Coiled-coil domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27900 AT2G27900 |
| fragaria_vesca | FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 |
| malus_domestica | MD03G1129700.v1.1 MD11G1151500.v1.1 |
| prunus_persica | Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 |
| pyrus_communis | pycom11g12360 |
| rosa_chinensis | RchiOBHm_Chr5g0056331 |
| rosa_laevigata | RLG00000035088 |
| rosa_multiflora | Rmu_sc0000317.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00023990 Rroxscaffold_1G00027590 |
| rosa_rugosa | Rorug05G0298900 Rorug05G0299000 Rorug05G0299000 |
| rosa_samantha | Rh5AG369700 Rh5BG380700 Rh5CG404100 Rh5DG393900 |
| rosa_wichuraiana | Rw0G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2681 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2524 |
| Acc36I | ACCTGC | 2 cut(s) | 1385, 2681 |
| AccI | GTMKAC | 3 cut(s) | 1104, 1120, 3266 |
| AccII | CGCG | 3 cut(s) | 241, 2140, 3252 |
| AciI | CCGC | 8 cut(s) | 213, 251, 1260, 1350, 1549, 1734, 2138, 3004 |
| AclWI | GGATC | 7 cut(s) | 404, 675, 1101, 1537, 2326, 2727, 3132 |
| AcuI | CTGAAG | 5 cut(s) | 342, 893, 1738, 2534, 3113 |
| AcvI | CACGTG | 1 cut(s) | 3080 |
| AfaI | GTAC | 9 cut(s) | 813, 864, 1468, 1875, 2086, 2638, 2817, 3094, 3345 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1893, 3010 |
| AflIII | ACRYGT | 1 cut(s) | 3079 |
| AjnI | CCWGG | 7 cut(s) | 1312, 1833, 1891, 1943, 2357, 2656, 3332 |
| AleI | CACNNNNGTG | 1 cut(s) | 1460 |
| Alw21I | GWGCWC | 6 cut(s) | 82, 335, 706, 1217, 1915, 3243 |
| Alw26I | GTCTC | 6 cut(s) | 21, 466, 777, 2137, 2678, 3166 |
| Alw44I | GTGCAC | 1 cut(s) | 3239 |
| AlwI | GGATC | 7 cut(s) | 404, 675, 1101, 1537, 2326, 2727, 3132 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 254, 916, 2696 |
| Ama87I | CYCGRG | 2 cut(s) | 767, 2266 |
| AoxI | GGCC | 3 cut(s) | 304, 801, 1233 |
| ApaLI | GTGCAC | 1 cut(s) | 3239 |
| AseI | ATTAAT | 1 cut(s) | 2502 |
| AspLEI | GCGC | 3 cut(s) | 241, 1822, 3254 |
| AspS9I | GGNCC | 5 cut(s) | 106, 801, 1831, 2069, 2200 |
| AsuC2I | CCSGG | 1 cut(s) | 227 |
| AsuHPI | GGTGA | 6 cut(s) | 374, 568, 1664, 1916, 2108, 2586 |
| AsuII | TTCGAA | 1 cut(s) | 2162 |
| AvaI | CYCGRG | 2 cut(s) | 767, 2266 |
| AvaII | GGWCC | 4 cut(s) | 106, 1831, 2069, 2200 |
| BaeGI | GKGCMC | 2 cut(s) | 3243, 3250 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1611, 1644, 1974, 2007 |
| BanII | GRGCYC | 2 cut(s) | 335, 3112 |
| BauI | CACGAG | 2 cut(s) | 267, 1623 |
| BbrPI | CACGTG | 1 cut(s) | 3080 |
| BbsI | GAAGAC | 4 cut(s) | 194, 634, 1082, 2522 |
| Bbv12I | GWGCWC | 6 cut(s) | 82, 335, 706, 1217, 1915, 3243 |
| BccI | CCATC | 5 cut(s) | 1495, 1499, 1901, 1936, 2099 |
| BceAI | ACGGC | 3 cut(s) | 647, 861, 1128 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1100, 1134 |
| BciT130I | CCWGG | 7 cut(s) | 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| BclI | TGATCA | 2 cut(s) | 3138, 3291 |
| BcnI | CCSGG | 1 cut(s) | 227 |
| BcoDI | GTCTC | 6 cut(s) | 21, 466, 777, 2137, 2678, 3166 |
| BfaI | CTAG | 9 cut(s) | 90, 663, 932, 1190, 1497, 1971, 2921, 2927, 3347 |
| BfmI | CTRYAG | 7 cut(s) | 246, 255, 796, 827, 858, 1129, 2778 |
| BfuAI | ACCTGC | 2 cut(s) | 1385, 2681 |
| BglII | AGATCT | 2 cut(s) | 1696, 2821 |
| BlpI | GCTNAGC | 1 cut(s) | 2457 |
| BmcAI | AGTACT | 2 cut(s) | 813, 3345 |
| Bme1390I | CCNGG | 8 cut(s) | 227, 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| Bme18I | GGWCC | 4 cut(s) | 106, 1831, 2069, 2200 |
| BmeT110I | CYCGRG | 2 cut(s) | 767, 2266 |
| BmgT120I | GGNCC | 5 cut(s) | 106, 801, 1831, 2069, 2200 |
| BmiI | GGNNCC | 4 cut(s) | 108, 133, 234, 720 |
| BmrFI | CCNGG | 8 cut(s) | 227, 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| BmrI | ACTGGG | 2 cut(s) | 2235, 3253 |
| BmsI | GCATC | 7 cut(s) | 555, 643, 970, 1546, 1618, 2140, 2800 |
| BmuI | ACTGGG | 2 cut(s) | 2235, 3253 |
| BpiI | GAAGAC | 4 cut(s) | 194, 634, 1082, 2522 |
| BpmI | CTGGAG | 2 cut(s) | 2316, 2732 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2457 |
| Bpu14I | TTCGAA | 1 cut(s) | 2162 |
| BpuEI | CTTGAG | 1 cut(s) | 2660 |
| BpuMI | CCSGG | 1 cut(s) | 227 |
| BsaAI | YACGTR | 1 cut(s) | 3080 |
| BsaI | GGTCTC | 2 cut(s) | 2137, 2678 |
| BsaJI | CCNNGG | 7 cut(s) | 124, 150, 877, 1535, 1892, 1944, 2736 |
| BsaWI | WCCGGW | 1 cut(s) | 134 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 873, 903 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1893, 3010 |
| BseBI | CCWGG | 7 cut(s) | 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| BseDI | CCNNGG | 7 cut(s) | 124, 150, 877, 1535, 1892, 1944, 2736 |
| BseGI | GGATG | 6 cut(s) | 570, 1252, 1506, 1510, 2562, 2815 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1893, 3010 |
| BseMII | CTCAG | 9 cut(s) | 184, 723, 810, 861, 1008, 1068, 1691, 2471, 3252 |
| BseRI | GAGGAG | 3 cut(s) | 389, 971, 2852 |
| BseSI | GKGCMC | 2 cut(s) | 3243, 3250 |
| BseYI | CCCAGC | 2 cut(s) | 895, 1718 |
| BsgI | GTGCAG | 2 cut(s) | 1533, 2709 |
| Bsh1236I | CGCG | 3 cut(s) | 241, 2140, 3252 |
| BshFI | GGCC | 3 cut(s) | 306, 803, 1235 |
| BsiHKAI | GWGCWC | 6 cut(s) | 82, 335, 706, 1217, 1915, 3243 |
| BsiHKCI | CYCGRG | 2 cut(s) | 767, 2266 |
| BsiSI | CCGG | 3 cut(s) | 135, 227, 236 |
| BslFI | GGGAC | 3 cut(s) | 92, 912, 1013 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1893, 3010 |
| BsmAI | GTCTC | 6 cut(s) | 21, 466, 777, 2137, 2678, 3166 |
| BsmFI | GGGAC | 3 cut(s) | 92, 912, 1013 |
| BsmI | GAATGC | 2 cut(s) | 1668, 2296 |
| BsnI | GGCC | 3 cut(s) | 306, 803, 1235 |
| Bso31I | GGTCTC | 2 cut(s) | 2137, 2678 |
| BsoBI | CYCGRG | 2 cut(s) | 767, 2266 |
| Bsp119I | TTCGAA | 1 cut(s) | 2162 |
| Bsp1286I | GDGCHC | 8 cut(s) | 82, 335, 706, 1217, 1915, 3112, 3243, 3250 |
| Bsp1407I | TGTACA | 1 cut(s) | 1466 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2457 |
| BspACI | CCGC | 8 cut(s) | 213, 251, 1260, 1350, 1549, 1734, 2138, 3004 |
| BspANI | GGCC | 3 cut(s) | 306, 803, 1235 |
| BspCNI | CTCAG | 9 cut(s) | 183, 724, 811, 860, 1009, 1067, 1692, 2470, 3253 |
| BspFNI | CGCG | 3 cut(s) | 241, 2140, 3252 |
| BspHI | TCATGA | 3 cut(s) | 544, 1222, 1477 |
| BspLI | GGNNCC | 4 cut(s) | 108, 133, 234, 720 |
| BspMAI | CTGCAG | 5 cut(s) | 250, 259, 800, 831, 862 |
| BspMI | ACCTGC | 2 cut(s) | 1385, 2681 |
| BspPI | GGATC | 7 cut(s) | 404, 675, 1101, 1537, 2326, 2727, 3132 |
| BspQI | GCTCTTC | 1 cut(s) | 711 |
| BspT104I | TTCGAA | 1 cut(s) | 2162 |
| BspTNI | GGTCTC | 2 cut(s) | 2137, 2678 |
| BsrGI | TGTACA | 1 cut(s) | 1466 |
| BssECI | CCNNGG | 7 cut(s) | 124, 150, 877, 1535, 1892, 1944, 2736 |
| BssNAI | GTATAC | 1 cut(s) | 3267 |
| BssSI | CACGAG | 2 cut(s) | 267, 1623 |
| BssT1I | CCWWGG | 4 cut(s) | 124, 150, 1535, 2736 |
| Bst1107I | GTATAC | 1 cut(s) | 3267 |
| Bst2BI | CACGAG | 2 cut(s) | 267, 1623 |
| Bst2UI | CCWGG | 7 cut(s) | 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| Bst4CI | ACNGT | 4 cut(s) | 816, 973, 1133, 1873 |
| Bst6I | CTCTTC | 8 cut(s) | 316, 393, 711, 912, 1435, 1991, 2062, 3317 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 254, 263 |
| BstAUI | TGTACA | 1 cut(s) | 1466 |
| BstBAI | YACGTR | 1 cut(s) | 3080 |
| BstBI | TTCGAA | 1 cut(s) | 2162 |
| BstC8I | GCNNGC | 5 cut(s) | 243, 459, 1666, 2988, 3250 |
| BstDSI | CCRYGG | 1 cut(s) | 877 |
| BstF5I | GGATG | 6 cut(s) | 570, 1252, 1506, 1510, 2562, 2815 |
| BstFNI | CGCG | 3 cut(s) | 241, 2140, 3252 |
| BstHHI | GCGC | 3 cut(s) | 241, 1822, 3254 |
| BstMAI | GTCTC | 6 cut(s) | 21, 466, 777, 2137, 2678, 3166 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 36, 66, 245, 251, 254, 263, 1724, 3184 |
| BstNI | CCWGG | 7 cut(s) | 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| BstNSI | RCATGY | 2 cut(s) | 1111, 2609 |
| BstSCI | CCNGG | 8 cut(s) | 225, 1312, 1833, 1891, 1943, 2357, 2656, 3332 |
| BstSFI | CTRYAG | 7 cut(s) | 246, 255, 796, 827, 858, 1129, 2778 |
| BstSLI | GKGCMC | 2 cut(s) | 3243, 3250 |
| BstUI | CGCG | 3 cut(s) | 241, 2140, 3252 |
| BstV2I | GAAGAC | 4 cut(s) | 194, 634, 1082, 2522 |
| BstX2I | RGATCY | 6 cut(s) | 667, 1529, 1696, 2732, 2821, 3124 |
| BstYI | RGATCY | 6 cut(s) | 667, 1529, 1696, 2732, 2821, 3124 |
| BstZ17I | GTATAC | 1 cut(s) | 3267 |
| BsuRI | GGCC | 3 cut(s) | 306, 803, 1235 |
| BtgI | CCRYGG | 1 cut(s) | 877 |
| BtsCI | GGATG | 6 cut(s) | 570, 1252, 1506, 1510, 2562, 2815 |
| BtsI | GCAGTG | 3 cut(s) | 1178, 1516, 1560 |
| BtsIMutI | CAGTG | 7 cut(s) | 1138, 1178, 1516, 1560, 2284, 2558, 3241 |
| BveI | ACCTGC | 2 cut(s) | 1385, 2681 |
| Cac8I | GCNNGC | 5 cut(s) | 243, 459, 1666, 2988, 3250 |
| CaiI | CAGNNNCTG | 3 cut(s) | 254, 916, 2696 |
| CciI | TCATGA | 3 cut(s) | 544, 1222, 1477 |
| CfoI | GCGC | 3 cut(s) | 241, 1822, 3254 |
| Cfr13I | GGNCC | 5 cut(s) | 106, 801, 1831, 2069, 2200 |
| CseI | GACGC | 2 cut(s) | 1506, 1602 |
| CsiI | ACCWGGT | 1 cut(s) | 3332 |
| Csp6I | GTAC | 9 cut(s) | 812, 863, 1467, 1874, 2085, 2637, 2816, 3093, 3344 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1549, 1584, 1981, 2016, 2458, 2493 |
| CviQI | GTAC | 9 cut(s) | 812, 863, 1467, 1874, 2085, 2637, 2816, 3093, 3344 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2524 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2524 |
| Eam1104I | CTCTTC | 8 cut(s) | 316, 393, 711, 912, 1435, 1991, 2062, 3317 |
| EarI | CTCTTC | 8 cut(s) | 316, 393, 711, 912, 1435, 1991, 2062, 3317 |
| EciI | GGCGGA | 1 cut(s) | 1249 |
| Ecl136II | GAGCTC | 1 cut(s) | 333 |
| Eco130I | CCWWGG | 4 cut(s) | 124, 150, 1535, 2736 |
| Eco24I | GRGCYC | 2 cut(s) | 335, 3112 |
| Eco31I | GGTCTC | 2 cut(s) | 2137, 2678 |
| Eco32I | GATATC | 1 cut(s) | 2614 |
| Eco47I | GGWCC | 4 cut(s) | 106, 1831, 2069, 2200 |
| Eco53kI | GAGCTC | 1 cut(s) | 333 |
| Eco57I | CTGAAG | 5 cut(s) | 342, 893, 1738, 2534, 3113 |
| Eco72I | CACGTG | 1 cut(s) | 3080 |
| Eco88I | CYCGRG | 2 cut(s) | 767, 2266 |
| EcoICRI | GAGCTC | 1 cut(s) | 333 |
| EcoO109I | RGGNCCY | 2 cut(s) | 801, 2200 |
| EcoRI | GAATTC | 2 cut(s) | 389, 2590 |
| EcoRII | CCWGG | 7 cut(s) | 1312, 1833, 1891, 1943, 2357, 2656, 3332 |
| EcoRV | GATATC | 1 cut(s) | 2614 |
| EcoT14I | CCWWGG | 4 cut(s) | 124, 150, 1535, 2736 |
| EcoT22I | ATGCAT | 2 cut(s) | 570, 748 |
| EcoT38I | GRGCYC | 2 cut(s) | 335, 3112 |
| ErhI | CCWWGG | 4 cut(s) | 124, 150, 1535, 2736 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2263, 2295 |
| FaqI | GGGAC | 3 cut(s) | 92, 912, 1013 |
| FauI | CCCGC | 1 cut(s) | 220 |
| FbaI | TGATCA | 2 cut(s) | 3138, 3291 |
| FblI | GTMKAC | 3 cut(s) | 1104, 1120, 3266 |
| FokI | GGATG | 6 cut(s) | 577, 1259, 1513, 1517, 2569, 2822 |
| FriOI | GRGCYC | 2 cut(s) | 335, 3112 |
| FspBI | CTAG | 9 cut(s) | 90, 663, 932, 1190, 1497, 1971, 2921, 2927, 3347 |
| GlaI | GCGC | 3 cut(s) | 240, 1821, 3253 |
| GsaI | CCCAGC | 2 cut(s) | 899, 1722 |
| GsuI | CTGGAG | 2 cut(s) | 2316, 2732 |
| HaeIII | GGCC | 3 cut(s) | 306, 803, 1235 |
| HapII | CCGG | 3 cut(s) | 135, 227, 236 |
| HgaI | GACGC | 2 cut(s) | 1506, 1602 |
| HhaI | GCGC | 3 cut(s) | 241, 1822, 3254 |
| Hin6I | GCGC | 3 cut(s) | 239, 1820, 3252 |
| HinP1I | GCGC | 3 cut(s) | 239, 1820, 3252 |
| HincII | GTYRAC | 3 cut(s) | 1121, 1521, 2234 |
| HindII | GTYRAC | 3 cut(s) | 1121, 1521, 2234 |
| HinfI | GANTC | 8 cut(s) | 10, 770, 920, 1195, 1256, 1415, 2626, 3000 |
| HpaII | CCGG | 3 cut(s) | 135, 227, 236 |
| HphI | GGTGA | 6 cut(s) | 374, 568, 1664, 1916, 2108, 2586 |
| Hpy166II | GTNNAC | 8 cut(s) | 1105, 1121, 1467, 1521, 2234, 3093, 3241, 3267 |
| Hpy8I | GTNNAC | 8 cut(s) | 1105, 1121, 1467, 1521, 2234, 3093, 3241, 3267 |
| HpyCH4III | ACNGT | 4 cut(s) | 816, 973, 1133, 1873 |
| HpyCH4IV | ACGT | 3 cut(s) | 700, 1337, 3079 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 36, 66, 245, 251, 254, 263, 1724, 3184 |
| HpySE526I | ACGT | 3 cut(s) | 700, 1337, 3079 |
| HspAI | GCGC | 3 cut(s) | 239, 1820, 3252 |
| Ksp22I | TGATCA | 2 cut(s) | 3138, 3291 |
| LguI | GCTCTTC | 1 cut(s) | 711 |
| LmnI | GCTCC | 7 cut(s) | 85, 179, 345, 430, 1910, 2168, 2865 |
| LweI | GCATC | 7 cut(s) | 555, 643, 970, 1546, 1618, 2140, 2800 |
| MabI | ACCWGGT | 1 cut(s) | 3332 |
| MaeI | CTAG | 9 cut(s) | 90, 663, 932, 1190, 1497, 1971, 2921, 2927, 3347 |
| MaeII | ACGT | 3 cut(s) | 700, 1337, 3079 |
| MaeIII | GTNAC | 4 cut(s) | 1295, 1784, 2123, 2546 |
| MflI | RGATCY | 6 cut(s) | 667, 1529, 1696, 2732, 2821, 3124 |
| MhlI | GDGCHC | 8 cut(s) | 82, 335, 706, 1217, 1915, 3112, 3243, 3250 |
| MlyI | GAGTC | 2 cut(s) | 779, 2635 |
| MmeI | TCCRAC | 2 cut(s) | 3299, 3318 |
| Mph1103I | ATGCAT | 2 cut(s) | 570, 748 |
| MslI | CAYNNNNRTG | 4 cut(s) | 617, 1460, 2289, 2621 |
| MspA1I | CMGCKG | 3 cut(s) | 251, 1243, 1748 |
| MspI | CCGG | 3 cut(s) | 135, 227, 236 |
| MspR9I | CCNGG | 8 cut(s) | 227, 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| Mva1269I | GAATGC | 2 cut(s) | 1668, 2296 |
| MvaI | CCWGG | 7 cut(s) | 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| MvnI | CGCG | 3 cut(s) | 241, 2140, 3252 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 36, 66, 245, 251, 254, 263, 1724, 3184 |
| NciI | CCSGG | 1 cut(s) | 227 |
| NlaIV | GGNNCC | 4 cut(s) | 108, 133, 234, 720 |
| NmeAIII | GCCGAG | 1 cut(s) | 1288 |
| NmuCI | GTSAC | 3 cut(s) | 1295, 2123, 2546 |
| NsiI | ATGCAT | 2 cut(s) | 570, 748 |
| NspI | RCATGY | 2 cut(s) | 1111, 2609 |
| NspV | TTCGAA | 1 cut(s) | 2162 |
| OliI | CACNNNNGTG | 1 cut(s) | 1460 |
| PaeR7I | CTCGAG | 1 cut(s) | 767 |
| PagI | TCATGA | 3 cut(s) | 544, 1222, 1477 |
| PaqCI | CACCTGC | 1 cut(s) | 2681 |
| PciSI | GCTCTTC | 1 cut(s) | 711 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1343 |
| PctI | GAATGC | 2 cut(s) | 1668, 2296 |
| PfeI | GAWTC | 6 cut(s) | 10, 920, 1195, 1256, 1415, 3000 |
| PflFI | GACNNNGTC | 1 cut(s) | 2129 |
| PfoI | TCCNGGA | 2 cut(s) | 1312, 1833 |
| PleI | GAGTC | 2 cut(s) | 778, 2634 |
| PmaCI | CACGTG | 1 cut(s) | 3080 |
| PmlI | CACGTG | 1 cut(s) | 3080 |
| PpsI | GAGTC | 2 cut(s) | 778, 2634 |
| Ppu21I | YACGTR | 1 cut(s) | 3080 |
| PpuMI | RGGWCCY | 1 cut(s) | 2200 |
| PshBI | ATTAAT | 1 cut(s) | 2502 |
| Psp124BI | GAGCTC | 1 cut(s) | 335 |
| Psp5II | RGGWCCY | 1 cut(s) | 2200 |
| Psp6I | CCWGG | 7 cut(s) | 1312, 1833, 1891, 1943, 2357, 2656, 3332 |
| PspCI | CACGTG | 1 cut(s) | 3080 |
| PspFI | CCCAGC | 2 cut(s) | 895, 1718 |
| PspGI | CCWGG | 7 cut(s) | 1312, 1833, 1891, 1943, 2357, 2656, 3332 |
| PspN4I | GGNNCC | 4 cut(s) | 108, 133, 234, 720 |
| PspPI | GGNCC | 5 cut(s) | 106, 801, 1831, 2069, 2200 |
| PspPPI | RGGWCCY | 1 cut(s) | 2200 |
| PspXI | VCTCGAGB | 1 cut(s) | 767 |
| PstI | CTGCAG | 5 cut(s) | 250, 259, 800, 831, 862 |
| PstNI | CAGNNNCTG | 3 cut(s) | 254, 916, 2696 |
| PsuI | RGATCY | 6 cut(s) | 667, 1529, 1696, 2732, 2821, 3124 |
| PsyI | GACNNNGTC | 1 cut(s) | 2129 |
| PvuII | CAGCTG | 2 cut(s) | 1243, 1748 |
| RsaI | GTAC | 9 cut(s) | 813, 864, 1468, 1875, 2086, 2638, 2817, 3094, 3345 |
| RsaNI | GTAC | 9 cut(s) | 812, 863, 1467, 1874, 2085, 2637, 2816, 3093, 3344 |
| RseI | CAYNNNNRTG | 4 cut(s) | 617, 1460, 2289, 2621 |
| SacI | GAGCTC | 1 cut(s) | 335 |
| SalI | GTCGAC | 1 cut(s) | 1119 |
| SapI | GCTCTTC | 1 cut(s) | 711 |
| Sau96I | GGNCC | 5 cut(s) | 106, 801, 1831, 2069, 2200 |
| ScaI | AGTACT | 2 cut(s) | 813, 3345 |
| SchI | GAGTC | 2 cut(s) | 779, 2635 |
| ScrFI | CCNGG | 8 cut(s) | 227, 1314, 1835, 1893, 1945, 2359, 2658, 3334 |
| SduI | GDGCHC | 8 cut(s) | 82, 335, 706, 1217, 1915, 3112, 3243, 3250 |
| SexAI | ACCWGGT | 1 cut(s) | 3332 |
| SfaNI | GCATC | 7 cut(s) | 555, 643, 970, 1546, 1618, 2140, 2800 |
| SfcI | CTRYAG | 7 cut(s) | 246, 255, 796, 827, 858, 1129, 2778 |
| Sfr274I | CTCGAG | 1 cut(s) | 767 |
| SfuI | TTCGAA | 1 cut(s) | 2162 |
| SinI | GGWCC | 4 cut(s) | 106, 1831, 2069, 2200 |
| SlaI | CTCGAG | 1 cut(s) | 767 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 617, 1460, 2289, 2621 |
| SmlI | CTYRAG | 2 cut(s) | 767, 2675 |
| SmoI | CTYRAG | 2 cut(s) | 767, 2675 |
| SsiI | CCGC | 8 cut(s) | 213, 251, 1260, 1350, 1549, 1734, 2138, 3004 |
| SspI | AATATT | 1 cut(s) | 2724 |
| SspMI | CTAG | 9 cut(s) | 90, 663, 932, 1190, 1497, 1971, 2921, 2927, 3347 |
| SstI | GAGCTC | 1 cut(s) | 335 |
| StyD4I | CCNGG | 8 cut(s) | 225, 1312, 1833, 1891, 1943, 2357, 2656, 3332 |
| StyI | CCWWGG | 4 cut(s) | 124, 150, 1535, 2736 |
| TaaI | ACNGT | 4 cut(s) | 816, 973, 1133, 1873 |
| TaiI | ACGT | 3 cut(s) | 703, 1340, 3082 |
| TaqI | TCGA | 7 cut(s) | 647, 768, 1120, 2162, 2245, 2719, 3357 |
| TaqII | GACCGA | 1 cut(s) | 188 |
| TatI | WGTACW | 6 cut(s) | 811, 862, 1466, 2636, 3092, 3343 |
| TauI | GCSGC | 1 cut(s) | 254 |
| TfiI | GAWTC | 6 cut(s) | 10, 920, 1195, 1256, 1415, 3000 |
| TscAI | CASTG | 7 cut(s) | 1138, 1178, 1516, 1567, 2291, 2558, 3248 |
| TseFI | GTSAC | 3 cut(s) | 1295, 2123, 2546 |
| Tsp45I | GTSAC | 3 cut(s) | 1295, 2123, 2546 |
| TspGWI | ACGGA | 3 cut(s) | 33, 166, 1450 |
| TspRI | CASTG | 7 cut(s) | 1138, 1178, 1516, 1567, 2291, 2558, 3248 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2129 |
| VneI | GTGCAC | 1 cut(s) | 3239 |
| VpaK11BI | GGWCC | 4 cut(s) | 106, 1831, 2069, 2200 |
| VspI | ATTAAT | 1 cut(s) | 2502 |
| XceI | RCATGY | 2 cut(s) | 1111, 2609 |
| XhoI | CTCGAG | 1 cut(s) | 767 |
| XmiI | GTMKAC | 3 cut(s) | 1104, 1120, 3266 |
| XspI | CTAG | 9 cut(s) | 90, 663, 932, 1190, 1497, 1971, 2921, 2927, 3347 |
| ZrmI | AGTACT | 2 cut(s) | 813, 3345 |
| Zsp2I | ATGCAT | 2 cut(s) | 570, 748 |