Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012956

Physical Location & Seq

Genomic Coordinates Reverse (-)

38238856 .. 38240475

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCAGCTTCAATCGCCGGAAGAACCACAATTCTGCGCGCCTTTTGCAGAGCAGCAACAACAACAACAACAACAACAACGCCAAGAATTTCAAGAACCACATGCCTCCCTTCCATTCGCTCCAATTCCACGCCTCGTTGCCCCACTTCACGGCTGTTGCGAAGAGAATTGAGCTCGCTTCAACCCCTCCACAGCTCCATTGCTGCTGCTTGCCTCGTCTCCAAGCTCCCAAATCTAGCTGCCTCCTCCTCTGAAGGTAGATTTGTGAACTATCTCAGTCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.17

Weight (kDa)

11.59

Isoelectric Point (pI)

69.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27775 AT2G27775
fragaria_vesca	FvH4_3g24190
malus_domestica	MD03G1135500.v1.1 MD11G1158100.v1.1
prunus_persica	Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1 Prupe.6G119900_v2.0.a1
pyrus_communis	pycom03g09150 pycom11g12840
rosa_chinensis	RchiOBHm_Chr5g0043301
rosa_roxburghii	Rroxscaffold_1G00037520
rosa_samantha	Rh5AG290600 Rh5BG297200 Rh5CG327000 Rh5DG306800
rosa_wichuraiana	Rw5G026890 Rw5G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	12, 93, 182
AluBI	AGCT	5 cut(s)	8, 174, 195, 226, 239
AluI	AGCT	5 cut(s)	8, 174, 195, 226, 239
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	53, 203, 206, 239
ApoI	RAATTY	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	39, 41
BanII	GRGCYC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	4 cut(s)	65, 190, 193, 226
BceAI	ACGGC	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	236, 286
BisI	GCNGC	4 cut(s)	54, 204, 207, 240
BlsI	GCNGC	4 cut(s)	55, 205, 208, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	198
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	235, 238
BseXI	GCAGC	4 cut(s)	65, 190, 193, 226
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	198
BssHII	GCGCGC	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	39, 176, 211
BstDEI	CTNAG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	39, 41
BstMAI	GTCTC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 45
BstNSI	RCATGY	1 cut(s)	105
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	65, 190, 193, 226
Cac8I	GCNNGC	3 cut(s)	39, 176, 211
CfoI	GCGC	2 cut(s)	39, 41
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	6 cut(s)	8, 154, 174, 195, 226, 239
CviKI_1	RGCY	6 cut(s)	8, 154, 174, 195, 226, 239
DdeI	CTNAG	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	1 cut(s)	105
FaiI	YATR	1 cut(s)	103
FatI	CATG	1 cut(s)	101
Fnu4HI	GCNGC	4 cut(s)	54, 204, 207, 240
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	54, 204, 207, 240
FspBI	CTAG	2 cut(s)	236, 286
GlaI	GCGC	2 cut(s)	38, 40
GluI	GCNGC	4 cut(s)	54, 204, 207, 240
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	2 cut(s)	39, 41
Hin1II	CATG	1 cut(s)	105
Hin6I	GCGC	2 cut(s)	37, 39
HinP1I	GCGC	2 cut(s)	37, 39
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	120, 248
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 45
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	105
HspAI	GCGC	2 cut(s)	37, 39
LmnI	GCTCC	3 cut(s)	125, 200, 231
LpnPI	CCDG	1 cut(s)	31
Lsp1109I	GCAGC	4 cut(s)	65, 190, 193, 226
MaeI	CTAG	2 cut(s)	236, 286
MboII	GAAGA	2 cut(s)	33, 174
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	4 cut(s)	30, 87, 124, 167
MnlI	CCTC	7 cut(s)	116, 144, 197, 224, 253, 256, 259
MspI	CCGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	14, 45
NlaIII	CATG	1 cut(s)	105
NspI	RCATGY	1 cut(s)	105
PauI	GCGCGC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	55, 205, 208, 241
Psp124BI	GAGCTC	1 cut(s)	176
PteI	GCGCGC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	176
SatI	GCNGC	4 cut(s)	54, 204, 207, 240
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	10, 176, 197, 228, 241, 259
Sse9I	AATT	4 cut(s)	30, 87, 124, 167
SspMI	CTAG	2 cut(s)	236, 286
SstI	GAGCTC	1 cut(s)	176
TasI	AATT	4 cut(s)	30, 87, 124, 167
TseI	GCWGC	4 cut(s)	53, 203, 206, 239
XapI	RAATTY	1 cut(s)	87
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	2 cut(s)	236, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.