Rh5BG340000

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013178
Physical Location & Seq
Forward (+)
48141987 .. 48145442
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG340000.1

Sequence Viewer

Length: 780 bp
ATGGCCGACCGAGTCCACCCGGGCGATTCGCCGGCTGCCCATACGGCGCCGTTGCATGCCTCCAACGACAACAACAACTCTGGCCTCCCTCAGCCGGGGACCTACGTGGTCCAAATCCCCAAGGACCAAGTCTACCGCGTCCCACCGCCGGAGAACGCCACCCTCTACAAGAACTACACTCGCCGAAAGCCTCGCCGCAACTGCTGCCGCGTCTGCTTCTGCTGGATCCTCGGCATCCTTGCCTCTCTCATCCTCCTCTCCGCCATCGCCGCCGCAGTCTTCTACCTCGTCGTCCGCCCCGAGTCCCCCAACTACTCCGTCCAAAAAATCGCATTCAAAGGCTTCAACTTCACCTCCGCGTCGTCGACCATCTCGCCGGTGATCGACGTGACCGTGCGTGCGGATAACCCTAACAGGAAAATCGGGATCTACTACGAGCGAGACAGCTCGGCCAACGTGTTCTACACTCACATCCAGTTGTGTGACGGCGCTCTGCCGGCGTTTTATCAGCCGCCGAAGAACGTGACGGAGTTGAAAACGGTGCTGACGGGGAGCGGGATCAGGCTGACGAGCGCGGTGCAAAACGGGCTGGTGGTGGCGCAGAGCCACGGCAAGGTGGCGTTTCTTCTGCATGTCCGAGCCCCCGTTAGAATCAAAGTGGGGTCCCTTAAGACGTGGACGATTACCGTTAAAGTTGACTGTGATTTAACGGTGGATAAGCTGACCTCAGACGCCAAGATTGTTTCTAACGACTGCAACTACGGTGTGGATCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

259

Amino Acids

28.44

Weight (kDa)

9.31

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 131 - 234 3.1e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27080 AT2G27080 AT5G21130
fragaria_vesca FvH4_3g27690
malus_domestica MD00G1106600.v1.1 MD00G1119400.v1.1
prunus_persica Prupe.6G155500_v2.0.a1
pyrus_communis pycom11g15880 pycom5153684g00370
rosa_chinensis RchiOBHm_Chr5g0049981
rosa_laevigata RLG00000034674
rosa_multiflora Rmu_co8414557.1_g000001
rosa_roxburghii Rroxscaffold_1G00031180
rosa_rugosa Rorug05G0256200
rosa_samantha Rh5BG340000 Rh5CG366000 Rh5DG352600
rosa_wichuraiana Rw5G031100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 555
AccI GTMKAC 2 cut(s) 132, 365
AccII CGCG 4 cut(s) 138, 210, 359, 575
AclWI GGATC 6 cut(s) 220, 233, 434, 566, 764, 777
AcoI YGGCCR 2 cut(s) 3, 450
AcyI GRCGYC 2 cut(s) 47, 732
AfiI CCNNNNNNNGG 4 cut(s) 94, 95, 148, 613
AflII CTTAAG 1 cut(s) 668
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 3 cut(s) 337, 346, 535
AjiI CACGTC 2 cut(s) 388, 675
AluBI AGCT 2 cut(s) 447, 721
AluI AGCT 2 cut(s) 447, 721
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 6 cut(s) 220, 233, 434, 566, 764, 777
Ama87I CYCGRG 2 cut(s) 19, 299
AoxI GGCC 3 cut(s) 3, 82, 450
ApeKI GCWGC 2 cut(s) 35, 204
AspLEI GCGC 4 cut(s) 49, 491, 575, 601
AspS9I GGNCC 4 cut(s) 99, 109, 124, 663
AsuC2I CCSGG 3 cut(s) 20, 21, 96
AsuHPI GGTGA 2 cut(s) 343, 391
AvaI CYCGRG 2 cut(s) 19, 299
AvaII GGWCC 4 cut(s) 99, 109, 124, 663
BamHI GGATCC 2 cut(s) 225, 769
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 22, 191
BccI CCATC 2 cut(s) 272, 377
BceAI ACGGC 4 cut(s) 34, 60, 502, 625
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BcnI CCSGG 3 cut(s) 20, 21, 96
BcoDI GTCTC 1 cut(s) 435
BfoI RGCGCY 2 cut(s) 50, 492
BfrI CTTAAG 1 cut(s) 668
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 7 cut(s) 36, 196, 205, 208, 270, 273, 512
BlsI GCNGC 7 cut(s) 37, 197, 206, 209, 271, 274, 513
Bme1390I CCNGG 3 cut(s) 20, 21, 96
Bme18I GGWCC 4 cut(s) 99, 109, 124, 663
BmeT110I CYCGRG 2 cut(s) 19, 299
BmgBI CACGTC 2 cut(s) 388, 675
BmgT120I GGNCC 4 cut(s) 99, 109, 124, 663
BmiI GGNNCC 6 cut(s) 48, 100, 227, 664, 665, 771
BmrFI CCNGG 3 cut(s) 20, 21, 96
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 90
BpuMI CCSGG 3 cut(s) 20, 21, 96
BsaAI YACGTR 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 47, 732
BsaJI CCNNGG 6 cut(s) 19, 95, 120, 229, 607, 773
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 95, 148, 613
Bse118I RCCGGY 3 cut(s) 31, 376, 496
Bse1I ACTGG 1 cut(s) 475
BseDI CCNNGG 6 cut(s) 19, 95, 120, 229, 607, 773
BseGI GGATG 3 cut(s) 234, 249, 471
BseLI CCNNNNNNNGG 4 cut(s) 94, 95, 148, 613
BseMII CTCAG 2 cut(s) 104, 741
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 22, 191
Bsh1236I CGCG 4 cut(s) 138, 210, 359, 575
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 3 cut(s) 5, 84, 452
BshNI GGYRCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 10
BsiHKCI CYCGRG 2 cut(s) 19, 299
BsiSI CCGG 6 cut(s) 20, 32, 95, 149, 377, 497
BslFI GGGAC 4 cut(s) 112, 125, 289, 649
BslI CCNNNNNNNGG 4 cut(s) 94, 95, 148, 613
BsmAI GTCTC 1 cut(s) 435
BsmFI GGGAC 4 cut(s) 112, 125, 289, 649
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 3 cut(s) 5, 84, 452
BsoBI CYCGRG 2 cut(s) 19, 299
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 5 cut(s) 225, 381, 426, 558, 769
BspANI GGCC 3 cut(s) 5, 84, 452
BspCNI CTCAG 2 cut(s) 103, 740
BspFNI CGCG 4 cut(s) 138, 210, 359, 575
BspLI GGNNCC 6 cut(s) 48, 100, 227, 664, 665, 771
BspPI GGATC 6 cut(s) 220, 233, 434, 566, 764, 777
BspT107I GGYRCC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 668
BsrBI CCGCTC 1 cut(s) 555
BsrFI RCCGGY 3 cut(s) 31, 376, 496
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 3 cut(s) 31, 376, 496
BssECI CCNNGG 6 cut(s) 19, 95, 120, 229, 607, 773
BssMI GATC 5 cut(s) 225, 381, 426, 558, 769
BssNI GRCGYC 2 cut(s) 47, 732
BssT1I CCWWGG 2 cut(s) 120, 773
Bst4CI ACNGT 6 cut(s) 394, 541, 688, 701, 712, 764
BstACI GRCGYC 2 cut(s) 47, 732
BstAFI CTTAAG 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 4 cut(s) 33, 57, 399, 498
BstDEI CTNAG 2 cut(s) 90, 727
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 3 cut(s) 234, 249, 471
BstFNI CGCG 4 cut(s) 138, 210, 359, 575
BstH2I RGCGCY 2 cut(s) 50, 492
BstHHI GCGC 4 cut(s) 49, 491, 575, 601
BstKTI GATC 5 cut(s) 228, 384, 429, 561, 772
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 5 cut(s) 225, 381, 426, 558, 769
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 7 cut(s) 44, 201, 204, 213, 269, 497, 586
BstNSI RCATGY 2 cut(s) 59, 635
BstSCI CCNGG 3 cut(s) 18, 19, 94
BstUI CGCG 4 cut(s) 138, 210, 359, 575
BstV1I GCAGC 2 cut(s) 22, 191
BstV2I GAAGAC 1 cut(s) 271
BstX2I RGATCY 3 cut(s) 225, 426, 769
BstYI RGATCY 3 cut(s) 225, 426, 769
BsuRI GGCC 3 cut(s) 5, 84, 452
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 250
BtrI CACGTC 2 cut(s) 388, 675
BtsCI GGATG 3 cut(s) 234, 249, 471
Cac8I GCNNGC 4 cut(s) 33, 57, 399, 498
CfoI GCGC 4 cut(s) 49, 491, 575, 601
Cfr10I RCCGGY 3 cut(s) 31, 376, 496
Cfr13I GGNCC 4 cut(s) 99, 109, 124, 663
Cfr9I CCCGGG 1 cut(s) 19
CseI GACGC 4 cut(s) 127, 199, 348, 740
CviAII CATG 2 cut(s) 56, 632
DdeI CTNAG 2 cut(s) 90, 727
DinI GGCGCC 1 cut(s) 48
DpnI GATC 5 cut(s) 227, 383, 428, 560, 771
DpnII GATC 5 cut(s) 225, 381, 426, 558, 769
EaeI YGGCCR 2 cut(s) 3, 450
EciI GGCGGA 2 cut(s) 250, 284
Eco130I CCWWGG 2 cut(s) 120, 773
Eco24I GRGCYC 1 cut(s) 643
Eco47I GGWCC 4 cut(s) 99, 109, 124, 663
Eco88I CYCGRG 2 cut(s) 19, 299
EcoO109I RGGNCCY 2 cut(s) 99, 663
EcoT14I CCWWGG 2 cut(s) 120, 773
EcoT38I GRGCYC 1 cut(s) 643
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 120, 773
FaeI CATG 2 cut(s) 59, 635
FaiI YATR 3 cut(s) 42, 57, 633
FaqI GGGAC 4 cut(s) 112, 125, 289, 649
FatI CATG 2 cut(s) 55, 631
FauI CCCGC 1 cut(s) 548
FblI GTMKAC 2 cut(s) 132, 365
Fnu4HI GCNGC 7 cut(s) 36, 196, 205, 208, 270, 273, 512
FokI GGATG 3 cut(s) 221, 236, 458
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 7 cut(s) 36, 196, 205, 208, 270, 273, 512
GlaI GCGC 4 cut(s) 48, 490, 574, 600
GluI GCNGC 7 cut(s) 36, 196, 205, 208, 270, 273, 512
HaeII RGCGCY 2 cut(s) 50, 492
HaeIII GGCC 3 cut(s) 5, 84, 452
HapII CCGG 6 cut(s) 20, 32, 95, 149, 377, 497
HgaI GACGC 4 cut(s) 127, 199, 348, 740
HhaI GCGC 4 cut(s) 49, 491, 575, 601
Hin1I GRCGYC 2 cut(s) 47, 732
Hin1II CATG 2 cut(s) 59, 635
Hin6I GCGC 4 cut(s) 47, 489, 573, 599
HinP1I GCGC 4 cut(s) 47, 489, 573, 599
HincII GTYRAC 2 cut(s) 366, 697
HindII GTYRAC 2 cut(s) 366, 697
HinfI GANTC 4 cut(s) 12, 26, 302, 651
HpaII CCGG 6 cut(s) 20, 32, 95, 149, 377, 497
HphI GGTGA 2 cut(s) 343, 391
Hpy166II GTNNAC 5 cut(s) 16, 133, 366, 678, 697
Hpy188I TCNGA 2 cut(s) 638, 730
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 5 cut(s) 16, 133, 366, 678, 697
Hpy99I CGWCG 4 cut(s) 293, 364, 367, 389
HpyCH4III ACNGT 6 cut(s) 394, 541, 688, 701, 712, 764
HpyCH4IV ACGT 5 cut(s) 105, 387, 456, 522, 674
HpyCH4V TGCA 4 cut(s) 55, 580, 631, 756
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 201, 204, 213, 269, 497, 586
HpyF3I CTNAG 2 cut(s) 90, 727
HpySE526I ACGT 5 cut(s) 105, 387, 456, 522, 674
Hsp92I GRCGYC 2 cut(s) 47, 732
Hsp92II CATG 2 cut(s) 59, 635
HspAI GCGC 4 cut(s) 47, 489, 573, 599
KasI GGCGCC 1 cut(s) 46
KflI GGGWCCC 1 cut(s) 663
KroI GCCGGC 2 cut(s) 31, 496
KroNI GCCGGC 2 cut(s) 33, 498
Kzo9I GATC 5 cut(s) 225, 381, 426, 558, 769
LmnI GCTCC 1 cut(s) 552
Lsp1109I GCAGC 2 cut(s) 22, 191
LweI GCATC 1 cut(s) 243
MaeII ACGT 5 cut(s) 105, 387, 456, 522, 674
MaeIII GTNAC 3 cut(s) 388, 482, 523
MalI GATC 5 cut(s) 227, 383, 428, 560, 771
MbiI CCGCTC 1 cut(s) 555
MboI GATC 5 cut(s) 225, 381, 426, 558, 769
MboII GAAGA 3 cut(s) 271, 529, 617
MflI RGATCY 3 cut(s) 225, 426, 769
MhlI GDGCHC 1 cut(s) 643
Mly113I GGCGCC 1 cut(s) 47
MlyI GAGTC 2 cut(s) 21, 311
MmeI TCCRAC 1 cut(s) 87
MroNI GCCGGC 2 cut(s) 31, 496
MseI TTAA 3 cut(s) 669, 690, 707
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 6 cut(s) 20, 32, 95, 149, 377, 497
MspR9I CCNGG 3 cut(s) 20, 21, 96
Mva1269I GAATGC 1 cut(s) 332
MvnI CGCG 4 cut(s) 138, 210, 359, 575
MwoI GCNNNNNNNGC 7 cut(s) 44, 201, 204, 213, 269, 497, 586
NaeI GCCGGC 2 cut(s) 33, 498
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 3 cut(s) 20, 21, 96
NdeII GATC 5 cut(s) 225, 381, 426, 558, 769
NgoMIV GCCGGC 2 cut(s) 31, 496
NlaIII CATG 2 cut(s) 59, 635
NlaIV GGNNCC 6 cut(s) 48, 100, 227, 664, 665, 771
NmeAIII GCCGAG 2 cut(s) 210, 428
NmuCI GTSAC 3 cut(s) 388, 482, 523
NspI RCATGY 2 cut(s) 59, 635
PaeI GCATGC 1 cut(s) 59
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 390
PctI GAATGC 1 cut(s) 332
PdiI GCCGGC 2 cut(s) 33, 498
PfeI GAWTC 2 cut(s) 26, 651
PflFI GACNNNGTC 2 cut(s) 11, 128
PkrI GCNGC 7 cut(s) 37, 197, 206, 209, 271, 274, 513
PleI GAGTC 2 cut(s) 20, 310
PluTI GGCGCC 1 cut(s) 50
PpsI GAGTC 2 cut(s) 20, 310
Ppu21I YACGTR 1 cut(s) 106
PpuMI RGGWCCY 2 cut(s) 99, 663
Psp5II RGGWCCY 2 cut(s) 99, 663
PspN4I GGNNCC 6 cut(s) 48, 100, 227, 664, 665, 771
PspPI GGNCC 4 cut(s) 99, 109, 124, 663
PspPPI RGGWCCY 2 cut(s) 99, 663
PsuI RGATCY 3 cut(s) 225, 426, 769
PsyI GACNNNGTC 2 cut(s) 11, 128
SalI GTCGAC 1 cut(s) 364
SaqAI TTAA 3 cut(s) 669, 690, 707
SatI GCNGC 7 cut(s) 36, 196, 205, 208, 270, 273, 512
Sau3AI GATC 5 cut(s) 225, 381, 426, 558, 769
Sau96I GGNCC 4 cut(s) 99, 109, 124, 663
SchI GAGTC 2 cut(s) 21, 311
ScrFI CCNGG 3 cut(s) 20, 21, 96
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 1 cut(s) 243
SfoI GGCGCC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 376
SinI GGWCC 4 cut(s) 99, 109, 124, 663
SmaI CCCGGG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SphI GCATGC 1 cut(s) 59
SspDI GGCGCC 1 cut(s) 46
StyD4I CCNGG 3 cut(s) 18, 19, 94
StyI CCWWGG 2 cut(s) 120, 773
TaaI ACNGT 6 cut(s) 394, 541, 688, 701, 712, 764
TaiI ACGT 5 cut(s) 108, 390, 459, 525, 677
TaqI TCGA 2 cut(s) 365, 384
TaqII GACCGA 1 cut(s) 24
TauI GCSGC 5 cut(s) 198, 210, 272, 275, 514
TfiI GAWTC 2 cut(s) 26, 651
Tru1I TTAA 3 cut(s) 669, 690, 707
Tru9I TTAA 3 cut(s) 669, 690, 707
TseFI GTSAC 3 cut(s) 388, 482, 523
TseI GCWGC 2 cut(s) 35, 204
Tsp45I GTSAC 3 cut(s) 388, 482, 523
TspGWI ACGGA 2 cut(s) 307, 542
TspMI CCCGGG 1 cut(s) 19
Tth111I GACNNNGTC 2 cut(s) 11, 128
Vha464I CTTAAG 1 cut(s) 668
VpaK11BI GGWCC 4 cut(s) 99, 109, 124, 663
XceI RCATGY 2 cut(s) 59, 635
XmaI CCCGGG 1 cut(s) 19
XmiI GTMKAC 2 cut(s) 132, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.