Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012956

Physical Location & Seq

Genomic Coordinates Reverse (-)

17196991 .. 17198647

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCAGCTTCAGTCGCCGGAAGAGCCACAATTCTGCGCGCGTTTTGCAGAGCAGCAACAACAACGCCGCCAAGAATTTCAAGAACCACATGCCTCCCTTCCATTCGCTCCAATTCGATGCCTCGTTGTCCCACCTTACGGGTGTTGCGAAGGGAATTGAGCTCGCTTCAACCACTCCACAGCTCCATTGCTGCTGCTTGCCTTGTTTCTAAGCTCCCAAATTTAGCTGCCTCCTCCTCTGAAGGTAGATTTGTGAACTATCTCAGTCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

9.76

Weight (kDa)

11.59

Isoelectric Point (pI)

79.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27775 AT2G27775
fragaria_vesca	FvH4_3g24190
malus_domestica	MD03G1135500.v1.1 MD11G1158100.v1.1
prunus_persica	Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1
pyrus_communis	pycom03g09150 pycom11g12840
rosa_chinensis	RchiOBHm_Chr5g0043301
rosa_roxburghii	Rroxscaffold_1G00037520
rosa_samantha	Rh5AG290600 Rh5BG297200 Rh5CG327000 Rh5DG306800
rosa_wichuraiana	Rw5G026890 Rw5G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	39, 41
AciI	CCGC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	75, 220
AcuI	CTGAAG	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	81, 170
AluBI	AGCT	5 cut(s)	8, 162, 183, 214, 227
AluI	AGCT	5 cut(s)	8, 162, 183, 214, 227
Alw21I	GWGCWC	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	53, 191, 194, 227
ApoI	RAATTY	2 cut(s)	75, 220
AspLEI	GCGC	2 cut(s)	39, 41
BanII	GRGCYC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	65, 178, 181, 214
BfaI	CTAG	1 cut(s)	274
BisI	GCNGC	5 cut(s)	54, 68, 192, 195, 228
BlsI	GCNGC	5 cut(s)	55, 69, 193, 196, 229
BmsI	GCATC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	186
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	223, 226
BseXI	GCAGC	4 cut(s)	65, 178, 181, 214
Bsh1236I	CGCG	2 cut(s)	39, 41
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	2 cut(s)	39, 41
BspQI	GCTCTTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	186
BssHII	GCGCGC	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	39, 164, 199
BstDEI	CTNAG	2 cut(s)	210, 263
BstFNI	CGCG	2 cut(s)	39, 41
BstHHI	GCGC	2 cut(s)	39, 41
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 23, 45
BstNSI	RCATGY	1 cut(s)	93
BstUI	CGCG	2 cut(s)	39, 41
BstV1I	GCAGC	4 cut(s)	65, 178, 181, 214
Cac8I	GCNNGC	3 cut(s)	39, 164, 199
CfoI	GCGC	2 cut(s)	39, 41
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	6 cut(s)	8, 26, 162, 183, 214, 227
CviKI_1	RGCY	6 cut(s)	8, 26, 162, 183, 214, 227
DdeI	CTNAG	2 cut(s)	210, 263
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	1 cut(s)	93
FaiI	YATR	1 cut(s)	91
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	1 cut(s)	89
Fnu4HI	GCNGC	5 cut(s)	54, 68, 192, 195, 228
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	5 cut(s)	54, 68, 192, 195, 228
FspBI	CTAG	1 cut(s)	274
GlaI	GCGC	2 cut(s)	38, 40
GluI	GCNGC	5 cut(s)	54, 68, 192, 195, 228
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	2 cut(s)	39, 41
Hin1II	CATG	1 cut(s)	93
Hin6I	GCGC	2 cut(s)	37, 39
HinP1I	GCGC	2 cut(s)	37, 39
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	108, 144, 236
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 23, 45
HpyF3I	CTNAG	2 cut(s)	210, 263
Hsp92II	CATG	1 cut(s)	93
HspAI	GCGC	2 cut(s)	37, 39
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	3 cut(s)	113, 188, 219
LpnPI	CCDG	1 cut(s)	31
Lsp1109I	GCAGC	4 cut(s)	65, 178, 181, 214
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	274
MboII	GAAGA	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	5 cut(s)	30, 75, 112, 155, 220
MnlI	CCTC	5 cut(s)	104, 132, 241, 244, 247
MspI	CCGG	1 cut(s)	18
MvnI	CGCG	2 cut(s)	39, 41
MwoI	GCNNNNNNNGC	3 cut(s)	14, 23, 45
NlaIII	CATG	1 cut(s)	93
NspI	RCATGY	1 cut(s)	93
PauI	GCGCGC	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	55, 69, 193, 196, 229
Psp124BI	GAGCTC	1 cut(s)	164
PteI	GCGCGC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	16
SatI	GCNGC	5 cut(s)	54, 68, 192, 195, 228
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	7 cut(s)	10, 137, 164, 185, 216, 229, 247
SfaNI	GCATC	1 cut(s)	108
Sse9I	AATT	5 cut(s)	30, 75, 112, 155, 220
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	274
SstI	GAGCTC	1 cut(s)	164
TaqI	TCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	30, 75, 112, 155, 220
TauI	GCSGC	1 cut(s)	70
TseI	GCWGC	4 cut(s)	53, 191, 194, 227
XapI	RAATTY	2 cut(s)	75, 220
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.