RchiOBHm_Chr5g0056331

Coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
59960652 .. 59975777
15126 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33323

Sequence Viewer

Length: 3366 bp
ATGCTGCCGAATCTGTCTCCCTTTGGCAGCAATTTGGGCAATCCGTTTTTGTTGAATGGCGATTTGAGCAGCGAGGGTGCTCCTGCTCCTAGCGTTTTGTTCTTGGTCCCGTTTCTCTTGTTCCAAGGACGAACCGGAATGGATTTGTCCAAGGTCGGCGAGAAAATTCTCAGCTCCGTCAGGTCTGCCAGATCACTCGGTCTTCTTCCTCCCGCTTCTGATCGCCCGGAGGTTCCAGCGCGAGCTGCAGCTGCTGCAGTTGTTGCTCGTGCTATTGCGGGACTGCCTCCACATCAAAGATATGGCCTCTCTTCAAGCTCTGAAGAATTGAGCTCAATTTATGGGAGCAGACAACAACATGGTGAAGAAGTGGAGGAGATAGAGGAAGAATTCTATGAAGAGGGTTTTGATCCAGTTAGACATATTTTGGAGCATATTCCTTCTGACGAAAATGAGCTGGCTTATTTTGAGAGACAGGCAGCTCTTAAATTAGCACAACTGGATAGAGTATCAGAACATTTATCCCGAAATGTTATGGAACATCATGAAGTAATGGTGAAGGGGATGCATTTGGTCAGGGAATTGGAGAAAGACTTAAAAGTTGCGAATGTCATTTGCATGAATGGAAGACGGCATCTTACTTCATCGAGAAATGAGGTTTCTAGGGATCTGATCGTAAATTCCTATTCCAAGAAGAAACATGCTCTTCTGGACATGGTTCCAGTTTTGACTGAGCTTCGTCATGCGTTAGAAATGCAATCCGAACTCGAGTCTCTTGTTGAGGAAGGAAATTACTGTAGGGCCTTTCAAGTACTGTCTGAGTATCTGCAGCTATTAGATAGTTTCTCAGAACTATCTGCAGTACAAGAGATGAGCCGTGGAGTTGAGGTTTGGCTGGGACAAACTCTTCAGAAGCTGGATTCCTTGTTGCTAGGAGTGTGCCAGAAATTCAATGAGGAGGGCTATATAACTGTGGTTGATGCGTATGCTCTAATTGGGGACATCTCTGGTCTTGCTGAGAAGATACAAAGTTACTTTATGCAGGAAGTTCTCTCAGAAACCCATTCTATATTGAAGACCATTGTGCAAGAGGATCAGGAAGTAGACATGCAAAATAGTCGACTTACCTACAGTGATCTATGCCGTCAGATACCTGAACCTAAGTTTAGGCAGTGTTTGTTAAATACACTAGAGATTCTATTCAAGTTGATGTGCTCATATCATGAAATCATGGCCTTTCAGCTGGATGATAAGGATTCGGCCGAGAAAACTTCAAGCATTGAGCCAGAGGAAAGTGACATCTCTCAAATTCCAGGAGGCGTTCAGAACATTTCAACGTCTTTCTCGTCCGCAAAAGCTAATGGCTCTCTCTCAGAATGTGTAGATGTAATAGCAGGTTCATCTTCTATGGAGGAATCTCATACCAACTCTTCCACCGAGCCTACGGGAAACACCACTTCCGTGTGTACAACATCTCATGATCTAGTTGATGAGGCTAGGATGGATGGCAGTGCTGCGTCAACAAGTGGGTCTCCTTGGTATCAACTGCGGAAAGATGCCACTGCATTTGTTTCACAAACCCTTCAAAGAGGACGCAAAAATCTCTGGCATCTCACAACTACTCGTGTATCAGTCTTGCTTTCTTCTGCTTCTGTATCTTCTGCCAGCATTCACCAGTTCTTGAAAAATTATGAAGATCTGAGTGCCTTCATCTTGGCTGGGGAAGCATTTTGCGGAATTGAAGCAGCTGACTTCAGGCAGAAGTTGAAGGCAGTTTGTGAAAGTTACTTTTTAGCTTTTCATCGGCAGAATATCTTTGCGCTCAAAATGGTCCTGGAAAGAGAACTTTGGTTAATCATGCCACCTGATACGGTACAAGAAATTACCTTTCCTGGGCTTGTTGGTGATGGAGCACCTTTAATTATTCCATCTAATAGTAAGTCCAGGGTGCTACTTTCTGATAAGTCTGCTAGATTGGTTGATACTGGTGTCAAGAAGAGTGGTTTTTCTATTTGGATAAAAAATGGAAACCCTTTTGCGTTAAAACTGCCACACTCTTCCAAAGAAGGTCCGAAAGGGAATGGTACAACTTCTGGTGAATTTGATGGAAATTTTAGTGAAGGTGACAAGGTCTCTCCACGAAAGAGTGATGCCAATCATTCGAATGGTGCTAATTCTGTTTCGGAAGACGAAAATGAGGACCTTCTTGCAGACTTTATTGATGAGGATAGTCAACTCCCCAGTCGAATTTCAAAACCGAAACACCCGAGAAGCCAATCTTCACACTGGAATGCTGGAGAGCTAATAGCCCAAACAGGATCGTCTATTTGCCTTCTAAGGTCAATGGATAAATATGCCAGGCTAATGCAGAAATTAGATATAGTCAATGTGGAGTTCTTCAAGGGGATATGCCAGTTGTTTGAGGTATTCTTTCATTTTGTATTTGAAACATTTGCTCAGCAAAATAGCAACTCTGGTGGAAAAGGCTCATCTGACCCGATTAATTATCGCCTGAAGACAGCATTGTCCAGAATACAACAAAATTGTGACCAGTGGATGAAGCCCTCATCATCATCTTCCCCCGCATCTTTGAATTCACCATTTACACATGCAGATATCACACCTATGAGTCCTTCCAGTACAAATTTTGGTAGCACACCTGGAACGTCTTTTGGTCTCAAGGAAAGATGTGCTGGTGCTGATACTCTCTCTCTCGTTGCTCGAATATTGCATAGATCCAAGGCTCATCTCCAGACAATGCTTTTTCAGAAAAATGCTGCTGTAGTTGATGATTTCTATGTGAATTTGGTGGATGCTGTACCAGATCTTATAGAGCAAATTCATAGGACAACTGCAAGATTGCTCCTCCATATTAACGGGTATGTTGATCGGATTGCCAATGCAAAATGGGAAGTCAAAGAACTTGGACTCGAACATAATGGGTATGTTGATTTGTTGTTGGGAGAATTTAAGCACTACAAAACAAGGCTTGCTCATGGGGGAATCCGCAAGGAGGTTCAAGATCGCCTCTTAGATTATGGACTGGAAATTGTTGCCCATACTCTTGTAGAAGGTCTATCACGTGTCAAGAGGTGTACTGATGAAGGGAGGGCTCTCATGTCATTGGATCTTCAGGTTTTGATCAATGGGTTACAACATTTTGTCTCCATGAATGTTAAGCCTCATTTGCAAATAGTTGAGGGCTTCATTAAGGCATACTATCTTCCTGAAACTGAATATGTGCACTGGGCACGCGCACACCCTGAGTATACAAAAAATCAAATTGTTGGGTTGATCAATCTGGTTGCCACAATGAAAGGTTGGAAGAGAAAAACTAGGTTGGAAGTACTAGAAAAGATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1121

Amino Acids

124.69

Weight (kDa)

5.69

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps54_N PF10475 124 - 413 4.8e-97 Vacuolar-sorting protein 54, of GARP complex
Syndetin_C PF10474 891 - 1121 1e-75 Syndetin, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2524
Acc36I ACCTGC 1 cut(s) 1385
AccI GTMKAC 3 cut(s) 1104, 1120, 3269
AccII CGCG 2 cut(s) 241, 3255
AciI CCGC 7 cut(s) 213, 278, 1350, 1549, 1734, 2583, 3007
AclWI GGATC 6 cut(s) 404, 675, 1101, 2326, 2730, 3135
AcoI YGGCCR 1 cut(s) 1260
AcuI CTGAAG 5 cut(s) 342, 893, 1738, 2534, 3116
AcvI CACGTG 1 cut(s) 3083
AfaI GTAC 9 cut(s) 813, 864, 1468, 1875, 2086, 2641, 2820, 3097, 3348
AfiI CCNNNNNNNGG 2 cut(s) 1893, 3013
AflIII ACRYGT 1 cut(s) 3082
AjnI CCWGG 6 cut(s) 1312, 1833, 1891, 1943, 2357, 2659
AleI CACNNNNGTG 1 cut(s) 1460
Alw21I GWGCWC 5 cut(s) 82, 335, 1217, 1915, 3246
Alw26I GTCTC 7 cut(s) 21, 466, 777, 1536, 2137, 2681, 3169
Alw44I GTGCAC 1 cut(s) 3242
AlwI GGATC 6 cut(s) 404, 675, 1101, 2326, 2730, 3135
AlwNI CAGNNNCTG 2 cut(s) 254, 916
Ama87I CYCGRG 2 cut(s) 767, 2266
AoxI GGCC 4 cut(s) 304, 801, 1233, 1260
ApaLI GTGCAC 1 cut(s) 3242
AseI ATTAAT 1 cut(s) 2502
AspLEI GCGC 3 cut(s) 241, 1822, 3257
AspS9I GGNCC 5 cut(s) 106, 801, 1831, 2069, 2200
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 7 cut(s) 374, 568, 1664, 1916, 2108, 2135, 2589
AsuII TTCGAA 1 cut(s) 2162
AvaI CYCGRG 2 cut(s) 767, 2266
AvaII GGWCC 4 cut(s) 106, 1831, 2069, 2200
BaeGI GKGCMC 2 cut(s) 3246, 3253
BaeI ACNNNNGTAYC 4 cut(s) 1611, 1644, 1974, 2007
BanII GRGCYC 2 cut(s) 335, 3115
BauI CACGAG 2 cut(s) 267, 1623
BbrPI CACGTG 1 cut(s) 3083
BbsI GAAGAC 5 cut(s) 194, 634, 1082, 2193, 2522
Bbv12I GWGCWC 5 cut(s) 82, 335, 1217, 1915, 3246
BccI CCATC 5 cut(s) 1495, 1499, 1901, 1936, 2099
BceAI ACGGC 3 cut(s) 647, 861, 1128
BcgI CGANNNNNNTGC 2 cut(s) 1100, 1134
BciT130I CCWGG 6 cut(s) 1314, 1835, 1893, 1945, 2359, 2661
BclI TGATCA 2 cut(s) 3141, 3294
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 7 cut(s) 21, 466, 777, 1536, 2137, 2681, 3169
BfaI CTAG 9 cut(s) 90, 663, 932, 1190, 1484, 1497, 1971, 3336, 3350
BfmI CTRYAG 7 cut(s) 246, 255, 796, 827, 858, 1129, 2781
BfuAI ACCTGC 1 cut(s) 1385
BglII AGATCT 2 cut(s) 1696, 2824
BlpI GCTNAGC 1 cut(s) 2457
BmcAI AGTACT 2 cut(s) 813, 3348
Bme1390I CCNGG 7 cut(s) 227, 1314, 1835, 1893, 1945, 2359, 2661
Bme18I GGWCC 4 cut(s) 106, 1831, 2069, 2200
BmeT110I CYCGRG 2 cut(s) 767, 2266
BmgT120I GGNCC 5 cut(s) 106, 801, 1831, 2069, 2200
BmiI GGNNCC 3 cut(s) 108, 234, 720
BmrFI CCNGG 7 cut(s) 227, 1314, 1835, 1893, 1945, 2359, 2661
BmrI ACTGGG 2 cut(s) 2235, 3256
BmsI GCATC 8 cut(s) 555, 643, 970, 1546, 1618, 2140, 2594, 2803
BmuI ACTGGG 2 cut(s) 2235, 3256
BpiI GAAGAC 5 cut(s) 194, 634, 1082, 2193, 2522
BpmI CTGGAG 2 cut(s) 2316, 2735
Bpu1102I GCTNAGC 1 cut(s) 2457
Bpu14I TTCGAA 1 cut(s) 2162
BpuEI CTTGAG 1 cut(s) 2663
BpuMI CCSGG 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 3083
BsaBI GATNNNNATC 1 cut(s) 2154
BsaI GGTCTC 3 cut(s) 1536, 2137, 2681
BsaJI CCNNGG 7 cut(s) 124, 150, 877, 1535, 1892, 1944, 2739
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 2 cut(s) 1893, 3013
Bse8I GATNNNNATC 1 cut(s) 2154
BseBI CCWGG 6 cut(s) 1314, 1835, 1893, 1945, 2359, 2661
BseDI CCNNGG 7 cut(s) 124, 150, 877, 1535, 1892, 1944, 2739
BseGI GGATG 6 cut(s) 570, 1252, 1506, 1510, 2562, 2818
BseJI GATNNNNATC 1 cut(s) 2154
BseLI CCNNNNNNNGG 2 cut(s) 1893, 3013
BseRI GAGGAG 3 cut(s) 389, 971, 2855
BseSI GKGCMC 2 cut(s) 3246, 3253
BseX3I CGGCCG 1 cut(s) 1260
BseYI CCCAGC 2 cut(s) 895, 1718
Bsh1236I CGCG 2 cut(s) 241, 3255
Bsh1285I CGRYCG 1 cut(s) 1263
BshFI GGCC 4 cut(s) 306, 803, 1235, 1262
BsiEI CGRYCG 1 cut(s) 1263
BsiHKAI GWGCWC 5 cut(s) 82, 335, 1217, 1915, 3246
BsiHKCI CYCGRG 2 cut(s) 767, 2266
BsiSI CCGG 2 cut(s) 135, 227
BslFI GGGAC 4 cut(s) 92, 294, 912, 1013
BslI CCNNNNNNNGG 2 cut(s) 1893, 3013
BsmAI GTCTC 7 cut(s) 21, 466, 777, 1536, 2137, 2681, 3169
BsmFI GGGAC 4 cut(s) 92, 294, 912, 1013
BsmI GAATGC 2 cut(s) 1668, 2296
BsnI GGCC 4 cut(s) 306, 803, 1235, 1262
Bso31I GGTCTC 3 cut(s) 1536, 2137, 2681
BsoBI CYCGRG 2 cut(s) 767, 2266
Bsp119I TTCGAA 1 cut(s) 2162
Bsp1286I GDGCHC 7 cut(s) 82, 335, 1217, 1915, 3115, 3246, 3253
Bsp1407I TGTACA 1 cut(s) 1466
Bsp1720I GCTNAGC 1 cut(s) 2457
BspACI CCGC 7 cut(s) 213, 278, 1350, 1549, 1734, 2583, 3007
BspANI GGCC 4 cut(s) 306, 803, 1235, 1262
BspFNI CGCG 2 cut(s) 241, 3255
BspHI TCATGA 3 cut(s) 544, 1222, 1477
BspLI GGNNCC 3 cut(s) 108, 234, 720
BspMAI CTGCAG 4 cut(s) 250, 259, 831, 862
BspMI ACCTGC 1 cut(s) 1385
BspPI GGATC 6 cut(s) 404, 675, 1101, 2326, 2730, 3135
BspQI GCTCTTC 1 cut(s) 711
BspT104I TTCGAA 1 cut(s) 2162
BspTNI GGTCTC 3 cut(s) 1536, 2137, 2681
BsrGI TGTACA 1 cut(s) 1466
BssECI CCNNGG 7 cut(s) 124, 150, 877, 1535, 1892, 1944, 2739
BssNAI GTATAC 1 cut(s) 3270
BssSI CACGAG 2 cut(s) 267, 1623
BssT1I CCWWGG 4 cut(s) 124, 150, 1535, 2739
Bst1107I GTATAC 1 cut(s) 3270
Bst2BI CACGAG 2 cut(s) 267, 1623
Bst2UI CCWGG 6 cut(s) 1314, 1835, 1893, 1945, 2359, 2661
Bst4CI ACNGT 5 cut(s) 797, 816, 973, 1133, 1873
Bst6I CTCTTC 8 cut(s) 316, 393, 711, 912, 1435, 1991, 2062, 3320
BstAPI GCANNNNNTGC 2 cut(s) 254, 263
BstAUI TGTACA 1 cut(s) 1466
BstBAI YACGTR 1 cut(s) 3083
BstBI TTCGAA 1 cut(s) 2162
BstC8I GCNNGC 5 cut(s) 243, 459, 1666, 2991, 3253
BstDSI CCRYGG 1 cut(s) 877
BstF5I GGATG 6 cut(s) 570, 1252, 1506, 1510, 2562, 2818
BstFNI CGCG 2 cut(s) 241, 3255
BstHHI GCGC 3 cut(s) 241, 1822, 3257
BstMAI GTCTC 7 cut(s) 21, 466, 777, 1536, 2137, 2681, 3169
BstMCI CGRYCG 1 cut(s) 1263
BstMWI GCNNNNNNNGC 8 cut(s) 36, 66, 245, 251, 254, 263, 1724, 3187
BstNI CCWGG 6 cut(s) 1314, 1835, 1893, 1945, 2359, 2661
BstNSI RCATGY 3 cut(s) 704, 1111, 2612
BstSCI CCNGG 7 cut(s) 225, 1312, 1833, 1891, 1943, 2357, 2659
BstSFI CTRYAG 7 cut(s) 246, 255, 796, 827, 858, 1129, 2781
BstSLI GKGCMC 2 cut(s) 3246, 3253
BstUI CGCG 2 cut(s) 241, 3255
BstV2I GAAGAC 5 cut(s) 194, 634, 1082, 2193, 2522
BstX2I RGATCY 5 cut(s) 667, 1696, 2735, 2824, 3127
BstYI RGATCY 5 cut(s) 667, 1696, 2735, 2824, 3127
BstZ17I GTATAC 1 cut(s) 3270
BstZI CGGCCG 1 cut(s) 1260
BsuRI GGCC 4 cut(s) 306, 803, 1235, 1262
BtgI CCRYGG 1 cut(s) 877
BtsCI GGATG 6 cut(s) 570, 1252, 1506, 1510, 2562, 2818
BtsI GCAGTG 3 cut(s) 1178, 1516, 1560
BtsIMutI CAGTG 7 cut(s) 1138, 1178, 1516, 1560, 2284, 2558, 3244
BveI ACCTGC 1 cut(s) 1385
Cac8I GCNNGC 5 cut(s) 243, 459, 1666, 2991, 3253
CaiI CAGNNNCTG 2 cut(s) 254, 916
CciI TCATGA 3 cut(s) 544, 1222, 1477
CfoI GCGC 3 cut(s) 241, 1822, 3257
Cfr13I GGNCC 5 cut(s) 106, 801, 1831, 2069, 2200
CseI GACGC 2 cut(s) 1506, 1602
Csp6I GTAC 9 cut(s) 812, 863, 1467, 1874, 2085, 2640, 2819, 3096, 3347
CspCI CAANNNNNGTGG 6 cut(s) 1549, 1584, 1981, 2016, 2458, 2493
CviQI GTAC 9 cut(s) 812, 863, 1467, 1874, 2085, 2640, 2819, 3096, 3347
DrdI GACNNNNNNGTC 1 cut(s) 2524
DseDI GACNNNNNNGTC 1 cut(s) 2524
EaeI YGGCCR 1 cut(s) 1260
EagI CGGCCG 1 cut(s) 1260
Eam1104I CTCTTC 8 cut(s) 316, 393, 711, 912, 1435, 1991, 2062, 3320
EarI CTCTTC 8 cut(s) 316, 393, 711, 912, 1435, 1991, 2062, 3320
Ecl136II GAGCTC 1 cut(s) 333
EclXI CGGCCG 1 cut(s) 1260
Eco130I CCWWGG 4 cut(s) 124, 150, 1535, 2739
Eco24I GRGCYC 2 cut(s) 335, 3115
Eco31I GGTCTC 3 cut(s) 1536, 2137, 2681
Eco32I GATATC 1 cut(s) 2617
Eco47I GGWCC 4 cut(s) 106, 1831, 2069, 2200
Eco52I CGGCCG 1 cut(s) 1260
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 5 cut(s) 342, 893, 1738, 2534, 3116
Eco72I CACGTG 1 cut(s) 3083
Eco88I CYCGRG 2 cut(s) 767, 2266
EcoICRI GAGCTC 1 cut(s) 333
EcoO109I RGGNCCY 2 cut(s) 801, 2200
EcoRI GAATTC 2 cut(s) 389, 2593
EcoRII CCWGG 6 cut(s) 1312, 1833, 1891, 1943, 2357, 2659
EcoRV GATATC 1 cut(s) 2617
EcoT14I CCWWGG 4 cut(s) 124, 150, 1535, 2739
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 2 cut(s) 335, 3115
ErhI CCWWGG 4 cut(s) 124, 150, 1535, 2739
FalI AAGNNNNNCTT 2 cut(s) 2263, 2295
FaqI GGGAC 4 cut(s) 92, 294, 912, 1013
FauI CCCGC 3 cut(s) 220, 271, 2590
FbaI TGATCA 2 cut(s) 3141, 3294
FblI GTMKAC 3 cut(s) 1104, 1120, 3269
FokI GGATG 6 cut(s) 577, 1259, 1513, 1517, 2569, 2825
FriOI GRGCYC 2 cut(s) 335, 3115
FspBI CTAG 9 cut(s) 90, 663, 932, 1190, 1484, 1497, 1971, 3336, 3350
GlaI GCGC 3 cut(s) 240, 1821, 3256
GsaI CCCAGC 2 cut(s) 899, 1722
GsuI CTGGAG 2 cut(s) 2316, 2735
HaeIII GGCC 4 cut(s) 306, 803, 1235, 1262
HapII CCGG 2 cut(s) 135, 227
HgaI GACGC 2 cut(s) 1506, 1602
HhaI GCGC 3 cut(s) 241, 1822, 3257
Hin6I GCGC 3 cut(s) 239, 1820, 3255
HinP1I GCGC 3 cut(s) 239, 1820, 3255
HincII GTYRAC 3 cut(s) 1121, 1521, 2234
HindII GTYRAC 3 cut(s) 1121, 1521, 2234
HinfI GANTC 9 cut(s) 10, 770, 920, 1195, 1256, 1415, 2629, 2928, 3003
HpaII CCGG 2 cut(s) 135, 227
HphI GGTGA 7 cut(s) 374, 568, 1664, 1916, 2108, 2135, 2589
Hpy166II GTNNAC 8 cut(s) 1105, 1121, 1467, 1521, 2234, 3096, 3244, 3270
Hpy8I GTNNAC 8 cut(s) 1105, 1121, 1467, 1521, 2234, 3096, 3244, 3270
HpyCH4III ACNGT 5 cut(s) 797, 816, 973, 1133, 1873
HpyCH4IV ACGT 3 cut(s) 1337, 2666, 3082
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 66, 245, 251, 254, 263, 1724, 3187
HpySE526I ACGT 3 cut(s) 1337, 2666, 3082
HspAI GCGC 3 cut(s) 239, 1820, 3255
Ksp22I TGATCA 2 cut(s) 3141, 3294
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 7 cut(s) 85, 91, 179, 345, 430, 1910, 2868
LweI GCATC 8 cut(s) 555, 643, 970, 1546, 1618, 2140, 2594, 2803
MaeI CTAG 9 cut(s) 90, 663, 932, 1190, 1484, 1497, 1971, 3336, 3350
MaeII ACGT 3 cut(s) 1337, 2666, 3082
MaeIII GTNAC 6 cut(s) 1031, 1295, 1784, 2123, 2546, 3150
MflI RGATCY 5 cut(s) 667, 1696, 2735, 2824, 3127
MhlI GDGCHC 7 cut(s) 82, 335, 1217, 1915, 3115, 3246, 3253
MlyI GAGTC 3 cut(s) 779, 2638, 2922
MmeI TCCRAC 2 cut(s) 3302, 3321
Mph1103I ATGCAT 1 cut(s) 570
MslI CAYNNNNRTG 5 cut(s) 617, 1460, 2163, 2289, 2624
MspA1I CMGCKG 3 cut(s) 251, 1243, 1748
MspI CCGG 2 cut(s) 135, 227
MspR9I CCNGG 7 cut(s) 227, 1314, 1835, 1893, 1945, 2359, 2661
Mva1269I GAATGC 2 cut(s) 1668, 2296
MvaI CCWGG 6 cut(s) 1314, 1835, 1893, 1945, 2359, 2661
MvnI CGCG 2 cut(s) 241, 3255
MwoI GCNNNNNNNGC 8 cut(s) 36, 66, 245, 251, 254, 263, 1724, 3187
NciI CCSGG 1 cut(s) 227
NlaIV GGNNCC 3 cut(s) 108, 234, 720
NmeAIII GCCGAG 1 cut(s) 1288
NmuCI GTSAC 3 cut(s) 1295, 2123, 2546
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 3 cut(s) 704, 1111, 2612
NspV TTCGAA 1 cut(s) 2162
OliI CACNNNNGTG 1 cut(s) 1460
PaeR7I CTCGAG 1 cut(s) 767
PagI TCATGA 3 cut(s) 544, 1222, 1477
PciSI GCTCTTC 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 1343
PctI GAATGC 2 cut(s) 1668, 2296
PfeI GAWTC 6 cut(s) 10, 920, 1195, 1256, 1415, 3003
PflFI GACNNNGTC 1 cut(s) 2129
PfoI TCCNGGA 2 cut(s) 1312, 1833
PleI GAGTC 3 cut(s) 778, 2637, 2922
PmaCI CACGTG 1 cut(s) 3083
PmlI CACGTG 1 cut(s) 3083
PpsI GAGTC 3 cut(s) 778, 2637, 2922
Ppu21I YACGTR 1 cut(s) 3083
PpuMI RGGWCCY 1 cut(s) 2200
PshBI ATTAAT 1 cut(s) 2502
Psp124BI GAGCTC 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 2200
Psp6I CCWGG 6 cut(s) 1312, 1833, 1891, 1943, 2357, 2659
PspCI CACGTG 1 cut(s) 3083
PspFI CCCAGC 2 cut(s) 895, 1718
PspGI CCWGG 6 cut(s) 1312, 1833, 1891, 1943, 2357, 2659
PspN4I GGNNCC 3 cut(s) 108, 234, 720
PspPI GGNCC 5 cut(s) 106, 801, 1831, 2069, 2200
PspPPI RGGWCCY 1 cut(s) 2200
PspXI VCTCGAGB 1 cut(s) 767
PstI CTGCAG 4 cut(s) 250, 259, 831, 862
PstNI CAGNNNCTG 2 cut(s) 254, 916
PsuI RGATCY 5 cut(s) 667, 1696, 2735, 2824, 3127
PsyI GACNNNGTC 1 cut(s) 2129
PvuII CAGCTG 3 cut(s) 251, 1243, 1748
RsaI GTAC 9 cut(s) 813, 864, 1468, 1875, 2086, 2641, 2820, 3097, 3348
RsaNI GTAC 9 cut(s) 812, 863, 1467, 1874, 2085, 2640, 2819, 3096, 3347
RseI CAYNNNNRTG 5 cut(s) 617, 1460, 2163, 2289, 2624
SacI GAGCTC 1 cut(s) 335
SalI GTCGAC 1 cut(s) 1119
SapI GCTCTTC 1 cut(s) 711
Sau96I GGNCC 5 cut(s) 106, 801, 1831, 2069, 2200
ScaI AGTACT 2 cut(s) 813, 3348
SchI GAGTC 3 cut(s) 779, 2638, 2922
ScrFI CCNGG 7 cut(s) 227, 1314, 1835, 1893, 1945, 2359, 2661
SduI GDGCHC 7 cut(s) 82, 335, 1217, 1915, 3115, 3246, 3253
SfaNI GCATC 8 cut(s) 555, 643, 970, 1546, 1618, 2140, 2594, 2803
SfcI CTRYAG 7 cut(s) 246, 255, 796, 827, 858, 1129, 2781
Sfr274I CTCGAG 1 cut(s) 767
SfuI TTCGAA 1 cut(s) 2162
SinI GGWCC 4 cut(s) 106, 1831, 2069, 2200
SlaI CTCGAG 1 cut(s) 767
SmiMI CAYNNNNRTG 5 cut(s) 617, 1460, 2163, 2289, 2624
SmlI CTYRAG 2 cut(s) 767, 2678
SmoI CTYRAG 2 cut(s) 767, 2678
SsiI CCGC 7 cut(s) 213, 278, 1350, 1549, 1734, 2583, 3007
SspI AATATT 1 cut(s) 2727
SspMI CTAG 9 cut(s) 90, 663, 932, 1190, 1484, 1497, 1971, 3336, 3350
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 7 cut(s) 225, 1312, 1833, 1891, 1943, 2357, 2659
StyI CCWWGG 4 cut(s) 124, 150, 1535, 2739
TaaI ACNGT 5 cut(s) 797, 816, 973, 1133, 1873
TaiI ACGT 3 cut(s) 1340, 2669, 3085
TaqI TCGA 8 cut(s) 647, 768, 1120, 2162, 2245, 2722, 2931, 3360
TaqII GACCGA 1 cut(s) 188
TatI WGTACW 6 cut(s) 811, 862, 1466, 2639, 3095, 3346
TfiI GAWTC 6 cut(s) 10, 920, 1195, 1256, 1415, 3003
TscAI CASTG 7 cut(s) 1138, 1178, 1516, 1567, 2291, 2558, 3251
TseFI GTSAC 3 cut(s) 1295, 2123, 2546
Tsp45I GTSAC 3 cut(s) 1295, 2123, 2546
TspGWI ACGGA 3 cut(s) 33, 166, 1450
TspRI CASTG 7 cut(s) 1138, 1178, 1516, 1567, 2291, 2558, 3251
Tth111I GACNNNGTC 1 cut(s) 2129
VneI GTGCAC 1 cut(s) 3242
VpaK11BI GGWCC 4 cut(s) 106, 1831, 2069, 2200
VspI ATTAAT 1 cut(s) 2502
XceI RCATGY 3 cut(s) 704, 1111, 2612
XhoI CTCGAG 1 cut(s) 767
XmiI GTMKAC 3 cut(s) 1104, 1120, 3269
XspI CTAG 9 cut(s) 90, 663, 932, 1190, 1484, 1497, 1971, 3336, 3350
ZrmI AGTACT 2 cut(s) 813, 3348
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.