Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012956

Physical Location & Seq

Genomic Coordinates Reverse (-)

39501128 .. 39502623

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCAGCTTCAATCGCCGGAAGAACCACAATTCTGCGCGCCTTTTGCAGAGCAACAACAACAACGCCAAGGGTTTCAAGAACCACATGCCTCCCTTCCATTCGCTCCAATTCCACGCCTCGTTGCCCCACTTCACGGCTGTTGCGAAGAGAATTGAGCTCGCTTCAACCCCTCCACAGCTCCATTGCTGCTGCTTGCCTCGTCTCCAAGCTCCCAAATCTAGCTGCCTCCTCCTCTGAAGGTAGATTTGTGAACTATCTCAGTCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.68

Weight (kDa)

11.59

Isoelectric Point (pI)

73.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27775 AT2G27775
fragaria_vesca	FvH4_3g24190
malus_domestica	MD03G1135500.v1.1 MD11G1158100.v1.1
prunus_persica	Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1
pyrus_communis	pycom03g09150 pycom11g12840
rosa_chinensis	RchiOBHm_Chr5g0043301
rosa_roxburghii	Rroxscaffold_1G00037520
rosa_samantha	Rh5AG290600 Rh5BG297200 Rh5CG327000 Rh5DG306800
rosa_wichuraiana	Rw5G026890 Rw5G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	12, 78, 167
AluBI	AGCT	5 cut(s)	8, 159, 180, 211, 224
AluI	AGCT	5 cut(s)	8, 159, 180, 211, 224
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	188, 191, 224
AspLEI	GCGC	2 cut(s)	39, 41
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	175, 178, 211
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	221, 271
BisI	GCNGC	3 cut(s)	189, 192, 225
BlsI	GCNGC	3 cut(s)	190, 193, 226
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	183
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	220, 223
BseXI	GCAGC	3 cut(s)	175, 178, 211
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	68
BssHII	GCGCGC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	39, 161, 196
BstDEI	CTNAG	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	39, 41
BstMAI	GTCTC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 45
BstNSI	RCATGY	1 cut(s)	90
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	175, 178, 211
Cac8I	GCNNGC	3 cut(s)	39, 161, 196
CfoI	GCGC	2 cut(s)	39, 41
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	6 cut(s)	8, 139, 159, 180, 211, 224
CviKI_1	RGCY	6 cut(s)	8, 139, 159, 180, 211, 224
DdeI	CTNAG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	1 cut(s)	90
FaiI	YATR	1 cut(s)	88
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	189, 192, 225
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	189, 192, 225
FspBI	CTAG	2 cut(s)	221, 271
GlaI	GCGC	2 cut(s)	38, 40
GluI	GCNGC	3 cut(s)	189, 192, 225
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	2 cut(s)	39, 41
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	37, 39
HinP1I	GCGC	2 cut(s)	37, 39
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	105, 233
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 45
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	2 cut(s)	37, 39
LmnI	GCTCC	3 cut(s)	110, 185, 216
LpnPI	CCDG	1 cut(s)	31
Lsp1109I	GCAGC	3 cut(s)	175, 178, 211
MaeI	CTAG	2 cut(s)	221, 271
MboII	GAAGA	2 cut(s)	33, 159
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	3 cut(s)	30, 109, 152
MnlI	CCTC	7 cut(s)	101, 129, 182, 209, 238, 241, 244
MspI	CCGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	14, 45
NlaIII	CATG	1 cut(s)	90
NspI	RCATGY	1 cut(s)	90
PauI	GCGCGC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	190, 193, 226
Psp124BI	GAGCTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	161
SatI	GCNGC	3 cut(s)	189, 192, 225
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	6 cut(s)	10, 161, 182, 213, 226, 244
Sse9I	AATT	3 cut(s)	30, 109, 152
SspMI	CTAG	2 cut(s)	221, 271
SstI	GAGCTC	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	68
TasI	AATT	3 cut(s)	30, 109, 152
TseI	GCWGC	3 cut(s)	188, 191, 224
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	2 cut(s)	221, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.