Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012956

Physical Location & Seq

Genomic Coordinates Reverse (-)

39827427 .. 39835574

Gene Structure 8148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCAGCTTCAATCGCCGGAAGAACCACAATTCTGCGCGCCTTTTGCAGAGCAGCAACAACAACAACGCCAAGAATTTCAAGAACCACATGCCTCCCTTCCATTCGCTCCAATTCCACGCCTCGTTGCCCCACTTTACGGCTGTTGCGAAGAGAATTGAGCTCGCTTCAACCCCTCCACAGCTCCATTGCTGCTGCTTGCCTCGTCTCCAAGCTCCCAAATCTAGCTGCCTCCTCCTCTGAAGCATTTAAGGCCTCAGGTGACAATAGCATGGGCAATGATGTTGTGCCACCAATGATGTTGTGCCACCGATTTACATGCGTCAATCTGATGCAAGATGAAAGCTTCAGTCAAATTCCGGGAGGACCAGAAGCCATTCCTGAAGGCCAAAGTATAGTTATCATTGTTGAGGGTTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

14.86

Weight (kDa)

8.84

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27775 AT2G27775
fragaria_vesca	FvH4_3g24190
malus_domestica	MD03G1135500.v1.1 MD11G1158100.v1.1
prunus_persica	Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1
pyrus_communis	pycom03g09150 pycom11g12840
rosa_chinensis	RchiOBHm_Chr5g0043301
rosa_roxburghii	Rroxscaffold_1G00037520
rosa_samantha	Rh5AG290600 Rh5BG297200 Rh5CG327000 Rh5DG306800
rosa_wichuraiana	Rw5G026890 Rw5G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	75, 354
AcuI	CTGAAG	3 cut(s)	261, 331, 402
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	12, 81, 170
AluBI	AGCT	6 cut(s)	8, 162, 183, 214, 227, 345
AluI	AGCT	6 cut(s)	8, 162, 183, 214, 227, 345
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	252, 385
ApeKI	GCWGC	4 cut(s)	53, 191, 194, 227
ApoI	RAATTY	2 cut(s)	75, 354
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	2 cut(s)	39, 41
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	65, 178, 181, 214
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	4 cut(s)	54, 192, 195, 228
BlsI	GCNGC	4 cut(s)	55, 193, 196, 229
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse21I	CCTNAGG	1 cut(s)	256
Bse3DI	GCAATG	2 cut(s)	186, 283
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	2 cut(s)	186, 283
BseMII	CTCAG	1 cut(s)	270
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	223, 226
BseXI	GCAGC	4 cut(s)	65, 178, 181, 214
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	254, 387
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	18, 359
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	254, 387
Bsp1286I	GDGCHC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	254, 387
BspCNI	CTCAG	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	186, 283
BssHII	GCGCGC	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	39, 164, 199
BstDEI	CTNAG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	39, 41
BstMAI	GTCTC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 45, 251
BstNSI	RCATGY	2 cut(s)	93, 321
BstSCI	CCNGG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	65, 178, 181, 214
Bsu36I	CCTNAGG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	254, 387
Cac8I	GCNNGC	3 cut(s)	39, 164, 199
CfoI	GCGC	2 cut(s)	39, 41
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	310
CviAII	CATG	3 cut(s)	90, 271, 318
DdeI	CTNAG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	3 cut(s)	261, 331, 402
Eco81I	CCTNAGG	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	3 cut(s)	93, 274, 321
FaiI	YATR	4 cut(s)	91, 272, 319, 395
FatI	CATG	3 cut(s)	89, 270, 317
Fnu4HI	GCNGC	4 cut(s)	54, 192, 195, 228
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	4 cut(s)	54, 192, 195, 228
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	2 cut(s)	38, 40
GluI	GCNGC	4 cut(s)	54, 192, 195, 228
HaeIII	GGCC	2 cut(s)	254, 387
HapII	CCGG	2 cut(s)	18, 359
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	39, 41
Hin1II	CATG	3 cut(s)	93, 274, 321
Hin6I	GCGC	2 cut(s)	37, 39
HinP1I	GCGC	2 cut(s)	37, 39
HindIII	AAGCTT	1 cut(s)	343
HpaII	CCGG	2 cut(s)	18, 359
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	241, 330
Hpy188III	TCNNGA	2 cut(s)	81, 380
HpyAV	CCTTC	2 cut(s)	108, 377
HpyCH4V	TGCA	2 cut(s)	48, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 45, 251
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	3 cut(s)	93, 274, 321
HspAI	GCGC	2 cut(s)	37, 39
LmnI	GCTCC	3 cut(s)	113, 188, 219
LpnPI	CCDG	5 cut(s)	31, 243, 372, 381, 393
Lsp1109I	GCAGC	4 cut(s)	65, 178, 181, 214
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	260
MboII	GAAGA	2 cut(s)	33, 162
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	5 cut(s)	30, 75, 112, 155, 354
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	1 cut(s)	249
MspI	CCGG	2 cut(s)	18, 359
MspR9I	CCNGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	14, 45, 251
NciI	CCSGG	1 cut(s)	360
NlaIII	CATG	3 cut(s)	93, 274, 321
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	2 cut(s)	93, 321
PauI	GCGCGC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	375
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	55, 193, 196, 229
Psp124BI	GAGCTC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	365
PteI	GCGCGC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	54, 192, 195, 228
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	7 cut(s)	10, 164, 185, 216, 229, 262, 347
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	1 cut(s)	365
Sse9I	AATT	5 cut(s)	30, 75, 112, 155, 354
SseBI	AGGCCT	1 cut(s)	254
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	358
TasI	AATT	5 cut(s)	30, 75, 112, 155, 354
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	4 cut(s)	53, 191, 194, 227
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	75, 354
XceI	RCATGY	2 cut(s)	93, 321
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.