Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012956

Physical Location & Seq

Genomic Coordinates Reverse (-)

39213658 .. 39214760

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCAGCTTCAATCGCCGGAAGAACCACAATTCTGCGCGCCTTTTGCAGAGCAGCAGCAGCAACAACAACAACAACGCCAAGAGTTTCAAGAACCACATGCCTCCCTTCCATTCGCTCCAATTCCACGCCTCGTTGCCCCACTTCACGGCTGTTGCGAAGAGAATTGAGCTCGCTTCAACCCCTCCACAGCTCCATTGCTGCTGCTTGCCTCGTCTCCAAGCTCCCAAATCTAGCTGCCTCCTCCTCTGAAGGTAGATTTGTGAACTATCTCAGTCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

9.99

Weight (kDa)

11.59

Isoelectric Point (pI)

70.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27775 AT2G27775
fragaria_vesca	FvH4_3g24190
malus_domestica	MD03G1135500.v1.1 MD11G1158100.v1.1
prunus_persica	Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1
pyrus_communis	pycom03g09150 pycom11g12840
rosa_chinensis	RchiOBHm_Chr5g0043301
rosa_roxburghii	Rroxscaffold_1G00037520
rosa_samantha	Rh5AG290600 Rh5BG297200 Rh5CG327000 Rh5DG306800
rosa_wichuraiana	Rw5G026890 Rw5G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	12, 90, 179
AluBI	AGCT	5 cut(s)	8, 171, 192, 223, 236
AluI	AGCT	5 cut(s)	8, 171, 192, 223, 236
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	220
ApeKI	GCWGC	6 cut(s)	53, 56, 59, 200, 203, 236
AspLEI	GCGC	2 cut(s)	39, 41
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	6 cut(s)	65, 68, 71, 187, 190, 223
BceAI	ACGGC	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	233, 283
BisI	GCNGC	6 cut(s)	54, 57, 60, 201, 204, 237
BlsI	GCNGC	6 cut(s)	55, 58, 61, 202, 205, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	195
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	232, 235
BseXI	GCAGC	6 cut(s)	65, 68, 71, 187, 190, 223
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	195
BssHII	GCGCGC	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	154
BstC8I	GCNNGC	3 cut(s)	39, 173, 208
BstDEI	CTNAG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	39, 41
BstMAI	GTCTC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 45, 59
BstNSI	RCATGY	1 cut(s)	102
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	6 cut(s)	65, 68, 71, 187, 190, 223
Cac8I	GCNNGC	3 cut(s)	39, 173, 208
CfoI	GCGC	2 cut(s)	39, 41
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	6 cut(s)	8, 151, 171, 192, 223, 236
CviKI_1	RGCY	6 cut(s)	8, 151, 171, 192, 223, 236
DdeI	CTNAG	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	1 cut(s)	102
FaiI	YATR	1 cut(s)	100
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	6 cut(s)	54, 57, 60, 201, 204, 237
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	6 cut(s)	54, 57, 60, 201, 204, 237
FspBI	CTAG	2 cut(s)	233, 283
GlaI	GCGC	2 cut(s)	38, 40
GluI	GCNGC	6 cut(s)	54, 57, 60, 201, 204, 237
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	2 cut(s)	39, 41
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	2 cut(s)	37, 39
HinP1I	GCGC	2 cut(s)	37, 39
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	117, 245
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 45, 59
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	2 cut(s)	37, 39
LmnI	GCTCC	3 cut(s)	122, 197, 228
LpnPI	CCDG	1 cut(s)	31
Lsp1109I	GCAGC	6 cut(s)	65, 68, 71, 187, 190, 223
MaeI	CTAG	2 cut(s)	233, 283
MboII	GAAGA	2 cut(s)	33, 171
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	30, 121, 164
MnlI	CCTC	7 cut(s)	113, 141, 194, 221, 250, 253, 256
MspI	CCGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	14, 45, 59
NlaIII	CATG	1 cut(s)	102
NspI	RCATGY	1 cut(s)	102
PauI	GCGCGC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PkrI	GCNGC	6 cut(s)	55, 58, 61, 202, 205, 238
Psp124BI	GAGCTC	1 cut(s)	173
PteI	GCGCGC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	173
SatI	GCNGC	6 cut(s)	54, 57, 60, 201, 204, 237
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	6 cut(s)	10, 173, 194, 225, 238, 256
Sse9I	AATT	3 cut(s)	30, 121, 164
SspMI	CTAG	2 cut(s)	233, 283
SstI	GAGCTC	1 cut(s)	173
TasI	AATT	3 cut(s)	30, 121, 164
TseI	GCWGC	6 cut(s)	53, 56, 59, 200, 203, 236
XceI	RCATGY	1 cut(s)	102
XspI	CTAG	2 cut(s)	233, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.