Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012956

Physical Location & Seq

Genomic Coordinates Forward (+)

7601447 .. 7602818

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCTCCCTTTTATTATCTTTCACCCAACGTCCGTCACTCCTCGTCTCTGAAATTGGGGTTTTACAGAGGTTTTAGGGTTTCGAAACGAAACACACAGACGAACAGAGAACAAAAATGTCAGCTTCGATCGCCGGAACGATCGACAATTCTGCGCGCGTTTTGCCGAGCAGCAACATCAACAACAAGAACAAGAATTTCAGCAGCGCCATGCCCTTCGATTCCGTCCAATTTCATGGCTCGTCGCTCCTCTTCCTTAAGGCTGTTGCGCCGAGAATTGAGCTCTCTTCAACCTCTCCACAATGCAATTGCGTCCGCTTGCCTAATATCCAAGCTTCCGGCCCTGGCCACCTCCTCCGAAGGCAGATTTGTGAACTATATCAGTCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.62

Weight (kDa)

11.52

Isoelectric Point (pI)

88.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27775 AT2G27775
fragaria_vesca	FvH4_3g24190
malus_domestica	MD03G1135500.v1.1 MD11G1158100.v1.1
prunus_persica	Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1
pyrus_communis	pycom03g09150 pycom11g12840
rosa_chinensis	RchiOBHm_Chr5g0043301
rosa_roxburghii	Rroxscaffold_1G00037520
rosa_samantha	Rh5AG290600 Rh5BG297200 Rh5CG327000 Rh5DG306800
rosa_wichuraiana	Rw5G026890 Rw5G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	156, 158
AciI	CCGC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	195
AflII	CTTAAG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	124, 282, 334
AluI	AGCT	3 cut(s)	124, 282, 334
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	51
AoxI	GGCC	2 cut(s)	339, 345
ApeKI	GCWGC	2 cut(s)	170, 203
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	4 cut(s)	156, 158, 208, 270
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	15
AsuII	TTCGAA	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	182, 215
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	391
BfoI	RGCGCY	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	256
BisI	GCNGC	2 cut(s)	171, 204
BlsI	GCNGC	2 cut(s)	172, 205
Bme1390I	CCNGG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	344
Bpu14I	TTCGAA	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	342
BsePI	GCGCGC	1 cut(s)	154
BseRI	GAGGAG	3 cut(s)	31, 238, 343
BseXI	GCAGC	2 cut(s)	182, 215
Bsh1236I	CGCG	2 cut(s)	156, 158
Bsh1285I	CGRYCG	2 cut(s)	131, 143
BshFI	GGCC	2 cut(s)	341, 347
BsiEI	CGRYCG	2 cut(s)	131, 143
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	134, 338
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	341, 347
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	128, 140
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	341, 347
BspFNI	CGCG	2 cut(s)	156, 158
BspT104I	TTCGAA	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	342
BssHII	GCGCGC	1 cut(s)	154
BssMI	GATC	2 cut(s)	128, 140
Bst2UI	CCWGG	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	256, 291
BstAFI	CTTAAG	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	156, 319
BstFNI	CGCG	2 cut(s)	156, 158
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	4 cut(s)	156, 158, 208, 270
BstKTI	GATC	2 cut(s)	131, 143
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	128, 140
BstMCI	CGRYCG	2 cut(s)	131, 143
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 162
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstUI	CGCG	2 cut(s)	156, 158
BstV1I	GCAGC	2 cut(s)	182, 215
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	341, 347
Cac8I	GCNNGC	2 cut(s)	156, 319
CfoI	GCGC	4 cut(s)	156, 158, 208, 270
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	1 cut(s)	300
CviAII	CATG	2 cut(s)	210, 235
CviJI	RGCY	7 cut(s)	124, 239, 262, 282, 334, 341, 347
CviKI_1	RGCY	7 cut(s)	124, 239, 262, 282, 334, 341, 347
DpnI	GATC	2 cut(s)	130, 142
DpnII	GATC	2 cut(s)	128, 140
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	256, 291
EarI	CTCTTC	2 cut(s)	256, 291
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	213, 238
FaiI	YATR	3 cut(s)	211, 236, 378
FatI	CATG	2 cut(s)	209, 234
Fnu4HI	GCNGC	2 cut(s)	171, 204
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	171, 204
FspBI	CTAG	1 cut(s)	391
GlaI	GCGC	4 cut(s)	155, 157, 207, 269
GluI	GCNGC	2 cut(s)	171, 204
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	341, 347
HapII	CCGG	2 cut(s)	134, 338
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	4 cut(s)	156, 158, 208, 270
Hin1II	CATG	2 cut(s)	213, 238
Hin6I	GCGC	4 cut(s)	154, 156, 206, 268
HinP1I	GCGC	4 cut(s)	154, 156, 206, 268
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	134, 338
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	51, 358
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	225, 353
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 162
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	213, 238
HspAI	GCGC	4 cut(s)	154, 156, 206, 268
Kzo9I	GATC	2 cut(s)	128, 140
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	4 cut(s)	147, 329, 351, 356
Lsp1109I	GCAGC	2 cut(s)	182, 215
MaeI	CTAG	1 cut(s)	391
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	130, 142
MboI	GATC	2 cut(s)	128, 140
MboII	GAAGA	2 cut(s)	243, 278
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	284
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	6 cut(s)	53, 147, 195, 229, 275, 306
MluNI	TGGCCA	1 cut(s)	347
MnlI	CCTC	7 cut(s)	15, 52, 62, 259, 303, 361, 364
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	256
MspI	CCGG	2 cut(s)	134, 338
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	2 cut(s)	156, 158
MwoI	GCNNNNNNNGC	2 cut(s)	130, 162
NdeII	GATC	2 cut(s)	128, 140
NlaIII	CATG	2 cut(s)	213, 238
NmeAIII	GCCGAG	2 cut(s)	191, 296
NmuCI	GTSAC	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	83
PauI	GCGCGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	172, 205
Ple19I	CGATCG	2 cut(s)	131, 143
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	340
PteI	GCGCGC	1 cut(s)	154
PvuI	CGATCG	2 cut(s)	131, 143
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	171, 204
Sau3AI	GATC	2 cut(s)	128, 140
Sau96I	GGNCC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	7 cut(s)	33, 73, 126, 284, 295, 336, 353
SfuI	TTCGAA	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	6 cut(s)	53, 147, 195, 229, 275, 306
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	391
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	4 cut(s)	83, 127, 143, 218
TasI	AATT	6 cut(s)	53, 147, 195, 229, 275, 306
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	170, 203
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	223
TspGWI	ACGGA	2 cut(s)	23, 213
Vha464I	CTTAAG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.