pycom5153684g00370

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012527_4311101_to_5153684
OG0013178
Physical Location & Seq
Reverse (-)
569881 .. 570699
819 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom5153684g00370.1

Sequence Viewer

Length: 819 bp
ATGGCCGACCGAGTCCACCCCCGCGACTCGCCCCTACACAACGAGACGGCGCCGTTTCCTTACACCTCCTCATCGGAATCCCCCCGAAAGCCCTCCCCTCCGGAGTCCGAGAAGCCAGTCCCTCCGCCGGGCACCTACGTCATCCAGATCCCCAAGGACCAAGTCTACCGCTTCCCGCCGCCAGAGAACGCAACCCGCTACAAGAATTACACTCGTCAGAACCCTCGCCGAAGTTCCTGCCGCTGCTGCTTCTGCTGGTTCTTCGGCCTCGTTGCCGCCCTCATCCTCCTCTCCGCCGCCGCCGCCGGCATCTTCTACCTCGTGGTCCGCCCCAAATCCCCCAACTACTCAATCGATAGCATCGCGTTCAGAGGATTCAACTTGACGGCGCCGTCCCCGTCCTACGCCATCTCGCCGGAGATCCAGGTCACCGTTCGAGCCCAAAACCCTAACAAAAAGATCGGGTTCTACTACGGAAAAAAGAGCTCCGTCAAACTCTTCTACTCCGACGTCAAATTGTGCGACGGAGCTCTGCCGGCGTTTTACCAGCCGTCAAAGAACGTAACGGTGTTCCAGACGGCGTTAAAGGGGTCGGGGATCGAGCTGACGAGCACGGCACAGCAGGGGTTAGTGGATGCGCAGAAGCAGGGGAAGGTACCGTTGGGATTGGACATAAGAATGCCCGTTAGGATTAAAGTGGGGCCCATAAAGACGTGGACGATCAATGTCAAGGTTGGGTGTGATCTAACGGTGGATAAGCTGACGACGGAGGCCAAGATTGTGTCAAAGGACTGTGATTACAGTGTGGATCCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

273

Amino Acids

30.16

Weight (kDa)

9.47

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 144 - 247 1.7e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AatII GACGTC 1 cut(s) 513
Acc16I TGCGCA 1 cut(s) 639
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 4 cut(s) 49, 131, 388, 655
AccI GTMKAC 1 cut(s) 165
AccII CGCG 2 cut(s) 24, 365
AccIII TCCGGA 1 cut(s) 100
AclWI GGATC 5 cut(s) 142, 415, 605, 803, 816
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 3 cut(s) 50, 389, 510
AfaI GTAC 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 127, 128
AgsI TTSAA 1 cut(s) 379
AjiI CACGTC 1 cut(s) 714
AjnI CCWGG 1 cut(s) 423
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 4 cut(s) 486, 530, 604, 760
AluI AGCT 4 cut(s) 486, 530, 604, 760
Alw21I GWGCWC 3 cut(s) 488, 532, 614
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 5 cut(s) 142, 415, 605, 803, 816
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 4 cut(s) 3, 265, 701, 771
ApaI GGGCCC 1 cut(s) 705
ApeKI GCWGC 2 cut(s) 243, 246
Asp718I GGTACC 1 cut(s) 655
AspLEI GCGC 3 cut(s) 52, 391, 640
AspS9I GGNCC 4 cut(s) 157, 325, 701, 702
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 157, 325
BaeGI GKGCMC 2 cut(s) 134, 705
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 4 cut(s) 49, 131, 388, 655
BanII GRGCYC 4 cut(s) 442, 488, 532, 705
BauI CACGAG 1 cut(s) 320
Bbv12I GWGCWC 3 cut(s) 488, 532, 614
BbvI GCAGC 2 cut(s) 230, 233
BccI CCATC 1 cut(s) 416
BceAI ACGGC 7 cut(s) 37, 63, 376, 402, 535, 594, 630
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 38
BfoI RGCGCY 2 cut(s) 53, 392
BisI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
BlsI GCNGC 8 cut(s) 180, 242, 245, 248, 277, 298, 301, 304
Bme1390I CCNGG 2 cut(s) 129, 425
Bme18I GGWCC 2 cut(s) 157, 325
BmgBI CACGTC 1 cut(s) 714
BmgT120I GGNCC 4 cut(s) 157, 325, 701, 702
BmiI GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
BmrFI CCNGG 2 cut(s) 129, 425
BmsI GCATC 3 cut(s) 318, 369, 625
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 354
BsaHI GRCGYC 3 cut(s) 50, 389, 510
BsaJI CCNNGG 2 cut(s) 153, 812
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 128
Bse118I RCCGGY 2 cut(s) 305, 535
Bse1I ACTGG 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 425
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 153, 812
BseGI GGATG 3 cut(s) 141, 282, 640
BseLI CCNNNNNNNGG 2 cut(s) 127, 128
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 58, 278
BseSI GKGCMC 2 cut(s) 134, 705
BseXI GCAGC 2 cut(s) 230, 233
Bsh1236I CGCG 2 cut(s) 24, 365
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 4 cut(s) 5, 267, 703, 773
BshNI GGYRCC 4 cut(s) 49, 131, 388, 655
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 488, 532, 614
BsiSI CCGG 5 cut(s) 101, 128, 306, 416, 536
BslFI GGGAC 2 cut(s) 104, 379
BslI CCNNNNNNNGG 2 cut(s) 127, 128
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 104, 379
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 4 cut(s) 5, 267, 703, 773
Bsp120I GGGCCC 1 cut(s) 701
Bsp1286I GDGCHC 6 cut(s) 134, 442, 488, 532, 614, 705
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
Bsp19I CCATGG 1 cut(s) 812
BspANI GGCC 4 cut(s) 5, 267, 703, 773
BspDI ATCGAT 1 cut(s) 354
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 2 cut(s) 24, 365
BspLI GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
BspPI GGATC 5 cut(s) 142, 415, 605, 803, 816
BspT107I GGYRCC 4 cut(s) 49, 131, 388, 655
BsrFI RCCGGY 2 cut(s) 305, 535
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 2 cut(s) 305, 535
BssECI CCNNGG 2 cut(s) 153, 812
BssMI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
BssNI GRCGYC 3 cut(s) 50, 389, 510
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 153, 812
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 6 cut(s) 433, 568, 660, 751, 794, 803
Bst6I CTCTTC 1 cut(s) 503
BstACI GRCGYC 3 cut(s) 50, 389, 510
BstC8I GCNNGC 2 cut(s) 307, 537
BstDSI CCRYGG 1 cut(s) 812
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 3 cut(s) 141, 282, 640
BstFNI CGCG 2 cut(s) 24, 365
BstH2I RGCGCY 2 cut(s) 53, 392
BstHHI GCGC 3 cut(s) 52, 391, 640
BstKTI GATC 7 cut(s) 150, 423, 462, 600, 723, 745, 811
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 536
BstNI CCWGG 1 cut(s) 425
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 127, 423
BstSLI GKGCMC 2 cut(s) 134, 705
BstUI CGCG 2 cut(s) 24, 365
BstV1I GCAGC 2 cut(s) 230, 233
BstX2I RGATCY 3 cut(s) 147, 420, 808
BstYI RGATCY 3 cut(s) 147, 420, 808
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 4 cut(s) 5, 267, 703, 773
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 812
BtgZI GCGATG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 714
BtsCI GGATG 3 cut(s) 141, 282, 640
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 2 cut(s) 307, 537
CfoI GCGC 3 cut(s) 52, 391, 640
Cfr10I RCCGGY 2 cut(s) 305, 535
Cfr13I GGNCC 4 cut(s) 157, 325, 701, 702
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 1 cut(s) 656
CviAII CATG 1 cut(s) 813
CviQI GTAC 1 cut(s) 656
DinI GGCGCC 2 cut(s) 51, 390
DpnI GATC 7 cut(s) 149, 422, 461, 599, 722, 744, 810
DpnII GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 3 cut(s) 114, 283, 317
Ecl136II GAGCTC 2 cut(s) 486, 530
Eco130I CCWWGG 2 cut(s) 153, 812
Eco24I GRGCYC 4 cut(s) 442, 488, 532, 705
Eco47I GGWCC 2 cut(s) 157, 325
Eco53kI GAGCTC 2 cut(s) 486, 530
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 2 cut(s) 486, 530
EcoO109I RGGNCCY 1 cut(s) 701
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 2 cut(s) 153, 812
EcoT38I GRGCYC 4 cut(s) 442, 488, 532, 705
EgeI GGCGCC 2 cut(s) 51, 390
EheI GGCGCC 2 cut(s) 51, 390
ErhI CCWWGG 2 cut(s) 153, 812
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 1 cut(s) 816
FaiI YATR 3 cut(s) 674, 707, 814
FaqI GGGAC 2 cut(s) 104, 379
FatI CATG 1 cut(s) 812
FauI CCCGC 3 cut(s) 29, 183, 203
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
FokI GGATG 3 cut(s) 128, 269, 647
FriOI GRGCYC 4 cut(s) 442, 488, 532, 705
Fsp4HI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 3 cut(s) 51, 390, 639
GluI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
HaeII RGCGCY 2 cut(s) 53, 392
HaeIII GGCC 4 cut(s) 5, 267, 703, 773
HapII CCGG 5 cut(s) 101, 128, 306, 416, 536
HhaI GCGC 3 cut(s) 52, 391, 640
Hin1I GRCGYC 3 cut(s) 50, 389, 510
Hin1II CATG 1 cut(s) 816
Hin6I GCGC 3 cut(s) 50, 389, 638
HinP1I GCGC 3 cut(s) 50, 389, 638
HinfI GANTC 5 cut(s) 12, 26, 77, 104, 375
HpaII CCGG 5 cut(s) 101, 128, 306, 416, 536
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 16, 166, 717
Hpy188I TCNGA 5 cut(s) 76, 109, 219, 371, 508
Hpy188III TCNNGA 3 cut(s) 101, 145, 574
Hpy8I GTNNAC 3 cut(s) 16, 166, 717
Hpy99I CGWCG 3 cut(s) 512, 527, 769
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 6 cut(s) 433, 568, 660, 751, 794, 803
HpyCH4IV ACGT 4 cut(s) 138, 510, 561, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 536
HpySE526I ACGT 4 cut(s) 138, 510, 561, 713
Hsp92I GRCGYC 3 cut(s) 50, 389, 510
Hsp92II CATG 1 cut(s) 816
HspAI GCGC 3 cut(s) 50, 389, 638
KasI GGCGCC 2 cut(s) 49, 388
Kpn2I TCCGGA 1 cut(s) 100
KpnI GGTACC 1 cut(s) 659
KroI GCCGGC 2 cut(s) 305, 535
KroNI GCCGGC 2 cut(s) 307, 537
Kzo9I GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
LmnI GCTCC 2 cut(s) 491, 527
Lsp1109I GCAGC 2 cut(s) 230, 233
LweI GCATC 3 cut(s) 318, 369, 625
MaeII ACGT 4 cut(s) 138, 510, 561, 713
MaeIII GTNAC 2 cut(s) 427, 562
MalI GATC 7 cut(s) 149, 422, 461, 599, 722, 744, 810
MboI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
MboII GAAGA 3 cut(s) 253, 304, 490
MflI RGATCY 3 cut(s) 147, 420, 808
MhlI GDGCHC 6 cut(s) 134, 442, 488, 532, 614, 705
MluCI AATT 2 cut(s) 205, 515
Mly113I GGCGCC 2 cut(s) 50, 389
MlyI GAGTC 3 cut(s) 20, 21, 113
MmeI TCCRAC 1 cut(s) 531
MroI TCCGGA 1 cut(s) 100
MroNI GCCGGC 2 cut(s) 305, 535
MseI TTAA 2 cut(s) 584, 693
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 5 cut(s) 101, 128, 306, 416, 536
MspR9I CCNGG 2 cut(s) 129, 425
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 2 cut(s) 24, 365
MwoI GCNNNNNNNGC 4 cut(s) 246, 252, 302, 536
NaeI GCCGGC 2 cut(s) 307, 537
NarI GGCGCC 2 cut(s) 50, 389
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 1 cut(s) 812
NdeII GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
NgoMIV GCCGGC 2 cut(s) 305, 535
NlaIII CATG 1 cut(s) 816
NlaIV GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
NmuCI GTSAC 1 cut(s) 427
NsbI TGCGCA 1 cut(s) 639
PctI GAATGC 1 cut(s) 684
PdiI GCCGGC 2 cut(s) 307, 537
PfeI GAWTC 2 cut(s) 77, 375
PflFI GACNNNGTC 2 cut(s) 11, 161
PkrI GCNGC 8 cut(s) 180, 242, 245, 248, 277, 298, 301, 304
PleI GAGTC 3 cut(s) 20, 20, 112
PluTI GGCGCC 2 cut(s) 53, 392
PpsI GAGTC 3 cut(s) 20, 20, 112
Psp124BI GAGCTC 2 cut(s) 488, 532
Psp6I CCWGG 1 cut(s) 423
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 7 cut(s) 51, 133, 390, 657, 702, 703, 810
PspOMI GGGCCC 1 cut(s) 701
PspPI GGNCC 4 cut(s) 157, 325, 701, 702
PsuI RGATCY 3 cut(s) 147, 420, 808
PsyI GACNNNGTC 2 cut(s) 11, 161
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 2 cut(s) 488, 532
SaqAI TTAA 2 cut(s) 584, 693
SatI GCNGC 8 cut(s) 179, 241, 244, 247, 276, 297, 300, 303
Sau3AI GATC 7 cut(s) 147, 420, 459, 597, 720, 742, 808
Sau96I GGNCC 4 cut(s) 157, 325, 701, 702
SchI GAGTC 3 cut(s) 20, 21, 113
ScrFI CCNGG 2 cut(s) 129, 425
SduI GDGCHC 6 cut(s) 134, 442, 488, 532, 614, 705
SfaNI GCATC 3 cut(s) 318, 369, 625
SfoI GGCGCC 2 cut(s) 51, 390
SinI GGWCC 2 cut(s) 157, 325
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 2 cut(s) 205, 515
SspDI GGCGCC 2 cut(s) 49, 388
SstI GAGCTC 2 cut(s) 488, 532
StyD4I CCNGG 2 cut(s) 127, 423
StyI CCWWGG 2 cut(s) 153, 812
TaaI ACNGT 6 cut(s) 433, 568, 660, 751, 794, 803
TaiI ACGT 4 cut(s) 141, 513, 564, 716
TaqI TCGA 3 cut(s) 354, 436, 600
TaqII GACCGA 1 cut(s) 24
TasI AATT 2 cut(s) 205, 515
TauI GCSGC 6 cut(s) 181, 243, 278, 299, 302, 305
TfiI GAWTC 2 cut(s) 77, 375
Tru1I TTAA 2 cut(s) 584, 693
Tru9I TTAA 2 cut(s) 584, 693
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 243, 246
Tsp45I GTSAC 1 cut(s) 427
TspGWI ACGGA 4 cut(s) 478, 489, 540, 782
TspRI CASTG 1 cut(s) 808
Tth111I GACNNNGTC 2 cut(s) 11, 161
VpaK11BI GGWCC 2 cut(s) 157, 325
XmiI GTMKAC 1 cut(s) 165
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.