Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004457

Physical Location & Seq

Genomic Coordinates Forward (+)

62555723 .. 62570933

Gene Structure 15211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG369700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2829 bp

ATGGAACATCATGAAGTAATGGTGAAGGGGATGCATTTGGTCAGGGAATTGGAGAAAGACTTAAAAGTTGCGAATGTCATTTGCATGAATGGAAGACGGCATCTTACTTCATCGAGAAATGAGGTTTCTAGGGATCTGATCGTAAATTCCTATTCCAAGAAGAAACATGCTCTTCTGGACATGGTTCCAGTTTTGACTGAGCTTCGTCATGCGTTAGAAATGCAATCCGAACTCGAGTCTCTTGTTGAGGAAGGAAATTACTGCAGGGCCTTTCAAGTACTGTCTGAGTATCTGCAGCTATTAGATAGTTTCTCAGAACTATCTGCAGTACAAGAGATGAGCCGTGGAGTTGAGGTTTGGCTGGGACAAACTCTTCAGAAGCTGGATTCCTTGTTGCTAGGAGTGTGCCAGAAATTCAATGAGGAGGGCTATATAACTGTGGTTGATGCGTATGCTCTAATTGGGGACATCTCTGGTCTTGCTGAGAAGATACAAAGTTACTTTATGCAGGAAGTTCTCTCAGAAACCCATTCTATATTGAAGACCATTGTGCAAGAGGATCAGGAAGTAGACATGCAAAATAGTCGACTTACCTACAGTGATCTATGCCGTCAGATACCTGAACCTAAGTTTAGGCAGTGTTTGTTAAATACACTAGCGATTCTATTCAAGTTGATGTGCTCATATCATGAAATCATGGCCTTTCAGCTGGATGATAAGGATTCGGCTGAGAAAACTTCAAGCATTGAGCCAGAGGAAAGTGACATCTCTCAAATTCCAGGAGGCGTTCAGAACATTTCAACGTCTTTCTCGTCCGCAAAAGCTAATGGCTCTCTCTTGGAATGTGTAGATGTAATAGCAGGTTCATCTTCTATGGAGGAATCTCATACCAACTCTTCCACCGAGCCTATGGGAAACACCACTTCCGTGTGTACAACATCTCATGATTTAGTTGATGAGGCTAGGATGGATGGCAGTGCTGCGTCAACAAGTGGGTCTCCTTGGTATCAACTGCGGAAAGATGCCACTGCATTTGTTTCACAAACCCTTCAAAGAGGACGCAAAAATCTCTGGCATCTCACAACTACTCGTGTATCAGTCTTGCTTTCTTCTGCTTCTGTATCTTCTGCCAGCATTCACCAATTCTTGAAAAATTATGAAGATCTGAGTGCCTTCATCTTGGCTGGGGAAGCATTTTGCGGAATTGAAGCAGCTGACTTCAGGCAGAAGTTGAAGGCAGTTTGTGAAAGTTACTTTTTAGCTTTTCATCGGCAGAATATCTTTGCGCTCAAAATGGTCCTGGAAAAAGAACTTTGGTTAATCATGCCACCTGATACGGTACAAGAAATTACCTTTCCTGGGCTTGTTGGTGATGGAGCACCTTTAATTATTCCATCTAATAGTAAGTCCAGGGTGCTACTTTCTGATAAGTCTGCTAGATTGGTTGATACTGGTGTCAAGAAGAGTGGTTTTTCTATTTGGATAAAAAATGGAAACCCTTTTGCGTTAAAACTGCCACACTCTTCCAAAGAAGGTCCAAAAGGGAATGGTACAACTTCTGGTGAATTTGATGGAAATTTTAGTGAAGGTGACAAAGTCTCTCCACGAAAGAGTGATGCCAATCATTCGAATGGTGCTAATTCTGTTTCGGAAGACGAAAATGAGGACCTTCTTGCAGACTTTATTGATGAGGATAGTCAACTCCCGAGTCGAATTTCAAAACCGAAACACCCGAGAAGCCAATCTTCACACTGGAATGCTGGAGAGCTAATAGCCCAAACAGGATCGTCTATTTGCCTTCTAAGGTCAATGGATAAATATGCCAGGCTAATGCAGAAATTAGATATAGTCAATGTGGAGTTCTTCAAGGGGATATGCCAGTTGTTTGAGATATTCTTTCATTTTGTATTTGAAACATTTGCTCAGCAAAATAGCAACTCTGGTGGAAAAGGCTCATCTGACCCGATTAATTATCGCCTGAAGACAGCATTGTCCAGAATACAACAAGATTGTGACCAGTGGATGAAGCCCTCATCATCTTCCCCCACATCTTTGAATTCACCATTTACACATGCAGATATCACACCTATGAGTCCTTCCAGTACAAATTTTGGTGGCACACCTGGAACATCTTTTGGTCTCAAGGAAAGATGTGCAGGTGCTGATACTCTCTCTCTCGTTGCTCGAATATTGCATAGATCCAAGGCTCATCTCCAGACAATGCTTTTTCAGAAAAATGCTGCTGTAGTTGAAGATTTCTATGTGAATTTGGTGGATGCTGTACCAGATCTTATAGAGCAAATTCATAGGACAACTGCAAGATTGCTCCTCCATATTAACGGGTATGTTGATCGGATTGCCAATGCAAAATGGGAAGTCAAAGAACTTGGACTCGAACATAATGGGTATGTTGATTTGTTGTTGGGAGAATTTAAGCACTACAAAACAAGGCTTGCTCATGGGGGAATCCGCAAGGAGGTTCAAGATTGCCTCTTAGATTATGGACTGGAAATTGTTGCCCATACTCTTGTAGAAGGTCTATCACGTGTCAAGAGGTGTACTGATGAAGGGAGGGCTCTCATGTCATTGGATCTTCAGGTTTTGATCAATGGGTTACAACATTTTGTCTCCATGAATGTTAAGCCTCATTTGCAAATAGTTGAGGGCTTCATTAAGGCATACTATCTTCCTGAAACTGAATATGTGCACTGGGCACGCGCACACCCTGAGTATACAAAAAATCAAATTGTTGGGTTGATCAATCTGGTTGCCACAATGAAAGGTTGGAAGAGAAAAACTAGGTTGGAAGTACTAGAAAAGATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2451 Vps54_N

Protein Analysis

942

Amino Acids

105.19

Weight (kDa)

5.86

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps54_N	PF10475	1 - 235	6.3e-80	Vacuolar-sorting protein 54, of GARP complex
Syndetin_C	PF10474	712 - 942	2.7e-76	Syndetin, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27900 AT2G27900
fragaria_vesca	FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380
malus_domestica	MD03G1129700.v1.1 MD11G1151500.v1.1
prunus_persica	Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1
pyrus_communis	pycom11g12360
rosa_chinensis	RchiOBHm_Chr5g0056331
rosa_laevigata	RLG00000035088
rosa_multiflora	Rmu_sc0000317.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023990 Rroxscaffold_1G00027590
rosa_rugosa	Rorug05G0298900 Rorug05G0299000 Rorug05G0299000
rosa_samantha	Rh5AG369700 Rh5BG380700 Rh5CG404100 Rh5DG393900
rosa_wichuraiana	Rw0G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2147
AasI	GACNNNNNNGTC	1 cut(s)	1990
Acc36I	ACCTGC	2 cut(s)	851, 2147
AccI	GTMKAC	3 cut(s)	570, 586, 2732
AccII	CGCG	1 cut(s)	2718
AciI	CCGC	4 cut(s)	816, 1015, 1200, 2470
AclWI	GGATC	5 cut(s)	141, 567, 1792, 2193, 2598
AcuI	CTGAAG	4 cut(s)	359, 1204, 2000, 2579
AcvI	CACGTG	1 cut(s)	2546
AfaI	GTAC	9 cut(s)	279, 330, 934, 1341, 1552, 2104, 2283, 2560, 2811
AfiI	CCNNNNNNNGG	2 cut(s)	1359, 2476
AflIII	ACRYGT	1 cut(s)	2545
AjnI	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
AleI	CACNNNNGTG	1 cut(s)	926
AluBI	AGCT	8 cut(s)	202, 298, 382, 709, 824, 1214, 1262, 1768
AluI	AGCT	8 cut(s)	202, 298, 382, 709, 824, 1214, 1262, 1768
Alw21I	GWGCWC	3 cut(s)	683, 1381, 2709
Alw26I	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2632
Alw44I	GTGCAC	1 cut(s)	2705
AlwI	GGATC	5 cut(s)	141, 567, 1792, 2193, 2598
AlwNI	CAGNNNCTG	2 cut(s)	382, 2162
Ama87I	CYCGRG	3 cut(s)	233, 1705, 1732
AoxI	GGCC	2 cut(s)	267, 699
ApaLI	GTGCAC	1 cut(s)	2705
ApeKI	GCWGC	4 cut(s)	295, 980, 1211, 2240
AseI	ATTAAT	1 cut(s)	1968
AspLEI	GCGC	2 cut(s)	1288, 2720
AspS9I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
AsuHPI	GGTGA	6 cut(s)	34, 1130, 1382, 1574, 1601, 2052
AsuII	TTCGAA	1 cut(s)	1628
AvaI	CYCGRG	3 cut(s)	233, 1705, 1732
AvaII	GGWCC	3 cut(s)	1297, 1535, 1666
BaeGI	GKGCMC	2 cut(s)	2709, 2716
BaeI	ACNNNNGTAYC	4 cut(s)	1077, 1110, 1440, 1473
BanII	GRGCYC	1 cut(s)	2578
BauI	CACGAG	1 cut(s)	1089
BbrPI	CACGTG	1 cut(s)	2546
BbsI	GAAGAC	4 cut(s)	100, 548, 1659, 1988
Bbv12I	GWGCWC	3 cut(s)	683, 1381, 2709
BbvI	GCAGC	4 cut(s)	307, 967, 1223, 2227
BccI	CCATC	5 cut(s)	961, 965, 1367, 1402, 1565
BceAI	ACGGC	3 cut(s)	113, 327, 594
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BclI	TGATCA	2 cut(s)	2604, 2757
BcoDI	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2632
BfaI	CTAG	7 cut(s)	129, 398, 656, 963, 1437, 2799, 2813
BfmI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2244
BfuAI	ACCTGC	2 cut(s)	851, 2147
BglII	AGATCT	2 cut(s)	1162, 2287
BisI	GCNGC	4 cut(s)	296, 981, 1212, 2241
BlpI	GCTNAGC	1 cut(s)	1923
BlsI	GCNGC	4 cut(s)	297, 982, 1213, 2242
BmcAI	AGTACT	2 cut(s)	279, 2811
Bme1390I	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
Bme18I	GGWCC	3 cut(s)	1297, 1535, 1666
BmeT110I	CYCGRG	3 cut(s)	233, 1705, 1732
BmgT120I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BmrI	ACTGGG	1 cut(s)	2719
BmsI	GCATC	7 cut(s)	21, 109, 436, 1012, 1084, 1606, 2266
BmuI	ACTGGG	1 cut(s)	2719
BpiI	GAAGAC	4 cut(s)	100, 548, 1659, 1988
BpmI	CTGGAG	2 cut(s)	1782, 2198
Bpu1102I	GCTNAGC	1 cut(s)	1923
Bpu14I	TTCGAA	1 cut(s)	1628
BpuEI	CTTGAG	1 cut(s)	2126
BsaAI	YACGTR	1 cut(s)	2546
BsaBI	GATNNNNATC	1 cut(s)	1620
BsaI	GGTCTC	2 cut(s)	1002, 2144
BsaJI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2202
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	1359, 2476
Bse1I	ACTGG	8 cut(s)	188, 1456, 1757, 1879, 2017, 2100, 2511, 2714
Bse8I	GATNNNNATC	1 cut(s)	1620
BseBI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BseDI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2202
BseGI	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2281
BseJI	GATNNNNATC	1 cut(s)	1620
BseLI	CCNNNNNNNGG	2 cut(s)	1359, 2476
BseMII	CTCAG	9 cut(s)	189, 276, 327, 474, 534, 720, 1157, 1937, 2718
BseNI	ACTGG	8 cut(s)	188, 1456, 1757, 1879, 2017, 2100, 2511, 2714
BseRI	GAGGAG	2 cut(s)	437, 2318
BseSI	GKGCMC	2 cut(s)	2709, 2716
BseXI	GCAGC	4 cut(s)	307, 967, 1223, 2227
BseYI	CCCAGC	2 cut(s)	361, 1184
BsgI	GTGCAG	1 cut(s)	2175
Bsh1236I	CGCG	1 cut(s)	2718
BshFI	GGCC	2 cut(s)	269, 701
BsiHKAI	GWGCWC	3 cut(s)	683, 1381, 2709
BsiHKCI	CYCGRG	3 cut(s)	233, 1705, 1732
BslFI	GGGAC	2 cut(s)	378, 479
BslI	CCNNNNNNNGG	2 cut(s)	1359, 2476
BsmAI	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2632
BsmFI	GGGAC	2 cut(s)	378, 479
BsmI	GAATGC	2 cut(s)	1134, 1762
BsnI	GGCC	2 cut(s)	269, 701
Bso31I	GGTCTC	2 cut(s)	1002, 2144
BsoBI	CYCGRG	3 cut(s)	233, 1705, 1732
Bsp119I	TTCGAA	1 cut(s)	1628
Bsp1286I	GDGCHC	5 cut(s)	683, 1381, 2578, 2709, 2716
Bsp1407I	TGTACA	1 cut(s)	932
Bsp1720I	GCTNAGC	1 cut(s)	1923
BspACI	CCGC	4 cut(s)	816, 1015, 1200, 2470
BspANI	GGCC	2 cut(s)	269, 701
BspCNI	CTCAG	9 cut(s)	190, 277, 326, 475, 533, 721, 1158, 1936, 2719
BspFNI	CGCG	1 cut(s)	2718
BspHI	TCATGA	3 cut(s)	10, 688, 943
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	3 cut(s)	266, 297, 328
BspMI	ACCTGC	2 cut(s)	851, 2147
BspPI	GGATC	5 cut(s)	141, 567, 1792, 2193, 2598
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	1628
BspTNI	GGTCTC	2 cut(s)	1002, 2144
BsrGI	TGTACA	1 cut(s)	932
BsrI	ACTGG	8 cut(s)	188, 1456, 1757, 1879, 2017, 2100, 2511, 2714
BssECI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2202
BssNAI	GTATAC	1 cut(s)	2733
BssSI	CACGAG	1 cut(s)	1089
BssT1I	CCWWGG	2 cut(s)	1001, 2202
Bst1107I	GTATAC	1 cut(s)	2733
Bst2BI	CACGAG	1 cut(s)	1089
Bst2UI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
Bst4CI	ACNGT	4 cut(s)	282, 439, 599, 1339
Bst6I	CTCTTC	6 cut(s)	177, 378, 901, 1457, 1528, 2783
BstAUI	TGTACA	1 cut(s)	932
BstBAI	YACGTR	1 cut(s)	2546
BstBI	TTCGAA	1 cut(s)	1628
BstC8I	GCNNGC	3 cut(s)	1132, 2454, 2716
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2281
BstFNI	CGCG	1 cut(s)	2718
BstHHI	GCGC	2 cut(s)	1288, 2720
BstMAI	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2632
BstMWI	GCNNNNNNNGC	2 cut(s)	1190, 2650
BstNI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BstNSI	RCATGY	3 cut(s)	170, 577, 2075
BstSCI	CCNGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
BstSFI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2244
BstSLI	GKGCMC	2 cut(s)	2709, 2716
BstUI	CGCG	1 cut(s)	2718
BstV1I	GCAGC	4 cut(s)	307, 967, 1223, 2227
BstV2I	GAAGAC	4 cut(s)	100, 548, 1659, 1988
BstX2I	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
BstYI	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
BstZ17I	GTATAC	1 cut(s)	2733
BsuRI	GGCC	2 cut(s)	269, 701
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2281
BtsI	GCAGTG	3 cut(s)	644, 982, 1026
BtsIMutI	CAGTG	7 cut(s)	604, 644, 982, 1026, 1750, 2024, 2707
BveI	ACCTGC	2 cut(s)	851, 2147
Cac8I	GCNNGC	3 cut(s)	1132, 2454, 2716
CaiI	CAGNNNCTG	2 cut(s)	382, 2162
CciI	TCATGA	3 cut(s)	10, 688, 943
CfoI	GCGC	2 cut(s)	1288, 2720
Cfr13I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
CseI	GACGC	2 cut(s)	972, 1068
Csp6I	GTAC	9 cut(s)	278, 329, 933, 1340, 1551, 2103, 2282, 2559, 2810
CspCI	CAANNNNNGTGG	6 cut(s)	1015, 1050, 1447, 1482, 1924, 1959
CviQI	GTAC	9 cut(s)	278, 329, 933, 1340, 1551, 2103, 2282, 2559, 2810
DrdI	GACNNNNNNGTC	1 cut(s)	1990
DseDI	GACNNNNNNGTC	1 cut(s)	1990
Eam1104I	CTCTTC	6 cut(s)	177, 378, 901, 1457, 1528, 2783
EarI	CTCTTC	6 cut(s)	177, 378, 901, 1457, 1528, 2783
Eco130I	CCWWGG	2 cut(s)	1001, 2202
Eco24I	GRGCYC	1 cut(s)	2578
Eco31I	GGTCTC	2 cut(s)	1002, 2144
Eco32I	GATATC	1 cut(s)	2080
Eco47I	GGWCC	3 cut(s)	1297, 1535, 1666
Eco57I	CTGAAG	4 cut(s)	359, 1204, 2000, 2579
Eco72I	CACGTG	1 cut(s)	2546
Eco88I	CYCGRG	3 cut(s)	233, 1705, 1732
EcoO109I	RGGNCCY	2 cut(s)	267, 1666
EcoRI	GAATTC	1 cut(s)	2056
EcoRII	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
EcoRV	GATATC	1 cut(s)	2080
EcoT14I	CCWWGG	2 cut(s)	1001, 2202
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	2578
ErhI	CCWWGG	2 cut(s)	1001, 2202
FalI	AAGNNNNNCTT	2 cut(s)	1729, 1761
FaqI	GGGAC	2 cut(s)	378, 479
FbaI	TGATCA	2 cut(s)	2604, 2757
FblI	GTMKAC	3 cut(s)	570, 586, 2732
Fnu4HI	GCNGC	4 cut(s)	296, 981, 1212, 2241
FokI	GGATG	6 cut(s)	43, 725, 979, 983, 2035, 2288
FriOI	GRGCYC	1 cut(s)	2578
Fsp4HI	GCNGC	4 cut(s)	296, 981, 1212, 2241
FspBI	CTAG	7 cut(s)	129, 398, 656, 963, 1437, 2799, 2813
GlaI	GCGC	2 cut(s)	1287, 2719
GluI	GCNGC	4 cut(s)	296, 981, 1212, 2241
GsaI	CCCAGC	2 cut(s)	365, 1188
GsuI	CTGGAG	2 cut(s)	1782, 2198
HaeIII	GGCC	2 cut(s)	269, 701
HgaI	GACGC	2 cut(s)	972, 1068
HhaI	GCGC	2 cut(s)	1288, 2720
Hin6I	GCGC	2 cut(s)	1286, 2718
HinP1I	GCGC	2 cut(s)	1286, 2718
HincII	GTYRAC	3 cut(s)	587, 987, 1700
HindII	GTYRAC	3 cut(s)	587, 987, 1700
HinfI	GANTC	9 cut(s)	236, 386, 661, 722, 881, 1708, 2092, 2391, 2466
HphI	GGTGA	6 cut(s)	34, 1130, 1382, 1574, 1601, 2052
Hpy166II	GTNNAC	8 cut(s)	571, 587, 933, 987, 1700, 2559, 2707, 2733
Hpy8I	GTNNAC	8 cut(s)	571, 587, 933, 987, 1700, 2559, 2707, 2733
HpyCH4III	ACNGT	4 cut(s)	282, 439, 599, 1339
HpyCH4IV	ACGT	2 cut(s)	803, 2545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1190, 2650
HpySE526I	ACGT	2 cut(s)	803, 2545
HspAI	GCGC	2 cut(s)	1286, 2718
Ksp22I	TGATCA	2 cut(s)	2604, 2757
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	1376, 2331
Lsp1109I	GCAGC	4 cut(s)	307, 967, 1223, 2227
LweI	GCATC	7 cut(s)	21, 109, 436, 1012, 1084, 1606, 2266
MaeI	CTAG	7 cut(s)	129, 398, 656, 963, 1437, 2799, 2813
MaeII	ACGT	2 cut(s)	803, 2545
MaeIII	GTNAC	6 cut(s)	497, 761, 1250, 1589, 2012, 2613
MflI	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
MhlI	GDGCHC	5 cut(s)	683, 1381, 2578, 2709, 2716
MlyI	GAGTC	4 cut(s)	245, 1717, 2101, 2385
MmeI	TCCRAC	2 cut(s)	2765, 2784
Mph1103I	ATGCAT	1 cut(s)	36
MslI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2087
MspA1I	CMGCKG	2 cut(s)	709, 1214
MspR9I	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
Mva1269I	GAATGC	2 cut(s)	1134, 1762
MvaI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
MvnI	CGCG	1 cut(s)	2718
MwoI	GCNNNNNNNGC	2 cut(s)	1190, 2650
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	3 cut(s)	761, 1589, 2012
NsiI	ATGCAT	1 cut(s)	36
NspI	RCATGY	3 cut(s)	170, 577, 2075
NspV	TTCGAA	1 cut(s)	1628
OliI	CACNNNNGTG	1 cut(s)	926
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	3 cut(s)	10, 688, 943
PaqCI	CACCTGC	1 cut(s)	2147
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PctI	GAATGC	2 cut(s)	1134, 1762
PfeI	GAWTC	5 cut(s)	386, 661, 722, 881, 2466
PflFI	GACNNNGTC	1 cut(s)	1595
PfoI	TCCNGGA	2 cut(s)	778, 1299
PkrI	GCNGC	4 cut(s)	297, 982, 1213, 2242
PleI	GAGTC	4 cut(s)	244, 1716, 2100, 2385
PmaCI	CACGTG	1 cut(s)	2546
PmlI	CACGTG	1 cut(s)	2546
PpsI	GAGTC	4 cut(s)	244, 1716, 2100, 2385
Ppu21I	YACGTR	1 cut(s)	2546
PpuMI	RGGWCCY	1 cut(s)	1666
PshBI	ATTAAT	1 cut(s)	1968
Psp5II	RGGWCCY	1 cut(s)	1666
Psp6I	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
PspCI	CACGTG	1 cut(s)	2546
PspFI	CCCAGC	2 cut(s)	361, 1184
PspGI	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	4 cut(s)	267, 1297, 1535, 1666
PspPPI	RGGWCCY	1 cut(s)	1666
PspXI	VCTCGAGB	1 cut(s)	233
PstI	CTGCAG	3 cut(s)	266, 297, 328
PstNI	CAGNNNCTG	2 cut(s)	382, 2162
PsuI	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
PsyI	GACNNNGTC	1 cut(s)	1595
PvuII	CAGCTG	2 cut(s)	709, 1214
RsaI	GTAC	9 cut(s)	279, 330, 934, 1341, 1552, 2104, 2283, 2560, 2811
RsaNI	GTAC	9 cut(s)	278, 329, 933, 1340, 1551, 2103, 2282, 2559, 2810
RseI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2087
SalI	GTCGAC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	4 cut(s)	296, 981, 1212, 2241
Sau96I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
ScaI	AGTACT	2 cut(s)	279, 2811
SchI	GAGTC	4 cut(s)	245, 1717, 2101, 2385
ScrFI	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
SduI	GDGCHC	5 cut(s)	683, 1381, 2578, 2709, 2716
SfaNI	GCATC	7 cut(s)	21, 109, 436, 1012, 1084, 1606, 2266
SfcI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2244
Sfr274I	CTCGAG	1 cut(s)	233
SfuI	TTCGAA	1 cut(s)	1628
SinI	GGWCC	3 cut(s)	1297, 1535, 1666
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2087
SmlI	CTYRAG	2 cut(s)	233, 2141
SmoI	CTYRAG	2 cut(s)	233, 2141
SsiI	CCGC	4 cut(s)	816, 1015, 1200, 2470
SspI	AATATT	1 cut(s)	2190
SspMI	CTAG	7 cut(s)	129, 398, 656, 963, 1437, 2799, 2813
StyD4I	CCNGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
StyI	CCWWGG	2 cut(s)	1001, 2202
TaaI	ACNGT	4 cut(s)	282, 439, 599, 1339
TaiI	ACGT	2 cut(s)	806, 2548
TaqI	TCGA	8 cut(s)	113, 234, 586, 1628, 1711, 2185, 2394, 2823
TatI	WGTACW	6 cut(s)	277, 328, 932, 2102, 2558, 2809
TfiI	GAWTC	5 cut(s)	386, 661, 722, 881, 2466
TscAI	CASTG	7 cut(s)	604, 644, 982, 1033, 1757, 2024, 2714
TseFI	GTSAC	3 cut(s)	761, 1589, 2012
TseI	GCWGC	4 cut(s)	295, 980, 1211, 2240
Tsp45I	GTSAC	3 cut(s)	761, 1589, 2012
TspGWI	ACGGA	1 cut(s)	916
TspRI	CASTG	7 cut(s)	604, 644, 982, 1033, 1757, 2024, 2714
Tth111I	GACNNNGTC	1 cut(s)	1595
VneI	GTGCAC	1 cut(s)	2705
VpaK11BI	GGWCC	3 cut(s)	1297, 1535, 1666
VspI	ATTAAT	1 cut(s)	1968
XceI	RCATGY	3 cut(s)	170, 577, 2075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	907
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	3 cut(s)	570, 586, 2732
XspI	CTAG	7 cut(s)	129, 398, 656, 963, 1437, 2799, 2813
ZrmI	AGTACT	2 cut(s)	279, 2811
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.