AT2G27775

Pentatricopeptide repeat-containing protein At2g27800

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012956
Physical Location & Seq
Reverse (-)
11842236 .. 11843361
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27775.1

Sequence Viewer

Length: 303 bp
ATGGCTGCAATTGGCATCGCCTCTAGGTCTGCTACATTCATGAGATCCATCAATAGAACAGCTACTGCACGAAATTTGATCTCATCCAGAGCTAGACCTTCTGTACCAAACCCTAATTTCACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCCCAGGTTGCTGCGGCGAGAATTAAGCACACAACAACCATTTCACAGCACCATTGCTGCAGCTTGCCTCGTTTCGAAACTTCCTTCTGATGTCACTTCTCCTGAAGGTAGATTTGCAAACTATCTCAGTCCTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.88

Weight (kDa)

11.86

Isoelectric Point (pI)

74.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 130
AciI CCGC 2 cut(s) 128, 178
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 105
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 3 cut(s) 62, 92, 227
AluI AGCT 3 cut(s) 62, 92, 227
AlwI GGATC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 65
ApeKI GCWGC 4 cut(s) 5, 175, 221, 224
ApoI RAATTY 1 cut(s) 73
AspLEI GCGC 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 239
BbvI GCAGC 3 cut(s) 162, 208, 236
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 169
BfaI CTAG 3 cut(s) 24, 93, 301
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 5 cut(s) 6, 176, 179, 222, 225
BlsI GCNGC 5 cut(s) 7, 177, 180, 223, 226
Bme1390I CCNGG 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 216
BseXI GCAGC 3 cut(s) 162, 208, 236
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 130
Bsp119I TTCGAA 1 cut(s) 239
Bsp143I GATC 2 cut(s) 44, 78
BspACI CCGC 2 cut(s) 128, 178
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 44, 78
Bst2UI CCWGG 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 47, 81
BstMBI GATC 2 cut(s) 44, 78
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 162, 208, 236
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsCI GGATG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 39
CfoI GCGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 5, 62, 92, 227
CviKI_1 RGCY 4 cut(s) 5, 62, 92, 227
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 290
DpnI GATC 2 cut(s) 46, 80
DpnII GATC 2 cut(s) 44, 78
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 5 cut(s) 6, 176, 179, 222, 225
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 5 cut(s) 6, 176, 179, 222, 225
FspBI CTAG 3 cut(s) 24, 93, 301
GlaI GCGC 1 cut(s) 131
GluI GCNGC 5 cut(s) 6, 176, 179, 222, 225
HhaI GCGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HinfI GANTC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 4 cut(s) 40, 87, 147, 266
HpyAV CCTTC 4 cut(s) 108, 149, 258, 263
HpyCH4V TGCA 4 cut(s) 8, 68, 224, 281
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 44, 78
LpnPI CCDG 4 cut(s) 100, 154, 181, 279
Lsp1109I GCAGC 3 cut(s) 162, 208, 236
LweI GCATC 1 cut(s) 24
MaeI CTAG 3 cut(s) 24, 93, 301
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 46, 80
MboI GATC 2 cut(s) 44, 78
MboII GAAGA 1 cut(s) 135
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 44
MluCI AATT 4 cut(s) 9, 73, 115, 185
MnlI CCTC 2 cut(s) 31, 242
MseI TTAA 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 130
NdeII GATC 2 cut(s) 44, 78
NlaIII CATG 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 256
NspV TTCGAA 1 cut(s) 239
PagI TCATGA 1 cut(s) 39
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 5 cut(s) 7, 177, 180, 223, 226
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 5 cut(s) 6, 176, 179, 222, 225
Sau3AI GATC 2 cut(s) 44, 78
ScrFI CCNGG 1 cut(s) 169
SetI ASST 8 cut(s) 29, 64, 94, 100, 160, 173, 229, 274
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 239
Sse9I AATT 4 cut(s) 9, 73, 115, 185
SsiI CCGC 2 cut(s) 128, 178
SspMI CTAG 3 cut(s) 24, 93, 301
StyD4I CCNGG 1 cut(s) 167
TaqI TCGA 3 cut(s) 148, 153, 239
TasI AATT 4 cut(s) 9, 73, 115, 185
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 4 cut(s) 5, 175, 221, 224
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 28
XapI RAATTY 1 cut(s) 73
XspI CTAG 3 cut(s) 24, 93, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.