Coiled-coil domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27900 AT2G27900 |
| fragaria_vesca | FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 |
| malus_domestica | MD03G1129700.v1.1 MD11G1151500.v1.1 |
| prunus_persica | Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 |
| pyrus_communis | pycom11g12360 |
| rosa_chinensis | RchiOBHm_Chr5g0056331 |
| rosa_laevigata | RLG00000035088 |
| rosa_multiflora | Rmu_sc0000317.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00023990 Rroxscaffold_1G00027590 |
| rosa_rugosa | Rorug05G0298900 Rorug05G0299000 Rorug05G0299000 |
| rosa_samantha | Rh5AG369700 Rh5BG380700 Rh5CG404100 Rh5DG393900 |
| rosa_wichuraiana | Rw0G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2681 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 375, 2542 |
| AatII | GACGTC | 1 cut(s) | 1317 |
| Acc16I | TGCGCA | 1 cut(s) | 2689 |
| Acc36I | ACCTGC | 2 cut(s) | 1451, 2681 |
| AccB1I | GGYRCC | 1 cut(s) | 2003 |
| AccI | GTMKAC | 2 cut(s) | 1135, 1982 |
| AciI | CCGC | 8 cut(s) | 28, 204, 266, 541, 646, 1746, 3004, 3106 |
| AclI | AACGTT | 2 cut(s) | 532, 2406 |
| AcoI | YGGCCR | 4 cut(s) | 29, 754, 1728, 3162 |
| AcuI | CTGAAG | 7 cut(s) | 360, 480, 1145, 1580, 1750, 2552, 2747 |
| AcyI | GRCGYC | 1 cut(s) | 1314 |
| AfaI | GTAC | 5 cut(s) | 879, 1525, 1887, 2817, 3094 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 663, 1328, 1599, 1600, 3010 |
| AhlI | ACTAGT | 1 cut(s) | 1481 |
| AjnI | CCWGG | 7 cut(s) | 109, 957, 1327, 1408, 1961, 2375, 2656 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2152, 2184 |
| Alw21I | GWGCWC | 6 cut(s) | 194, 783, 1927, 2835, 3243, 3256 |
| Alw26I | GTCTC | 7 cut(s) | 45, 329, 481, 1321, 2155, 2678, 3077 |
| Alw44I | GTGCAC | 1 cut(s) | 3239 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2696 |
| Ama87I | CYCGRG | 2 cut(s) | 245, 782 |
| ApaLI | GTGCAC | 1 cut(s) | 3239 |
| ApeKI | GCWGC | 7 cut(s) | 51, 263, 269, 272, 275, 1757, 3151 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 307, 339 |
| AseI | ATTAAT | 2 cut(s) | 2520, 2871 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2220 |
| AspLEI | GCGC | 1 cut(s) | 2690 |
| AspS9I | GGNCC | 5 cut(s) | 127, 201, 418, 508, 2581 |
| AsuC2I | CCSGG | 4 cut(s) | 131, 1732, 3224, 3260 |
| AsuHPI | GGTGA | 7 cut(s) | 583, 1341, 1928, 2120, 2153, 2499, 3248 |
| AsuII | TTCGAA | 1 cut(s) | 16 |
| AsuNHI | GCTAGC | 1 cut(s) | 1676 |
| AvaI | CYCGRG | 2 cut(s) | 245, 782 |
| AvaII | GGWCC | 3 cut(s) | 127, 201, 418 |
| BaeGI | GKGCMC | 1 cut(s) | 3243 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1623, 1656 |
| BalI | TGGCCA | 2 cut(s) | 756, 3164 |
| BamHI | GGATCC | 1 cut(s) | 1541 |
| BanI | GGYRCC | 1 cut(s) | 2003 |
| BanII | GRGCYC | 4 cut(s) | 110, 194, 783, 3112 |
| BauI | CACGAG | 3 cut(s) | 258, 285, 1635 |
| BbsI | GAAGAC | 3 cut(s) | 1711, 2342, 2540 |
| Bbv12I | GWGCWC | 6 cut(s) | 194, 783, 1927, 2835, 3243, 3256 |
| BbvI | GCAGC | 7 cut(s) | 63, 250, 256, 259, 287, 1744, 3163 |
| BccI | CCATC | 5 cut(s) | 463, 1913, 2111, 2306, 2593 |
| BceAI | ACGGC | 1 cut(s) | 876 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 236, 270, 1115, 1149 |
| BciT130I | CCWGG | 7 cut(s) | 111, 959, 1329, 1410, 1963, 2377, 2658 |
| BclI | TGATCA | 2 cut(s) | 3138, 3291 |
| BcnI | CCSGG | 4 cut(s) | 131, 1732, 3224, 3260 |
| BcoDI | GTCTC | 7 cut(s) | 45, 329, 481, 1321, 2155, 2678, 3077 |
| BcuI | ACTAGT | 1 cut(s) | 1481 |
| BfaI | CTAG | 6 cut(s) | 678, 1205, 1482, 1677, 2277, 2927 |
| BfmI | CTRYAG | 8 cut(s) | 273, 873, 1144, 1395, 1461, 2778, 3128, 3149 |
| BfuAI | ACCTGC | 2 cut(s) | 1451, 2681 |
| BglII | AGATCT | 4 cut(s) | 1708, 2218, 2732, 2821 |
| BlpI | GCTNAGC | 1 cut(s) | 2475 |
| Bme18I | GGWCC | 3 cut(s) | 127, 201, 418 |
| BmeT110I | CYCGRG | 2 cut(s) | 245, 782 |
| BmgT120I | GGNCC | 5 cut(s) | 127, 201, 418, 508, 2581 |
| BmiI | GGNNCC | 5 cut(s) | 129, 252, 1543, 2005, 2583 |
| BmrI | ACTGGG | 2 cut(s) | 2640, 3253 |
| BmsI | GCATC | 6 cut(s) | 570, 658, 985, 1558, 2675, 2800 |
| BmtI | GCTAGC | 1 cut(s) | 1680 |
| BmuI | ACTGGG | 2 cut(s) | 2640, 3253 |
| BpiI | GAAGAC | 3 cut(s) | 1711, 2342, 2540 |
| BpmI | CTGGAG | 2 cut(s) | 1311, 2732 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1905 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2475 |
| Bpu14I | TTCGAA | 1 cut(s) | 16 |
| BpuEI | CTTGAG | 1 cut(s) | 2660 |
| BpuMI | CCSGG | 4 cut(s) | 131, 1732, 3224, 3260 |
| BsaHI | GRCGYC | 1 cut(s) | 1314 |
| BsaI | GGTCTC | 3 cut(s) | 2155, 2678, 3077 |
| BsaJI | CCNNGG | 8 cut(s) | 109, 110, 145, 246, 892, 1547, 1731, 1962 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2690, 2720, 2847, 2877 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 663, 1328, 1599, 1600, 3010 |
| Bse118I | RCCGGY | 2 cut(s) | 1913, 2000 |
| Bse1I | ACTGG | 8 cut(s) | 428, 519, 2110, 2338, 2431, 2569, 2646, 3248 |
| Bse3DI | GCAATG | 2 cut(s) | 162, 550 |
| BseBI | CCWGG | 7 cut(s) | 111, 959, 1329, 1410, 1963, 2377, 2658 |
| BseDI | CCNNGG | 8 cut(s) | 109, 110, 145, 246, 892, 1547, 1731, 1962 |
| BseGI | GGATG | 6 cut(s) | 585, 1522, 2072, 2594, 2663, 2835 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 663, 1328, 1599, 1600, 3010 |
| BseMI | GCAATG | 2 cut(s) | 162, 550 |
| BseMII | CTCAG | 6 cut(s) | 179, 738, 1023, 1550, 1896, 2489 |
| BseNI | ACTGG | 8 cut(s) | 428, 519, 2110, 2338, 2431, 2569, 2646, 3248 |
| BseRI | GAGGAG | 3 cut(s) | 404, 986, 3014 |
| BseSI | GKGCMC | 1 cut(s) | 3243 |
| BseX3I | CGGCCG | 1 cut(s) | 29 |
| BseXI | GCAGC | 7 cut(s) | 63, 250, 256, 259, 287, 1744, 3163 |
| BseYI | CCCAGC | 1 cut(s) | 910 |
| BsgI | GTGCAG | 1 cut(s) | 240 |
| Bsh1285I | CGRYCG | 1 cut(s) | 32 |
| BshNI | GGYRCC | 1 cut(s) | 2003 |
| BsiEI | CGRYCG | 1 cut(s) | 32 |
| BsiHKAI | GWGCWC | 6 cut(s) | 194, 783, 1927, 2835, 3243, 3256 |
| BsiHKCI | CYCGRG | 2 cut(s) | 245, 782 |
| BsiSI | CCGG | 6 cut(s) | 131, 1731, 1914, 2001, 3224, 3260 |
| BslFI | GGGAC | 3 cut(s) | 113, 228, 1617 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 663, 1328, 1599, 1600, 3010 |
| BsmAI | GTCTC | 7 cut(s) | 45, 329, 481, 1321, 2155, 2678, 3077 |
| BsmBI | CGTCTC | 1 cut(s) | 1321 |
| BsmFI | GGGAC | 3 cut(s) | 113, 228, 1617 |
| BsmI | GAATGC | 1 cut(s) | 1963 |
| Bso31I | GGTCTC | 3 cut(s) | 2155, 2678, 3077 |
| BsoBI | CYCGRG | 2 cut(s) | 245, 782 |
| Bsp119I | TTCGAA | 1 cut(s) | 16 |
| Bsp1286I | GDGCHC | 8 cut(s) | 110, 194, 783, 1927, 2835, 3112, 3243, 3256 |
| Bsp1407I | TGTACA | 1 cut(s) | 3092 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2475 |
| BspACI | CCGC | 8 cut(s) | 28, 204, 266, 541, 646, 1746, 3004, 3106 |
| BspCNI | CTCAG | 6 cut(s) | 180, 739, 1024, 1551, 1897, 2488 |
| BspHI | TCATGA | 1 cut(s) | 1237 |
| BspLI | GGNNCC | 5 cut(s) | 129, 252, 1543, 2005, 2583 |
| BspMAI | CTGCAG | 3 cut(s) | 277, 877, 3153 |
| BspMI | ACCTGC | 2 cut(s) | 1451, 2681 |
| BspOI | GCTAGC | 1 cut(s) | 1680 |
| BspQI | GCTCTTC | 1 cut(s) | 726 |
| BspT104I | TTCGAA | 1 cut(s) | 16 |
| BspT107I | GGYRCC | 1 cut(s) | 2003 |
| BspTNI | GGTCTC | 3 cut(s) | 2155, 2678, 3077 |
| BsrDI | GCAATG | 2 cut(s) | 162, 550 |
| BsrFI | RCCGGY | 2 cut(s) | 1913, 2000 |
| BsrGI | TGTACA | 1 cut(s) | 3092 |
| BsrI | ACTGG | 8 cut(s) | 428, 519, 2110, 2338, 2431, 2569, 2646, 3248 |
| BssAI | RCCGGY | 2 cut(s) | 1913, 2000 |
| BssECI | CCNNGG | 8 cut(s) | 109, 110, 145, 246, 892, 1547, 1731, 1962 |
| BssNI | GRCGYC | 1 cut(s) | 1314 |
| BssSI | CACGAG | 3 cut(s) | 258, 285, 1635 |
| BssT1I | CCWWGG | 1 cut(s) | 145 |
| Bst2BI | CACGAG | 3 cut(s) | 258, 285, 1635 |
| Bst2UI | CCWGG | 7 cut(s) | 111, 959, 1329, 1410, 1963, 2377, 2658 |
| Bst4CI | ACNGT | 6 cut(s) | 377, 988, 1523, 1885, 2564, 2779 |
| Bst6I | CTCTTC | 5 cut(s) | 408, 726, 927, 2006, 3317 |
| BstACI | GRCGYC | 1 cut(s) | 1314 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 263, 281 |
| BstAUI | TGTACA | 1 cut(s) | 3092 |
| BstBI | TTCGAA | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 8 cut(s) | 474, 774, 1678, 1911, 2064, 2988, 3108, 3149 |
| BstDSI | CCRYGG | 2 cut(s) | 892, 1547 |
| BstEII | GGTNACC | 1 cut(s) | 2505 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 661 |
| BstF5I | GGATG | 6 cut(s) | 585, 1522, 2072, 2594, 2663, 2835 |
| BstHHI | GCGC | 1 cut(s) | 2690 |
| BstMAI | GTCTC | 7 cut(s) | 45, 329, 481, 1321, 2155, 2678, 3077 |
| BstMCI | CGRYCG | 1 cut(s) | 32 |
| BstNI | CCWGG | 7 cut(s) | 111, 959, 1329, 1410, 1963, 2377, 2658 |
| BstNSI | RCATGY | 2 cut(s) | 733, 3252 |
| BstPI | GGTNACC | 1 cut(s) | 2505 |
| BstSFI | CTRYAG | 8 cut(s) | 273, 873, 1144, 1395, 1461, 2778, 3128, 3149 |
| BstSLI | GKGCMC | 1 cut(s) | 3243 |
| BstV1I | GCAGC | 7 cut(s) | 63, 250, 256, 259, 287, 1744, 3163 |
| BstV2I | GAAGAC | 3 cut(s) | 1711, 2342, 2540 |
| BstX2I | RGATCY | 7 cut(s) | 682, 1541, 1708, 2218, 2732, 2821, 3124 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2873 |
| BstYI | RGATCY | 7 cut(s) | 682, 1541, 1708, 2218, 2732, 2821, 3124 |
| BstZI | CGGCCG | 1 cut(s) | 29 |
| BtgI | CCRYGG | 2 cut(s) | 892, 1547 |
| BtgZI | GCGATG | 1 cut(s) | 195 |
| BtsCI | GGATG | 6 cut(s) | 585, 1522, 2072, 2594, 2663, 2835 |
| BtsI | GCAGTG | 2 cut(s) | 1193, 2170 |
| BtsIMutI | CAGTG | 5 cut(s) | 761, 1193, 2170, 2576, 3241 |
| BveI | ACCTGC | 2 cut(s) | 1451, 2681 |
| Cac8I | GCNNGC | 8 cut(s) | 474, 774, 1678, 1911, 2064, 2988, 3108, 3149 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2696 |
| CciI | TCATGA | 1 cut(s) | 1237 |
| CfoI | GCGC | 1 cut(s) | 2690 |
| Cfr10I | RCCGGY | 2 cut(s) | 1913, 2000 |
| Cfr13I | GGNCC | 5 cut(s) | 127, 201, 418, 508, 2581 |
| CseI | GACGC | 1 cut(s) | 1614 |
| Csp6I | GTAC | 5 cut(s) | 878, 1524, 1886, 2816, 3093 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1561, 1596, 1996, 2031, 2476, 2511 |
| CviAII | CATG | 9 cut(s) | 730, 758, 1238, 1246, 1294, 2993, 3115, 3166, 3249 |
| CviQI | GTAC | 5 cut(s) | 878, 1524, 1886, 2816, 3093 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 375, 2542 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 375, 2542 |
| EaeI | YGGCCR | 4 cut(s) | 29, 754, 1728, 3162 |
| EagI | CGGCCG | 1 cut(s) | 29 |
| Eam1104I | CTCTTC | 5 cut(s) | 408, 726, 927, 2006, 3317 |
| EarI | CTCTTC | 5 cut(s) | 408, 726, 927, 2006, 3317 |
| EciI | GGCGGA | 1 cut(s) | 193 |
| Ecl136II | GAGCTC | 2 cut(s) | 192, 781 |
| EclXI | CGGCCG | 1 cut(s) | 29 |
| Eco130I | CCWWGG | 1 cut(s) | 145 |
| Eco147I | AGGCCT | 1 cut(s) | 818 |
| Eco24I | GRGCYC | 4 cut(s) | 110, 194, 783, 3112 |
| Eco31I | GGTCTC | 3 cut(s) | 2155, 2678, 3077 |
| Eco32I | GATATC | 1 cut(s) | 1018 |
| Eco47I | GGWCC | 3 cut(s) | 127, 201, 418 |
| Eco52I | CGGCCG | 1 cut(s) | 29 |
| Eco53kI | GAGCTC | 2 cut(s) | 192, 781 |
| Eco57I | CTGAAG | 7 cut(s) | 360, 480, 1145, 1580, 1750, 2552, 2747 |
| Eco88I | CYCGRG | 2 cut(s) | 245, 782 |
| Eco91I | GGTNACC | 1 cut(s) | 2505 |
| EcoICRI | GAGCTC | 2 cut(s) | 192, 781 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 661 |
| EcoO109I | RGGNCCY | 2 cut(s) | 418, 2581 |
| EcoO65I | GGTNACC | 1 cut(s) | 2505 |
| EcoRI | GAATTC | 2 cut(s) | 2789, 2963 |
| EcoRII | CCWGG | 7 cut(s) | 109, 957, 1327, 1408, 1961, 2375, 2656 |
| EcoRV | GATATC | 1 cut(s) | 1018 |
| EcoT14I | CCWWGG | 1 cut(s) | 145 |
| EcoT22I | ATGCAT | 1 cut(s) | 585 |
| EcoT38I | GRGCYC | 4 cut(s) | 110, 194, 783, 3112 |
| ErhI | CCWWGG | 1 cut(s) | 145 |
| Esp3I | CGTCTC | 1 cut(s) | 1321 |
| FaeI | CATG | 9 cut(s) | 733, 761, 1241, 1249, 1297, 2996, 3118, 3169, 3252 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 405, 437, 2070, 2102, 2208, 2240, 2525, 2557 |
| FaqI | GGGAC | 3 cut(s) | 113, 228, 1617 |
| FatI | CATG | 9 cut(s) | 729, 757, 1237, 1245, 1293, 2992, 3114, 3165, 3248 |
| FauI | CCCGC | 2 cut(s) | 548, 3099 |
| FbaI | TGATCA | 2 cut(s) | 3138, 3291 |
| FblI | GTMKAC | 2 cut(s) | 1135, 1982 |
| FokI | GGATG | 6 cut(s) | 592, 1529, 2059, 2581, 2650, 2822 |
| FriOI | GRGCYC | 4 cut(s) | 110, 194, 783, 3112 |
| FspBI | CTAG | 6 cut(s) | 678, 1205, 1482, 1677, 2277, 2927 |
| FspI | TGCGCA | 1 cut(s) | 2689 |
| GlaI | GCGC | 1 cut(s) | 2689 |
| GsaI | CCCAGC | 1 cut(s) | 914 |
| GsuI | CTGGAG | 2 cut(s) | 1311, 2732 |
| HapII | CCGG | 6 cut(s) | 131, 1731, 1914, 2001, 3224, 3260 |
| HgaI | GACGC | 1 cut(s) | 1614 |
| HhaI | GCGC | 1 cut(s) | 2690 |
| Hin1I | GRCGYC | 1 cut(s) | 1314 |
| Hin1II | CATG | 9 cut(s) | 733, 761, 1241, 1249, 1297, 2996, 3118, 3169, 3252 |
| Hin6I | GCGC | 1 cut(s) | 2688 |
| HinP1I | GCGC | 1 cut(s) | 2688 |
| HincII | GTYRAC | 3 cut(s) | 1136, 2252, 2404 |
| HindII | GTYRAC | 3 cut(s) | 1136, 2252, 2404 |
| HpaII | CCGG | 6 cut(s) | 131, 1731, 1914, 2001, 3224, 3260 |
| HphI | GGTGA | 7 cut(s) | 583, 1341, 1928, 2120, 2153, 2499, 3248 |
| Hpy166II | GTNNAC | 6 cut(s) | 1136, 1983, 2252, 2404, 3093, 3241 |
| Hpy8I | GTNNAC | 6 cut(s) | 1136, 1983, 2252, 2404, 3093, 3241 |
| Hpy99I | CGWCG | 1 cut(s) | 1391 |
| HpyCH4III | ACNGT | 6 cut(s) | 377, 988, 1523, 1885, 2564, 2779 |
| HpyCH4IV | ACGT | 3 cut(s) | 532, 1314, 2406 |
| HpySE526I | ACGT | 3 cut(s) | 532, 1314, 2406 |
| Hsp92I | GRCGYC | 1 cut(s) | 1314 |
| Hsp92II | CATG | 9 cut(s) | 733, 761, 1241, 1249, 1297, 2996, 3118, 3169, 3252 |
| HspAI | GCGC | 1 cut(s) | 2688 |
| Ksp22I | TGATCA | 2 cut(s) | 3138, 3291 |
| LguI | GCTCTTC | 1 cut(s) | 726 |
| LmnI | GCTCC | 3 cut(s) | 197, 1922, 2868 |
| Lsp1109I | GCAGC | 7 cut(s) | 63, 250, 256, 259, 287, 1744, 3163 |
| LweI | GCATC | 6 cut(s) | 570, 658, 985, 1558, 2675, 2800 |
| MaeI | CTAG | 6 cut(s) | 678, 1205, 1482, 1677, 2277, 2927 |
| MaeII | ACGT | 3 cut(s) | 532, 1314, 2406 |
| MaeIII | GTNAC | 4 cut(s) | 1310, 2505, 2564, 2648 |
| MflI | RGATCY | 7 cut(s) | 682, 1541, 1708, 2218, 2732, 2821, 3124 |
| MhlI | GDGCHC | 8 cut(s) | 110, 194, 783, 1927, 2835, 3112, 3243, 3256 |
| MlsI | TGGCCA | 2 cut(s) | 756, 3164 |
| MluNI | TGGCCA | 2 cut(s) | 756, 3164 |
| MlyI | GAGTC | 1 cut(s) | 2647 |
| MmeI | TCCRAC | 3 cut(s) | 1827, 3102, 3299 |
| Mox20I | TGGCCA | 2 cut(s) | 756, 3164 |
| Mph1103I | ATGCAT | 1 cut(s) | 585 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2220 |
| MscI | TGGCCA | 2 cut(s) | 756, 3164 |
| MslI | CAYNNNNRTG | 6 cut(s) | 632, 2181, 2307, 2633, 2871, 3170 |
| Msp20I | TGGCCA | 2 cut(s) | 756, 3164 |
| MspA1I | CMGCKG | 3 cut(s) | 278, 847, 1258 |
| MspI | CCGG | 6 cut(s) | 131, 1731, 1914, 2001, 3224, 3260 |
| Mva1269I | GAATGC | 1 cut(s) | 1963 |
| MvaI | CCWGG | 7 cut(s) | 111, 959, 1329, 1410, 1963, 2377, 2658 |
| NciI | CCSGG | 4 cut(s) | 131, 1732, 3224, 3260 |
| NheI | GCTAGC | 1 cut(s) | 1676 |
| NlaIII | CATG | 9 cut(s) | 733, 761, 1241, 1249, 1297, 2996, 3118, 3169, 3252 |
| NlaIV | GGNNCC | 5 cut(s) | 129, 252, 1543, 2005, 2583 |
| NmeAIII | GCCGAG | 1 cut(s) | 195 |
| NmuCI | GTSAC | 3 cut(s) | 1310, 2505, 2564 |
| NsbI | TGCGCA | 1 cut(s) | 2689 |
| NsiI | ATGCAT | 1 cut(s) | 585 |
| NspI | RCATGY | 2 cut(s) | 733, 3252 |
| NspV | TTCGAA | 1 cut(s) | 16 |
| PaeR7I | CTCGAG | 1 cut(s) | 782 |
| PagI | TCATGA | 1 cut(s) | 1237 |
| PaqCI | CACCTGC | 1 cut(s) | 2681 |
| PasI | CCCWGGG | 1 cut(s) | 110 |
| PceI | AGGCCT | 1 cut(s) | 818 |
| PciSI | GCTCTTC | 1 cut(s) | 726 |
| PctI | GAATGC | 1 cut(s) | 1963 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2220 |
| PfoI | TCCNGGA | 2 cut(s) | 1327, 3222 |
| PleI | GAGTC | 1 cut(s) | 2646 |
| PpsI | GAGTC | 1 cut(s) | 2646 |
| PpuMI | RGGWCCY | 1 cut(s) | 418 |
| PshBI | ATTAAT | 2 cut(s) | 2520, 2871 |
| Psp124BI | GAGCTC | 2 cut(s) | 194, 783 |
| Psp1406I | AACGTT | 2 cut(s) | 532, 2406 |
| Psp5II | RGGWCCY | 1 cut(s) | 418 |
| Psp6I | CCWGG | 7 cut(s) | 109, 957, 1327, 1408, 1961, 2375, 2656 |
| PspEI | GGTNACC | 1 cut(s) | 2505 |
| PspFI | CCCAGC | 1 cut(s) | 910 |
| PspGI | CCWGG | 7 cut(s) | 109, 957, 1327, 1408, 1961, 2375, 2656 |
| PspN4I | GGNNCC | 5 cut(s) | 129, 252, 1543, 2005, 2583 |
| PspPI | GGNCC | 5 cut(s) | 127, 201, 418, 508, 2581 |
| PspPPI | RGGWCCY | 1 cut(s) | 418 |
| PspXI | VCTCGAGB | 1 cut(s) | 782 |
| PstI | CTGCAG | 3 cut(s) | 277, 877, 3153 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2696 |
| PsuI | RGATCY | 7 cut(s) | 682, 1541, 1708, 2218, 2732, 2821, 3124 |
| PvuII | CAGCTG | 3 cut(s) | 278, 847, 1258 |
| RsaI | GTAC | 5 cut(s) | 879, 1525, 1887, 2817, 3094 |
| RsaNI | GTAC | 5 cut(s) | 878, 1524, 1886, 2816, 3093 |
| RseI | CAYNNNNRTG | 6 cut(s) | 632, 2181, 2307, 2633, 2871, 3170 |
| SacI | GAGCTC | 2 cut(s) | 194, 783 |
| SalI | GTCGAC | 1 cut(s) | 1134 |
| SapI | GCTCTTC | 1 cut(s) | 726 |
| Sau96I | GGNCC | 5 cut(s) | 127, 201, 418, 508, 2581 |
| SchI | GAGTC | 1 cut(s) | 2647 |
| SduI | GDGCHC | 8 cut(s) | 110, 194, 783, 1927, 2835, 3112, 3243, 3256 |
| SfaNI | GCATC | 6 cut(s) | 570, 658, 985, 1558, 2675, 2800 |
| SfcI | CTRYAG | 8 cut(s) | 273, 873, 1144, 1395, 1461, 2778, 3128, 3149 |
| Sfr274I | CTCGAG | 1 cut(s) | 782 |
| SfuI | TTCGAA | 1 cut(s) | 16 |
| SinI | GGWCC | 3 cut(s) | 127, 201, 418 |
| SlaI | CTCGAG | 1 cut(s) | 782 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 632, 2181, 2307, 2633, 2871, 3170 |
| SmlI | CTYRAG | 2 cut(s) | 782, 2675 |
| SmoI | CTYRAG | 2 cut(s) | 782, 2675 |
| SpeI | ACTAGT | 1 cut(s) | 1481 |
| SseBI | AGGCCT | 1 cut(s) | 818 |
| SsiI | CCGC | 8 cut(s) | 28, 204, 266, 541, 646, 1746, 3004, 3106 |
| SspI | AATATT | 3 cut(s) | 839, 1096, 2724 |
| SspMI | CTAG | 6 cut(s) | 678, 1205, 1482, 1677, 2277, 2927 |
| SstI | GAGCTC | 2 cut(s) | 194, 783 |
| StuI | AGGCCT | 1 cut(s) | 818 |
| StyI | CCWWGG | 1 cut(s) | 145 |
| TaaI | ACNGT | 6 cut(s) | 377, 988, 1523, 1885, 2564, 2779 |
| TaiI | ACGT | 3 cut(s) | 535, 1317, 2409 |
| TaqI | TCGA | 8 cut(s) | 16, 783, 1135, 1389, 1658, 1955, 2263, 2719 |
| TaqII | GACCGA | 1 cut(s) | 1633 |
| TatI | WGTACW | 4 cut(s) | 877, 1523, 1885, 3092 |
| TauI | GCSGC | 3 cut(s) | 31, 269, 649 |
| TscAI | CASTG | 5 cut(s) | 768, 1193, 2170, 2576, 3248 |
| TseFI | GTSAC | 3 cut(s) | 1310, 2505, 2564 |
| TseI | GCWGC | 7 cut(s) | 51, 263, 269, 272, 275, 1757, 3151 |
| Tsp45I | GTSAC | 3 cut(s) | 1310, 2505, 2564 |
| TspGWI | ACGGA | 2 cut(s) | 57, 184 |
| TspRI | CASTG | 5 cut(s) | 768, 1193, 2170, 2576, 3248 |
| VneI | GTGCAC | 1 cut(s) | 3239 |
| VpaK11BI | GGWCC | 3 cut(s) | 127, 201, 418 |
| VspI | ATTAAT | 2 cut(s) | 2520, 2871 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 661 |
| XceI | RCATGY | 2 cut(s) | 733, 3252 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 502, 1373 |
| XhoI | CTCGAG | 1 cut(s) | 782 |
| XmiI | GTMKAC | 2 cut(s) | 1135, 1982 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2220 |
| XspI | CTAG | 6 cut(s) | 678, 1205, 1482, 1677, 2277, 2927 |
| ZraI | GACGTC | 1 cut(s) | 1315 |
| Zsp2I | ATGCAT | 1 cut(s) | 585 |