coiled-coil domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27900 AT2G27900 |
| fragaria_vesca | FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 |
| malus_domestica | MD03G1129700.v1.1 MD11G1151500.v1.1 |
| prunus_persica | Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 |
| pyrus_communis | pycom11g12360 |
| rosa_chinensis | RchiOBHm_Chr5g0056331 |
| rosa_laevigata | RLG00000035088 |
| rosa_multiflora | Rmu_sc0000317.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00023990 Rroxscaffold_1G00027590 |
| rosa_rugosa | Rorug05G0298900 Rorug05G0299000 Rorug05G0299000 |
| rosa_samantha | Rh5AG369700 Rh5BG380700 Rh5CG404100 Rh5DG393900 |
| rosa_wichuraiana | Rw0G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1834 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 559, 1358 |
| AccI | GTMKAC | 2 cut(s) | 1144, 1645 |
| AccII | CGCG | 2 cut(s) | 2345, 3334 |
| AccIII | TCCGGA | 1 cut(s) | 3259 |
| AclWI | GGATC | 3 cut(s) | 428, 1961, 2314 |
| AcsI | RAATTY | 9 cut(s) | 185, 592, 658, 971, 1284, 1477, 2381, 2963, 3295 |
| AcuI | CTGAAG | 4 cut(s) | 1425, 1503, 1544, 3113 |
| AcvI | CACGTG | 1 cut(s) | 269 |
| AcyI | GRCGYC | 1 cut(s) | 1448 |
| AdeI | CACNNNGTG | 2 cut(s) | 1093, 3160 |
| AfaI | GTAC | 9 cut(s) | 519, 702, 1393, 1517, 2278, 2342, 2817, 3094, 3215 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 559, 1191, 1358, 1696, 1816 |
| AflIII | ACRYGT | 2 cut(s) | 2240, 3106 |
| AjiI | CACGTC | 1 cut(s) | 3107 |
| AjnI | CCWGG | 3 cut(s) | 966, 1624, 1809 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2778, 2810 |
| AleI | CACNNNNGTG | 1 cut(s) | 2530 |
| Alw21I | GWGCWC | 2 cut(s) | 110, 2835 |
| AlwI | GGATC | 3 cut(s) | 428, 1961, 2314 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 284, 1847 |
| Ama87I | CYCGRG | 2 cut(s) | 2718, 2957 |
| Aor13HI | TCCGGA | 1 cut(s) | 3259 |
| ApoI | RAATTY | 9 cut(s) | 185, 592, 658, 971, 1284, 1477, 2381, 2963, 3295 |
| AseI | ATTAAT | 1 cut(s) | 1860 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1557, 2018, 2187, 3237 |
| AspLEI | GCGC | 1 cut(s) | 1798 |
| AspS9I | GGNCC | 3 cut(s) | 997, 1807, 3013 |
| AsuC2I | CCSGG | 1 cut(s) | 1374 |
| AsuHPI | GGTGA | 9 cut(s) | 191, 542, 592, 1034, 1287, 1500, 1830, 2559, 3304 |
| AvaI | CYCGRG | 2 cut(s) | 2718, 2957 |
| AvaII | GGWCC | 3 cut(s) | 997, 1807, 3013 |
| AxyI | CCTNAGG | 1 cut(s) | 1918 |
| BanII | GRGCYC | 3 cut(s) | 110, 1891, 3256 |
| BauI | CACGAG | 1 cut(s) | 294 |
| BbrPI | CACGTG | 1 cut(s) | 269 |
| BbsI | GAAGAC | 6 cut(s) | 658, 801, 1677, 2190, 2312, 2793 |
| Bbv12I | GWGCWC | 2 cut(s) | 110, 2835 |
| BbvCI | CCTCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 803, 1352, 1409, 1877, 2578 |
| BceAI | ACGGC | 1 cut(s) | 1584 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 992, 1026, 2335, 2369, 2842, 2876 |
| BciT130I | CCWGG | 3 cut(s) | 968, 1626, 1811 |
| BciVI | GTATCC | 1 cut(s) | 2850 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcnI | CCSGG | 1 cut(s) | 1374 |
| BfaI | CTAG | 4 cut(s) | 111, 1214, 1473, 2363 |
| BfmI | CTRYAG | 2 cut(s) | 1153, 2041 |
| BfuI | GTATCC | 1 cut(s) | 2850 |
| BglII | AGATCT | 4 cut(s) | 70, 691, 2327, 3124 |
| BmcAI | AGTACT | 1 cut(s) | 2278 |
| Bme1390I | CCNGG | 4 cut(s) | 968, 1374, 1626, 1811 |
| Bme18I | GGWCC | 3 cut(s) | 997, 1807, 3013 |
| BmeT110I | CYCGRG | 2 cut(s) | 2718, 2957 |
| BmgBI | CACGTC | 1 cut(s) | 3107 |
| BmgT120I | GGNCC | 3 cut(s) | 997, 1807, 3013 |
| BmiI | GGNNCC | 3 cut(s) | 1890, 2015, 2812 |
| BmrFI | CCNGG | 4 cut(s) | 968, 1374, 1626, 1811 |
| BmrI | ACTGGG | 2 cut(s) | 1293, 3253 |
| BmsI | GCATC | 5 cut(s) | 574, 1689, 2154, 2943, 3048 |
| BmuI | ACTGGG | 2 cut(s) | 1293, 3253 |
| BpiI | GAAGAC | 6 cut(s) | 658, 801, 1677, 2190, 2312, 2793 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 344, 376 |
| BpmI | CTGGAG | 2 cut(s) | 1832, 2607 |
| Bpu10I | CCTNAGC | 2 cut(s) | 191, 1676 |
| BpuEI | CTTGAG | 2 cut(s) | 529, 2660 |
| BpuMI | CCSGG | 1 cut(s) | 1374 |
| BsaAI | YACGTR | 2 cut(s) | 269, 2243 |
| BsaBI | GATNNNNATC | 1 cut(s) | 432 |
| BsaHI | GRCGYC | 1 cut(s) | 1448 |
| BsaI | GGTCTC | 4 cut(s) | 227, 1040, 1297, 2781 |
| BsaJI | CCNNGG | 4 cut(s) | 145, 901, 1511, 1624 |
| BsaWI | WCCGGW | 3 cut(s) | 436, 1334, 3259 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 559, 1191, 1358, 1696, 1816 |
| Bse1I | ACTGG | 6 cut(s) | 157, 1299, 1431, 2808, 3248, 3294 |
| Bse21I | CCTNAGG | 1 cut(s) | 1918 |
| Bse3DI | GCAATG | 2 cut(s) | 1202, 2546 |
| Bse8I | GATNNNNATC | 1 cut(s) | 432 |
| BseAI | TCCGGA | 1 cut(s) | 3259 |
| BseBI | CCWGG | 3 cut(s) | 968, 1626, 1811 |
| BseDI | CCNNGG | 4 cut(s) | 145, 901, 1511, 1624 |
| BseGI | GGATG | 9 cut(s) | 472, 594, 1363, 1420, 1427, 1888, 2309, 2620, 3256 |
| BseJI | GATNNNNATC | 1 cut(s) | 432 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 559, 1191, 1358, 1696, 1816 |
| BseMI | GCAATG | 2 cut(s) | 1202, 2546 |
| BseNI | ACTGG | 6 cut(s) | 157, 1299, 1431, 2808, 3248, 3294 |
| BseRI | GAGGAG | 1 cut(s) | 2053 |
| BseYI | CCCAGC | 1 cut(s) | 1694 |
| BsgI | GTGCAG | 2 cut(s) | 1460, 1557 |
| Bsh1236I | CGCG | 2 cut(s) | 2345, 3334 |
| Bsh1285I | CGRYCG | 2 cut(s) | 250, 2887 |
| BsiEI | CGRYCG | 2 cut(s) | 250, 2887 |
| BsiHKAI | GWGCWC | 2 cut(s) | 110, 2835 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2718, 2957 |
| BsiSI | CCGG | 5 cut(s) | 437, 464, 1335, 1373, 3260 |
| BslFI | GGGAC | 2 cut(s) | 321, 2616 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 559, 1191, 1358, 1696, 1816 |
| BsmBI | CGTCTC | 1 cut(s) | 3221 |
| BsmFI | GGGAC | 2 cut(s) | 321, 2616 |
| BsmI | GAATGC | 1 cut(s) | 3000 |
| Bso31I | GGTCTC | 4 cut(s) | 227, 1040, 1297, 2781 |
| BsoBI | CYCGRG | 2 cut(s) | 2718, 2957 |
| Bsp1286I | GDGCHC | 4 cut(s) | 110, 1891, 2835, 3256 |
| Bsp13I | TCCGGA | 1 cut(s) | 3259 |
| Bsp1407I | TGTACA | 1 cut(s) | 700 |
| Bsp19I | CCATGG | 1 cut(s) | 1511 |
| BspEI | TCCGGA | 1 cut(s) | 3259 |
| BspFNI | CGCG | 2 cut(s) | 2345, 3334 |
| BspHI | TCATGA | 3 cut(s) | 568, 2083, 2104 |
| BspLI | GGNNCC | 3 cut(s) | 1890, 2015, 2812 |
| BspPI | GGATC | 3 cut(s) | 428, 1961, 2314 |
| BspQI | GCTCTTC | 2 cut(s) | 393, 735 |
| BspTNI | GGTCTC | 4 cut(s) | 227, 1040, 1297, 2781 |
| BsrDI | GCAATG | 2 cut(s) | 1202, 2546 |
| BsrGI | TGTACA | 1 cut(s) | 700 |
| BsrI | ACTGG | 6 cut(s) | 157, 1299, 1431, 2808, 3248, 3294 |
| BssECI | CCNNGG | 4 cut(s) | 145, 901, 1511, 1624 |
| BssNAI | GTATAC | 1 cut(s) | 1646 |
| BssNI | GRCGYC | 1 cut(s) | 1448 |
| BssSI | CACGAG | 1 cut(s) | 294 |
| BssT1I | CCWWGG | 2 cut(s) | 145, 1511 |
| Bst1107I | GTATAC | 1 cut(s) | 1646 |
| Bst2BI | CACGAG | 1 cut(s) | 294 |
| Bst2UI | CCWGG | 3 cut(s) | 968, 1626, 1811 |
| Bst4CI | ACNGT | 6 cut(s) | 866, 951, 1124, 1849, 2599, 2704 |
| BstACI | GRCGYC | 1 cut(s) | 1448 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 272, 284, 1789, 3160 |
| BstAUI | TGTACA | 1 cut(s) | 700 |
| BstBAI | YACGTR | 2 cut(s) | 269, 2243 |
| BstC8I | GCNNGC | 7 cut(s) | 501, 1446, 1790, 1794, 1854, 2219, 2988 |
| BstDSI | CCRYGG | 2 cut(s) | 901, 1511 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1814 |
| BstF5I | GGATG | 9 cut(s) | 472, 594, 1363, 1420, 1427, 1888, 2309, 2620, 3256 |
| BstFNI | CGCG | 2 cut(s) | 2345, 3334 |
| BstHHI | GCGC | 1 cut(s) | 1798 |
| BstMCI | CGRYCG | 2 cut(s) | 250, 2887 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 272, 278, 281, 284, 290, 1164, 1700, 1789, 3160 |
| BstNI | CCWGG | 3 cut(s) | 968, 1626, 1811 |
| BstNSI | RCATGY | 3 cut(s) | 1792, 1796, 2870 |
| BstSCI | CCNGG | 4 cut(s) | 966, 1372, 1624, 1809 |
| BstSFI | CTRYAG | 2 cut(s) | 1153, 2041 |
| BstUI | CGCG | 2 cut(s) | 2345, 3334 |
| BstV2I | GAAGAC | 6 cut(s) | 658, 801, 1677, 2190, 2312, 2793 |
| BstX2I | RGATCY | 4 cut(s) | 70, 691, 2327, 3124 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 152, 2408 |
| BstYI | RGATCY | 4 cut(s) | 70, 691, 2327, 3124 |
| BstZ17I | GTATAC | 1 cut(s) | 1646 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1918 |
| BsuI | GTATCC | 1 cut(s) | 2850 |
| BtgI | CCRYGG | 2 cut(s) | 901, 1511 |
| BtrI | CACGTC | 1 cut(s) | 3107 |
| BtsCI | GGATG | 9 cut(s) | 472, 594, 1363, 1420, 1427, 1888, 2309, 2620, 3256 |
| BtsI | GCAGTG | 2 cut(s) | 1767, 1918 |
| Cac8I | GCNNGC | 7 cut(s) | 501, 1446, 1790, 1794, 1854, 2219, 2988 |
| CaiI | CAGNNNCTG | 2 cut(s) | 284, 1847 |
| CciI | TCATGA | 3 cut(s) | 568, 2083, 2104 |
| CfoI | GCGC | 1 cut(s) | 1798 |
| Cfr13I | GGNCC | 3 cut(s) | 997, 1807, 3013 |
| CseI | GACGC | 4 cut(s) | 1013, 1437, 1578, 3354 |
| Csp6I | GTAC | 9 cut(s) | 518, 701, 1392, 1516, 2277, 2341, 2816, 3093, 3214 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 46, 81, 1966, 2001 |
| CviQI | GTAC | 9 cut(s) | 518, 701, 1392, 1516, 2277, 2341, 2816, 3093, 3214 |
| DraIII | CACNNNGTG | 2 cut(s) | 1093, 3160 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1834 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1834 |
| EciI | GGCGGA | 1 cut(s) | 752 |
| Ecl136II | GAGCTC | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 2 cut(s) | 145, 1511 |
| Eco24I | GRGCYC | 3 cut(s) | 110, 1891, 3256 |
| Eco31I | GGTCTC | 4 cut(s) | 227, 1040, 1297, 2781 |
| Eco32I | GATATC | 1 cut(s) | 2523 |
| Eco47I | GGWCC | 3 cut(s) | 997, 1807, 3013 |
| Eco53kI | GAGCTC | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 4 cut(s) | 1425, 1503, 1544, 3113 |
| Eco72I | CACGTG | 1 cut(s) | 269 |
| Eco81I | CCTNAGG | 1 cut(s) | 1918 |
| Eco88I | CYCGRG | 2 cut(s) | 2718, 2957 |
| EcoICRI | GAGCTC | 1 cut(s) | 108 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1814 |
| EcoRI | GAATTC | 4 cut(s) | 971, 1477, 2381, 2963 |
| EcoRII | CCWGG | 3 cut(s) | 966, 1624, 1809 |
| EcoRV | GATATC | 1 cut(s) | 2523 |
| EcoT14I | CCWWGG | 2 cut(s) | 145, 1511 |
| EcoT22I | ATGCAT | 1 cut(s) | 1794 |
| EcoT38I | GRGCYC | 3 cut(s) | 110, 1891, 3256 |
| ErhI | CCWWGG | 2 cut(s) | 145, 1511 |
| Esp3I | CGTCTC | 1 cut(s) | 3221 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1525, 1557, 2175, 2207, 2245, 2277 |
| FaqI | GGGAC | 2 cut(s) | 321, 2616 |
| FauI | CCCGC | 2 cut(s) | 298, 1916 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| FblI | GTMKAC | 2 cut(s) | 1144, 1645 |
| FokI | GGATG | 9 cut(s) | 479, 601, 1370, 1414, 1427, 1895, 2296, 2627, 3243 |
| FriOI | GRGCYC | 3 cut(s) | 110, 1891, 3256 |
| FspBI | CTAG | 4 cut(s) | 111, 1214, 1473, 2363 |
| GlaI | GCGC | 1 cut(s) | 1797 |
| GsaI | CCCAGC | 1 cut(s) | 1698 |
| GsuI | CTGGAG | 2 cut(s) | 1832, 2607 |
| HapII | CCGG | 5 cut(s) | 437, 464, 1335, 1373, 3260 |
| HgaI | GACGC | 4 cut(s) | 1013, 1437, 1578, 3354 |
| HhaI | GCGC | 1 cut(s) | 1798 |
| Hin1I | GRCGYC | 1 cut(s) | 1448 |
| Hin6I | GCGC | 1 cut(s) | 1796 |
| HinP1I | GCGC | 1 cut(s) | 1796 |
| HincII | GTYRAC | 2 cut(s) | 2034, 2801 |
| HindII | GTYRAC | 2 cut(s) | 2034, 2801 |
| HpaI | GTTAAC | 1 cut(s) | 2034 |
| HpaII | CCGG | 5 cut(s) | 437, 464, 1335, 1373, 3260 |
| HphI | GGTGA | 9 cut(s) | 191, 542, 592, 1034, 1287, 1500, 1830, 2559, 3304 |
| Hpy166II | GTNNAC | 7 cut(s) | 703, 1145, 1646, 2034, 2698, 2801, 3241 |
| Hpy8I | GTNNAC | 7 cut(s) | 703, 1145, 1646, 2034, 2698, 2801, 3241 |
| Hpy99I | CGWCG | 1 cut(s) | 1007 |
| HpyCH4III | ACNGT | 6 cut(s) | 866, 951, 1124, 1849, 2599, 2704 |
| HpyCH4IV | ACGT | 4 cut(s) | 268, 2242, 2556, 3106 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 272, 278, 281, 284, 290, 1164, 1700, 1789, 3160 |
| HpySE526I | ACGT | 4 cut(s) | 268, 2242, 2556, 3106 |
| Hsp92I | GRCGYC | 1 cut(s) | 1448 |
| HspAI | GCGC | 1 cut(s) | 1796 |
| Kpn2I | TCCGGA | 1 cut(s) | 3259 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| KspAI | GTTAAC | 1 cut(s) | 2034 |
| LguI | GCTCTTC | 2 cut(s) | 393, 735 |
| LmnI | GCTCC | 4 cut(s) | 562, 1894, 2917, 2929 |
| LweI | GCATC | 5 cut(s) | 574, 1689, 2154, 2943, 3048 |
| MaeI | CTAG | 4 cut(s) | 111, 1214, 1473, 2363 |
| MaeII | ACGT | 4 cut(s) | 268, 2242, 2556, 3106 |
| MaeIII | GTNAC | 9 cut(s) | 1330, 1346, 1506, 1836, 1955, 2617, 2648, 3147, 3183 |
| MfeI | CAATTG | 2 cut(s) | 1962, 2402 |
| MflI | RGATCY | 4 cut(s) | 70, 691, 2327, 3124 |
| MhlI | GDGCHC | 4 cut(s) | 110, 1891, 2835, 3256 |
| MlyI | GAGTC | 6 cut(s) | 1418, 1478, 1514, 2421, 2477, 2614 |
| MmeI | TCCRAC | 4 cut(s) | 1392, 2505, 3265, 3299 |
| Mph1103I | ATGCAT | 1 cut(s) | 1794 |
| MroI | TCCGGA | 1 cut(s) | 3259 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1557, 2018, 2187, 3237 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2109, 2530, 2871 |
| MspA1I | CMGCKG | 5 cut(s) | 281, 523, 856, 1403, 1444 |
| MspI | CCGG | 5 cut(s) | 437, 464, 1335, 1373, 3260 |
| MspR9I | CCNGG | 4 cut(s) | 968, 1374, 1626, 1811 |
| MunI | CAATTG | 2 cut(s) | 1962, 2402 |
| Mva1269I | GAATGC | 1 cut(s) | 3000 |
| MvaI | CCWGG | 3 cut(s) | 968, 1626, 1811 |
| MvnI | CGCG | 2 cut(s) | 2345, 3334 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 272, 278, 281, 284, 290, 1164, 1700, 1789, 3160 |
| NciI | CCSGG | 1 cut(s) | 1374 |
| NcoI | CCATGG | 1 cut(s) | 1511 |
| NlaIV | GGNNCC | 3 cut(s) | 1890, 2015, 2812 |
| NmuCI | GTSAC | 6 cut(s) | 1330, 1346, 1506, 1836, 2617, 2648 |
| NsiI | ATGCAT | 1 cut(s) | 1794 |
| NspI | RCATGY | 3 cut(s) | 1792, 1796, 2870 |
| OliI | CACNNNNGTG | 1 cut(s) | 2530 |
| PaeI | GCATGC | 2 cut(s) | 1792, 1796 |
| PagI | TCATGA | 3 cut(s) | 568, 2083, 2104 |
| PciSI | GCTCTTC | 2 cut(s) | 393, 735 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3354 |
| PctI | GAATGC | 1 cut(s) | 3000 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1557, 2018, 2187, 3237 |
| PfeI | GAWTC | 7 cut(s) | 259, 944, 1181, 1325, 1932, 2119, 3359 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 559, 1358 |
| PfoI | TCCNGGA | 1 cut(s) | 1809 |
| Ple19I | CGATCG | 2 cut(s) | 250, 2887 |
| PleI | GAGTC | 6 cut(s) | 1417, 1477, 1513, 2420, 2477, 2614 |
| PmaCI | CACGTG | 1 cut(s) | 269 |
| PmlI | CACGTG | 1 cut(s) | 269 |
| PpsI | GAGTC | 6 cut(s) | 1417, 1477, 1513, 2420, 2477, 2614 |
| Ppu21I | YACGTR | 2 cut(s) | 269, 2243 |
| PshBI | ATTAAT | 1 cut(s) | 1860 |
| Psp124BI | GAGCTC | 1 cut(s) | 110 |
| Psp6I | CCWGG | 3 cut(s) | 966, 1624, 1809 |
| PspCI | CACGTG | 1 cut(s) | 269 |
| PspFI | CCCAGC | 1 cut(s) | 1694 |
| PspGI | CCWGG | 3 cut(s) | 966, 1624, 1809 |
| PspN4I | GGNNCC | 3 cut(s) | 1890, 2015, 2812 |
| PspPI | GGNCC | 3 cut(s) | 997, 1807, 3013 |
| PstNI | CAGNNNCTG | 2 cut(s) | 284, 1847 |
| PsuI | RGATCY | 4 cut(s) | 70, 691, 2327, 3124 |
| PvuI | CGATCG | 2 cut(s) | 250, 2887 |
| PvuII | CAGCTG | 4 cut(s) | 281, 523, 856, 1444 |
| RsaI | GTAC | 9 cut(s) | 519, 702, 1393, 1517, 2278, 2342, 2817, 3094, 3215 |
| RsaNI | GTAC | 9 cut(s) | 518, 701, 1392, 1516, 2277, 2341, 2816, 3093, 3214 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2109, 2530, 2871 |
| SacI | GAGCTC | 1 cut(s) | 110 |
| SapI | GCTCTTC | 2 cut(s) | 393, 735 |
| Sau96I | GGNCC | 3 cut(s) | 997, 1807, 3013 |
| ScaI | AGTACT | 1 cut(s) | 2278 |
| SchI | GAGTC | 6 cut(s) | 1418, 1478, 1514, 2421, 2477, 2614 |
| ScrFI | CCNGG | 4 cut(s) | 968, 1374, 1626, 1811 |
| SduI | GDGCHC | 4 cut(s) | 110, 1891, 2835, 3256 |
| SfaNI | GCATC | 5 cut(s) | 574, 1689, 2154, 2943, 3048 |
| SfcI | CTRYAG | 2 cut(s) | 1153, 2041 |
| SinI | GGWCC | 3 cut(s) | 997, 1807, 3013 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2109, 2530, 2871 |
| SmlI | CTYRAG | 2 cut(s) | 508, 2675 |
| SmoI | CTYRAG | 2 cut(s) | 508, 2675 |
| SphI | GCATGC | 2 cut(s) | 1792, 1796 |
| SspI | AATATT | 2 cut(s) | 1456, 3048 |
| SspMI | CTAG | 4 cut(s) | 111, 1214, 1473, 2363 |
| SstI | GAGCTC | 1 cut(s) | 110 |
| StyD4I | CCNGG | 4 cut(s) | 966, 1372, 1624, 1809 |
| StyI | CCWWGG | 2 cut(s) | 145, 1511 |
| TaaI | ACNGT | 6 cut(s) | 866, 951, 1124, 1849, 2599, 2704 |
| TaiI | ACGT | 4 cut(s) | 271, 2245, 2559, 3109 |
| TaqI | TCGA | 8 cut(s) | 102, 1002, 2066, 2883, 3079, 3195, 3348, 3357 |
| TatI | WGTACW | 3 cut(s) | 700, 2276, 3092 |
| TauI | GCSGC | 2 cut(s) | 278, 3337 |
| TfiI | GAWTC | 7 cut(s) | 259, 944, 1181, 1325, 1932, 2119, 3359 |
| TseFI | GTSAC | 6 cut(s) | 1330, 1346, 1506, 1836, 2617, 2648 |
| Tsp45I | GTSAC | 6 cut(s) | 1330, 1346, 1506, 1836, 2617, 2648 |
| TspGWI | ACGGA | 4 cut(s) | 2166, 2533, 2803, 3245 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 559, 1358 |
| VpaK11BI | GGWCC | 3 cut(s) | 997, 1807, 3013 |
| VspI | ATTAAT | 1 cut(s) | 1860 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1814 |
| XapI | RAATTY | 9 cut(s) | 185, 592, 658, 971, 1284, 1477, 2381, 2963, 3295 |
| XceI | RCATGY | 3 cut(s) | 1792, 1796, 2870 |
| XmiI | GTMKAC | 2 cut(s) | 1144, 1645 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1557, 2018, 2187, 3237 |
| XspI | CTAG | 4 cut(s) | 111, 1214, 1473, 2363 |
| ZrmI | AGTACT | 1 cut(s) | 2278 |
| Zsp2I | ATGCAT | 1 cut(s) | 1794 |