAGACTCCGAGAAGCCCGTCCCTCCGCCGGGCACCTACGTCATCCAGATCCCCAAAGATCAGGTCTACCGGGTCCCGCCGCCGGAGAATGCCAGCCGCTACCAGAGCTACACTCATCGGAAGACTCGCCGGAGCTCCTGCCACTGCTGCTGCTGCTGGTTCCTTGGCCTCCTCGCCGCCATCGTTTTCCTCTCCGCGGCCGCCGCCGGCATCTTCTACCTCGTCGTCCGCCCCGAGGCCCCCAACTACTCCGTTGAGAGCATCGCATTTAAAGGCTTCAACCTCACAACGACGTCGTCCCCGCCGTCCGCCATCTCGCCTGAGATCCACGTCACCGTCCGGGCCCAGAACCCTAACAAGAAGATCGGGATCTACTACGAGAGAGAGAGCTCCGTCAAGCTCTTTTACTCCGACATCAAACTGTGTGACGGCGTTCTGCCAGCGTTTTACCAGCCGTCAAAGAACGTAACAGAGTTTCGAACGGCGTTAACTGGGTCCGGGATCGAGCTGACAAGCGCAGTGCAGAAGGGCTTAGTGGATGCACAGAAGCAAGGGAAGGTGCCGTTAGAGTTGGACCTGAGAGCGCCCGTTAGAATTAAAGTGGGGCCCATTAAGACGTGGACGATTACCGTAAAGGTTGCCTGTCACTTAACGGTCAATAAACTGACAGCAGACGCCAACATTGTGTCTAGGGACTGTGATTACAGCGTGGATCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

29.42

Weight (kDa)

9.05

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AatII GACGTC 1 cut(s) 374
AccB1I GGYRCC 2 cut(s) 110, 637
AccI GTMKAC 1 cut(s) 144
AccII CGCG 3 cut(s) 22, 24, 275
AclWI GGATC 6 cut(s) 121, 397, 455, 587, 785, 798
AcoI YGGCCR 2 cut(s) 3, 276
AcyI GRCGYC 3 cut(s) 50, 371, 753
AfiI CCNNNNNNNGG 6 cut(s) 66, 106, 107, 160, 274, 313
AgsI TTSAA 1 cut(s) 358
AjiI CACGTC 2 cut(s) 409, 696
AluBI AGCT 5 cut(s) 186, 213, 468, 478, 586
AluI AGCT 5 cut(s) 186, 213, 468, 478, 586
Alw21I GWGCWC 2 cut(s) 215, 470
AlwI GGATC 6 cut(s) 121, 397, 455, 587, 785, 798
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 7 cut(s) 3, 68, 244, 276, 315, 420, 683
ApaI GGGCCC 2 cut(s) 424, 687
ApeKI GCWGC 3 cut(s) 225, 228, 231
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspLEI GCGC 3 cut(s) 24, 596, 664
AspS9I GGNCC 9 cut(s) 69, 151, 316, 420, 421, 573, 652, 683, 684
AsuC2I CCSGG 4 cut(s) 108, 149, 419, 577
AsuHPI GGTGA 2 cut(s) 66, 403
AsuII TTCGAA 1 cut(s) 556
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 3 cut(s) 151, 573, 652
BaeGI GKGCMC 3 cut(s) 113, 424, 687
BamHI GGATCC 1 cut(s) 790
BanI GGYRCC 2 cut(s) 110, 637
BanII GRGCYC 4 cut(s) 215, 424, 470, 687
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 215, 470
BbvI GCAGC 3 cut(s) 212, 215, 218
BccI CCATC 2 cut(s) 266, 398
BceAI ACGGC 6 cut(s) 37, 367, 517, 523, 576, 625
BcnI CCSGG 4 cut(s) 108, 149, 419, 577
BfaI CTAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 665
BisI GCNGC 9 cut(s) 158, 175, 226, 229, 232, 255, 276, 279, 282
BlsI GCNGC 9 cut(s) 159, 176, 227, 230, 233, 256, 277, 280, 283
Bme1390I CCNGG 4 cut(s) 108, 149, 419, 577
Bme18I GGWCC 3 cut(s) 151, 573, 652
BmeT110I CYCGRG 1 cut(s) 311
BmgBI CACGTC 2 cut(s) 409, 696
BmgT120I GGNCC 9 cut(s) 69, 151, 316, 420, 421, 573, 652, 683, 684
BmrFI CCNGG 4 cut(s) 108, 149, 419, 577
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 3 cut(s) 297, 348, 607
BmuI ACTGGG 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu14I TTCGAA 1 cut(s) 556
BpuMI CCSGG 4 cut(s) 108, 149, 419, 577
BsaBI GATNNNNATC 1 cut(s) 446
BsaHI GRCGYC 3 cut(s) 50, 371, 753
BsaJI CCNNGG 4 cut(s) 241, 273, 312, 794
Bsc4I CCNNNNNNNGG 6 cut(s) 66, 106, 107, 160, 274, 313
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 574
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 4 cut(s) 241, 273, 312, 794
BseGI GGATG 2 cut(s) 120, 622
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 6 cut(s) 66, 106, 107, 160, 274, 313
BseMII CTCAG 2 cut(s) 390, 647
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 3 cut(s) 113, 424, 687
BseX3I CGGCCG 1 cut(s) 276
BseXI GCAGC 3 cut(s) 212, 215, 218
BsgI GTGCAG 1 cut(s) 620
Bsh1236I CGCG 3 cut(s) 22, 24, 275
Bsh1285I CGRYCG 2 cut(s) 10, 279
BshFI GGCC 7 cut(s) 5, 70, 246, 278, 317, 422, 685
BshNI GGYRCC 2 cut(s) 110, 637
BsiEI CGRYCG 2 cut(s) 10, 279
BsiHKAI GWGCWC 2 cut(s) 215, 470
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 7 cut(s) 107, 148, 161, 208, 285, 418, 576
BslFI GGGAC 4 cut(s) 83, 137, 361, 785
BslI CCNNNNNNNGG 6 cut(s) 66, 106, 107, 160, 274, 313
BsmFI GGGAC 4 cut(s) 83, 137, 361, 785
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 7 cut(s) 5, 70, 246, 278, 317, 422, 685
BsoBI CYCGRG 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 556
Bsp120I GGGCCC 2 cut(s) 420, 683
Bsp1286I GDGCHC 5 cut(s) 113, 215, 424, 470, 687
Bsp143I GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
BspANI GGCC 7 cut(s) 5, 70, 246, 278, 317, 422, 685
BspCNI CTCAG 2 cut(s) 391, 648
BspFNI CGCG 3 cut(s) 22, 24, 275
BspPI GGATC 6 cut(s) 121, 397, 455, 587, 785, 798
BspT104I TTCGAA 1 cut(s) 556
BspT107I GGYRCC 2 cut(s) 110, 637
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 574
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 4 cut(s) 241, 273, 312, 794
BssMI GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
BssNI GRCGYC 3 cut(s) 50, 371, 753
BssT1I CCWWGG 2 cut(s) 241, 794
Bst4CI ACNGT 5 cut(s) 415, 501, 709, 733, 776
BstACI GRCGYC 3 cut(s) 50, 371, 753
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 3 cut(s) 172, 286, 519
BstDEI CTNAG 3 cut(s) 399, 610, 656
BstDSI CCRYGG 1 cut(s) 273
BstENI CCTNNNNNAGG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 120, 622
BstFNI CGCG 3 cut(s) 22, 24, 275
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 3 cut(s) 24, 596, 664
BstKTI GATC 7 cut(s) 129, 139, 405, 444, 450, 582, 793
BstMBI GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
BstMCI CGRYCG 2 cut(s) 10, 279
BstMWI GCNNNNNNNGC 6 cut(s) 28, 76, 183, 225, 231, 281
BstSCI CCNGG 4 cut(s) 106, 147, 417, 575
BstSLI GKGCMC 3 cut(s) 113, 424, 687
BstUI CGCG 3 cut(s) 22, 24, 275
BstV1I GCAGC 3 cut(s) 212, 215, 218
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 4 cut(s) 126, 402, 447, 790
BstYI RGATCY 4 cut(s) 126, 402, 447, 790
BstZI CGGCCG 1 cut(s) 276
BsuRI GGCC 7 cut(s) 5, 70, 246, 278, 317, 422, 685
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 325
BtrI CACGTC 2 cut(s) 409, 696
BtsCI GGATG 2 cut(s) 120, 622
BtsI GCAGTG 2 cut(s) 220, 603
BtsIMutI CAGTG 2 cut(s) 220, 603
Cac8I GCNNGC 3 cut(s) 172, 286, 519
CciNI GCGGCCGC 1 cut(s) 276
CfoI GCGC 3 cut(s) 24, 596, 664
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 9 cut(s) 69, 151, 316, 420, 421, 573, 652, 683, 684
Cfr42I CCGCGG 1 cut(s) 276
CseI GACGC 2 cut(s) 58, 761
DdeI CTNAG 3 cut(s) 399, 610, 656
DpnI GATC 7 cut(s) 128, 138, 404, 443, 449, 581, 792
DpnII GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
DraI TTTAAA 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 2 cut(s) 3, 276
EagI CGGCCG 1 cut(s) 276
EciI GGCGGA 3 cut(s) 93, 296, 376
Ecl136II GAGCTC 2 cut(s) 213, 468
EclXI CGGCCG 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 241, 794
Eco24I GRGCYC 4 cut(s) 215, 424, 470, 687
Eco47I GGWCC 3 cut(s) 151, 573, 652
Eco52I CGGCCG 1 cut(s) 276
Eco53kI GAGCTC 2 cut(s) 213, 468
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 213, 468
EcoNI CCTNNNNNAGG 1 cut(s) 64
EcoO109I RGGNCCY 4 cut(s) 69, 151, 316, 683
EcoT14I CCWWGG 2 cut(s) 241, 794
EcoT38I GRGCYC 4 cut(s) 215, 424, 470, 687
ErhI CCWWGG 2 cut(s) 241, 794
FaqI GGGAC 4 cut(s) 83, 137, 361, 785
FauI CCCGC 3 cut(s) 27, 162, 387
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 9 cut(s) 158, 175, 226, 229, 232, 255, 276, 279, 282
FokI GGATG 2 cut(s) 107, 629
FriOI GRGCYC 4 cut(s) 215, 424, 470, 687
Fsp4HI GCNGC 9 cut(s) 158, 175, 226, 229, 232, 255, 276, 279, 282
FspBI CTAG 1 cut(s) 768
GlaI GCGC 3 cut(s) 23, 595, 663
GluI GCNGC 9 cut(s) 158, 175, 226, 229, 232, 255, 276, 279, 282
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 7 cut(s) 5, 70, 246, 278, 317, 422, 685
HapII CCGG 7 cut(s) 107, 148, 161, 208, 285, 418, 576
HgaI GACGC 2 cut(s) 58, 761
HhaI GCGC 3 cut(s) 24, 596, 664
Hin1I GRCGYC 3 cut(s) 50, 371, 753
Hin6I GCGC 3 cut(s) 22, 594, 662
HinP1I GCGC 3 cut(s) 22, 594, 662
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 4 cut(s) 12, 26, 83, 202
HpaI GTTAAC 1 cut(s) 567
HpaII CCGG 7 cut(s) 107, 148, 161, 208, 285, 418, 576
HphI GGTGA 2 cut(s) 66, 403
Hpy166II GTNNAC 4 cut(s) 16, 145, 567, 699
Hpy188I TCNGA 3 cut(s) 88, 198, 490
Hpy188III TCNNGA 2 cut(s) 124, 445
Hpy8I GTNNAC 4 cut(s) 16, 145, 567, 699
Hpy99I CGWCG 4 cut(s) 52, 305, 373, 376
HpyAV CCTTC 2 cut(s) 598, 628
HpyCH4III ACNGT 5 cut(s) 415, 501, 709, 733, 776
HpyCH4IV ACGT 5 cut(s) 117, 371, 408, 543, 695
HpyCH4V TGCA 2 cut(s) 601, 620
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 76, 183, 225, 231, 281
HpyF3I CTNAG 3 cut(s) 399, 610, 656
HpySE526I ACGT 5 cut(s) 117, 371, 408, 543, 695
Hsp92I GRCGYC 3 cut(s) 50, 371, 753
HspAI GCGC 3 cut(s) 22, 594, 662
KflI GGGWCCC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 567
KspI CCGCGG 1 cut(s) 276
Kzo9I GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
LmnI GCTCC 3 cut(s) 210, 218, 473
Lsp1109I GCAGC 3 cut(s) 212, 215, 218
LweI GCATC 3 cut(s) 297, 348, 607
MaeI CTAG 1 cut(s) 768
MaeII ACGT 5 cut(s) 117, 371, 408, 543, 695
MaeIII GTNAC 4 cut(s) 409, 503, 544, 722
MalI GATC 7 cut(s) 128, 138, 404, 443, 449, 581, 792
MboI GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
MboII GAAGA 3 cut(s) 211, 283, 451
MflI RGATCY 4 cut(s) 126, 402, 447, 790
MhlI GDGCHC 5 cut(s) 113, 215, 424, 470, 687
MluCI AATT 1 cut(s) 672
MlyI GAGTC 4 cut(s) 20, 21, 77, 196
MmeI TCCRAC 2 cut(s) 513, 630
MnlI CCTC 8 cut(s) 82, 111, 257, 260, 278, 307, 308, 371
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 5 cut(s) 348, 566, 675, 690, 728
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 7 cut(s) 107, 148, 161, 208, 285, 418, 576
MspR9I CCNGG 4 cut(s) 108, 149, 419, 577
Mva1269I GAATGC 1 cut(s) 172
MvnI CGCG 3 cut(s) 22, 24, 275
MwoI GCNNNNNNNGC 6 cut(s) 28, 76, 183, 225, 231, 281
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 4 cut(s) 108, 149, 419, 577
NdeII GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
NgoMIV GCCGGC 1 cut(s) 284
NmuCI GTSAC 3 cut(s) 409, 503, 722
NotI GCGGCCGC 1 cut(s) 276
NspV TTCGAA 1 cut(s) 556
PcsI WCGNNNNNNNCGW 3 cut(s) 258, 309, 380
PctI GAATGC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 286
PflFI GACNNNGTC 2 cut(s) 11, 373
PfoI TCCNGGA 1 cut(s) 575
PkrI GCNGC 9 cut(s) 159, 176, 227, 230, 233, 256, 277, 280, 283
PleI GAGTC 4 cut(s) 20, 20, 77, 196
PpsI GAGTC 4 cut(s) 20, 20, 77, 196
PpuMI RGGWCCY 1 cut(s) 151
Psp124BI GAGCTC 2 cut(s) 215, 470
Psp5II RGGWCCY 1 cut(s) 151
PspOMI GGGCCC 2 cut(s) 420, 683
PspPI GGNCC 9 cut(s) 69, 151, 316, 420, 421, 573, 652, 683, 684
PspPPI RGGWCCY 1 cut(s) 151
PsuI RGATCY 4 cut(s) 126, 402, 447, 790
PsyI GACNNNGTC 2 cut(s) 11, 373
SacI GAGCTC 2 cut(s) 215, 470
SacII CCGCGG 1 cut(s) 276
SaqAI TTAA 5 cut(s) 348, 566, 675, 690, 728
SatI GCNGC 9 cut(s) 158, 175, 226, 229, 232, 255, 276, 279, 282
Sau3AI GATC 7 cut(s) 126, 136, 402, 441, 447, 579, 790
Sau96I GGNCC 9 cut(s) 69, 151, 316, 420, 421, 573, 652, 683, 684
SchI GAGTC 4 cut(s) 20, 21, 77, 196
ScrFI CCNGG 4 cut(s) 108, 149, 419, 577
SduI GDGCHC 5 cut(s) 113, 215, 424, 470, 687
SfaNI GCATC 3 cut(s) 297, 348, 607
Sfr303I CCGCGG 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 556
SgrBI CCGCGG 1 cut(s) 276
SinI GGWCC 3 cut(s) 151, 573, 652
Sse9I AATT 1 cut(s) 672
SspMI CTAG 1 cut(s) 768
SstI GAGCTC 2 cut(s) 215, 470
StyD4I CCNGG 4 cut(s) 106, 147, 417, 575
StyI CCWWGG 2 cut(s) 241, 794
TaaI ACNGT 5 cut(s) 415, 501, 709, 733, 776
TaiI ACGT 5 cut(s) 120, 374, 411, 546, 698
TaqI TCGA 2 cut(s) 556, 582
TaqII GACCGA 1 cut(s) 24
TasI AATT 1 cut(s) 672
TauI GCSGC 6 cut(s) 160, 177, 257, 278, 281, 284
Tru1I TTAA 5 cut(s) 348, 566, 675, 690, 728
Tru9I TTAA 5 cut(s) 348, 566, 675, 690, 728
TscAI CASTG 2 cut(s) 227, 603
TseFI GTSAC 3 cut(s) 409, 503, 722
TseI GCWGC 3 cut(s) 225, 228, 231
Tsp45I GTSAC 3 cut(s) 409, 503, 722
TspGWI ACGGA 2 cut(s) 319, 460
TspRI CASTG 2 cut(s) 227, 603
Tth111I GACNNNGTC 2 cut(s) 11, 373
VpaK11BI GGWCC 3 cut(s) 151, 573, 652
XagI CCTNNNNNAGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 768
ZraI GACGTC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.