Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012956

Physical Location & Seq

Genomic Coordinates Forward (+)

11857097 .. 11858448

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTAGTCGAAAGTTCAGTGAAATGGGGGCTTTACAGAGGTTTTAGGGTTTGGAATCGAAATACACAGACGAACAGAGATAAAAAAATGTCAGCTTCGATTGCTGGAAGATCGACAATTCTGCGCGCGTTTTTCCGAGCAGCGACGTCAACAGAAAGAACAAGAATTTCAGCAGCGCCATGCCCTTCGATTCCGTCCAATTTCATGGCTCGTCGCTCCCCTTCCTCAAGGCTGTTGCGGCGAGAATTGAGCTCTCTTCAACCGCTCCACACTGCCATTGCGTCCGCTTGCCTTATCTCCAAGCTCCCCGACTTGGCCAACTCCTCCGAAGGTAGATTTGTGAATTACATCAGTCCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

11.58

Isoelectric Point (pI)

69.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27775 AT2G27775
fragaria_vesca	FvH4_3g24190
malus_domestica	MD03G1135500.v1.1 MD11G1158100.v1.1
prunus_persica	Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1
pyrus_communis	pycom03g09150 pycom11g12840
rosa_chinensis	RchiOBHm_Chr5g0043301
rosa_roxburghii	Rroxscaffold_1G00037520
rosa_samantha	Rh5AG290600 Rh5BG297200 Rh5CG327000 Rh5DG306800
rosa_wichuraiana	Rw5G026890 Rw5G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	149
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	2 cut(s)	126, 128
AciI	CCGC	3 cut(s)	238, 263, 285
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	3 cut(s)	95, 252, 304
AluI	AGCT	3 cut(s)	95, 252, 304
Alw21I	GWGCWC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	140, 173
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	126, 128, 178
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	152, 185
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BfaI	CTAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	3 cut(s)	141, 174, 239
BlsI	GCNGC	3 cut(s)	142, 175, 240
BpuEI	CTTGAG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	276
BsePI	GCGCGC	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	152, 185
Bsh1236I	CGCG	2 cut(s)	126, 128
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	3 cut(s)	238, 263, 285
BspANI	GGCC	1 cut(s)	317
BspFNI	CGCG	2 cut(s)	126, 128
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	276
BssHII	GCGCGC	1 cut(s)	124
BssMI	GATC	1 cut(s)	110
BssNI	GRCGYC	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	126, 289
BstFNI	CGCG	2 cut(s)	126, 128
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	3 cut(s)	126, 128, 178
BstKTI	GATC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 238
BstUI	CGCG	2 cut(s)	126, 128
BstV1I	GCAGC	2 cut(s)	152, 185
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	24, 270
Cac8I	GCNNGC	2 cut(s)	126, 289
CfoI	GCGC	3 cut(s)	126, 128, 178
CseI	GACGC	1 cut(s)	270
CviAII	CATG	2 cut(s)	180, 205
CviJI	RGCY	7 cut(s)	31, 95, 209, 232, 252, 304, 317
CviKI_1	RGCY	7 cut(s)	31, 95, 209, 232, 252, 304, 317
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	2 cut(s)	183, 208
FaiI	YATR	2 cut(s)	181, 206
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	2 cut(s)	179, 204
Fnu4HI	GCNGC	3 cut(s)	141, 174, 239
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	141, 174, 239
FspBI	CTAG	1 cut(s)	361
GlaI	GCGC	3 cut(s)	125, 127, 177
GluI	GCNGC	3 cut(s)	141, 174, 239
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	317
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	3 cut(s)	126, 128, 178
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	183, 208
Hin6I	GCGC	3 cut(s)	124, 126, 176
HinP1I	GCGC	3 cut(s)	124, 126, 176
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	55, 190
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	137, 328
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	2 cut(s)	148, 216
HpyAV	CCTTC	3 cut(s)	195, 231, 323
HpyCH4IV	ACGT	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 238
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	183, 208
HspAI	GCGC	3 cut(s)	124, 126, 176
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	3 cut(s)	221, 270, 309
LpnPI	CCDG	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	152, 185
MaeI	CTAG	1 cut(s)	361
MaeII	ACGT	1 cut(s)	146
MalI	GATC	1 cut(s)	112
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	1 cut(s)	110
MboII	GAAGA	2 cut(s)	120, 248
MhlI	GDGCHC	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	5 cut(s)	117, 165, 199, 245, 343
MluNI	TGGCCA	1 cut(s)	317
MnlI	CCTC	3 cut(s)	32, 235, 334
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	317
MvnI	CGCG	2 cut(s)	126, 128
MwoI	GCNNNNNNNGC	2 cut(s)	101, 238
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	183, 208
PauI	GCGCGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	55, 190
PkrI	GCNGC	3 cut(s)	142, 175, 240
Psp124BI	GAGCTC	1 cut(s)	254
PteI	GCGCGC	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	254
SatI	GCNGC	3 cut(s)	141, 174, 239
Sau3AI	GATC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	6 cut(s)	43, 97, 149, 254, 306, 334
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	5 cut(s)	117, 165, 199, 245, 343
SsiI	CCGC	3 cut(s)	238, 263, 285
SspMI	CTAG	1 cut(s)	361
SstI	GAGCTC	1 cut(s)	254
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	5 cut(s)	9, 58, 98, 113, 188
TasI	AATT	5 cut(s)	117, 165, 199, 245, 343
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	55, 190
TscAI	CASTG	2 cut(s)	24, 277
TseI	GCWGC	2 cut(s)	140, 173
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	2 cut(s)	24, 277
XapI	RAATTY	1 cut(s)	165
XspI	CTAG	1 cut(s)	361
ZraI	GACGTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.