Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004457

Physical Location & Seq

Genomic Coordinates Forward (+)

60348847 .. 60364115

Gene Structure 15269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG380700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGGAACATCATGAAGTAATGGTGAAGGGGATGCATTTGGTCAGGGAATTGGAGAAAGACTTAAAAGTTGCGAATGTCATTTGCATGAATGGAAGACGGCATCTTACTTCATCGAGAAATGAGGTTTCTAGGGATCTGATCGTAAATTCATATTCCAAGAAGAAACATGCTCTTCTGGACATGGTTCCAGTTTTGACTGAGCTTTGTCATGCGTTAGAAATGCAATCCGAACTCGAGTCTCTTGTTGAGGAAGGAAATTACTGCAGGGCCTTTCAAGTACTGTCTGAGTATCTGCAGCTATTAGATAGTTTCTCAGAACTATCTGCAGTACAAGAGATGAGCCGTGGAGTTGAGGTTTGGCTGGGACAAACTCTTCAGAAGCTGGATTCCTTGTTGCTAGGAGTGTGCCAGAAATTCAATGAGGAGGGCTATATAACTGTGGTTGATGCGTATGCTCTAATTGGGGACATCTCTGGTCTTGCTGAGAAGATACAAAGTTACTTTATGCAGGAAGTTCTCTCAGAAACCCATTCTATATTGAAGACCATTGTGCAAGAGGATCAGGAAGTAGACATGCAAAATAGTCGACTTACCTACAGTGATCTATGCCGTCAGATACCTGAACCTAAGTTTAGGCAGTGTTTGTTAAATACACTAGCGATTCTATTCAAGTTGATGTGCTCATATCATGAAATCATGGCCTTTCAGCTGGATGATAAGGATTCGGCCGAGAAAACTTCAAGCATTGAGCCAGAGGAAAGTGACATCTCTCAAATTCCAGGAGGCGTTCAGAACATTTCAACGTCTTTCTCGTCCGCAAAAGCTAATGGCTCTCTCTCGGAATGTGTAGATGTAATAGCAGGTTCATCTTCTATGGAGGAATCTCATACCAACTCTTCCACCGAGCCTACGGGAAACACCACTTCTGTGTGTACAACATCTCATGATTTAGTTGATGAGGCTAGGATGGATGGCAGTGCTGCGTCAACAAGTGGGTCTCCTTGGTATCAACTGCGGAAAGATGCCACTGCATTTGTTTCACAAACCCTTCAAAGAGGACGCAAAAATCTCTGGCATCTCACAACTACTCGTGTATCAGTCTTGCTTTCTTCTGCTTCTGTATCTTCTGCCAGCATTCACCAATTCTTGAAAAATTATGAAGATCTGAGTGCCTTCATCTTGGCTGGGGAAGCATTTTGCGGAATTGAAGCAGCTGACTTCAGGCAGAAGTTGAAGGCAGTTTGTGAAAGTTACTTTTTAGCTTTTCATCGGCAGAATATCTTTGCGCTCAAAATGGTCCTGGAAAAAGAACTTTGGTTAATCATGCCACCTGATACGGTACAAGAAATTACCTTTCCTGGGCTTGTTGGTGATGGAGCACCTTTAATTATTCCATCTAATAGTAAGTCCAGGGTGCTACTTTCTGACAAGTCTGCTAGATTGGTTGATACTGGTGTCAAGAAGAGTGGTTTTTCTATTTGGATAAAAAATGGAAACCCTTTTGTGTTAAAACTGCCACACTCTTCCAAAGAAGGTCCGAAAGGGAATGGTACAACTTCTGGTGAATTTGATGGAAATTTTAGTGAAGGTGACAAAGTCTCTCCACGAAAGAGTGATGCCAATCATTCGAATGGTGCTAATTCTGTTTCGGAAGACGAAAATGAGGACCTTCTTGCAGACTTTATTGATGAGGATAGTCAACTCCCCAGTCGAATTTCAAAACCGAAACACCCGAGAAGCCAATCTTCACACTGGAATGCTGGAGAGCTAATAGCCCAAACAGGATCATCTATTTGCCTTCTAAGGTCAATGGATAAATATGCCAGGCTAATGCAGAAATTAGATATAGTCAATGTGGAGTTCTTCAAGGGGATATGCCAGTTGTTTGAGGTATTCTTTCATTTTGTATTTGAAACATTTGCTCAGCAAAATAGCAACTCTGGTGGAAAAGGCTCATCTGACCCGATTAATTATCGCCTGAAGACAGCATTGTCCAGAATACAACAAAATTGTGACCAGTGGATGAAGCCCTCATCATCTTCCCCCACATCTTTGAATTCACCATTTACACATGCAGATATCACACCTATGAGTCCTTCCAGTAGAAATTTTGGTAGCACACCTGGAACATCTTTTGGTCTCAAGGAAAGATGTGCAGGTGCTGATACTCTCTCTCTCGTTGCTCGAATATTGCATAGATCCAAGGCTCATCTCCAGACAATGCTTTTTCAGAAAAATGCTGCTGTAGTTGAAGATTTCTATGTGAATTTGGTGGATGCTGTACCAGATCTTATAGAGCAAATTCATAGGACAACTGCAAGATTGCTCCTCCATATTAACGGGTATGTTGATCGGATTGCCAATGCAAAATGGGAAGTCAAAGAACTTGGTCTCGAACATAATGGGTATGTTGATTTGTTGTTGGGAGAATTTAAGCACTACAAAACAAGGCTTGCTCATGGGGGAATCCGCAAGGAGGTTCAAGATCGCCTCTTAGATTATGGACTGGAAATTGTTGCCCATACTCTTGTAGAAGGTCTATCACGTGTCAAGAGGTGTACTGATGAAGGGAGGGCTCTCATGTCATTGGATCTTCAGGTTCCTTTTAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2451 Vps54_N

Protein Analysis

871

Amino Acids

96.89

Weight (kDa)

5.7

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps54_N	PF10475	1 - 235	1.4e-78	Vacuolar-sorting protein 54, of GARP complex
Syndetin_C	PF10474	712 - 867	1.6e-47	Syndetin, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27900 AT2G27900
fragaria_vesca	FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380
malus_domestica	MD03G1129700.v1.1 MD11G1151500.v1.1
prunus_persica	Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1
pyrus_communis	pycom11g12360
rosa_chinensis	RchiOBHm_Chr5g0056331
rosa_laevigata	RLG00000035088
rosa_multiflora	Rmu_sc0000317.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023990 Rroxscaffold_1G00027590
rosa_rugosa	Rorug05G0298900 Rorug05G0299000 Rorug05G0299000
rosa_samantha	Rh5AG369700 Rh5BG380700 Rh5CG404100 Rh5DG393900
rosa_wichuraiana	Rw0G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2147
AasI	GACNNNNNNGTC	1 cut(s)	1990
Acc36I	ACCTGC	2 cut(s)	851, 2147
AccI	GTMKAC	2 cut(s)	570, 586
AciI	CCGC	4 cut(s)	816, 1015, 1200, 2470
AclWI	GGATC	5 cut(s)	141, 567, 1792, 2193, 2598
AcoI	YGGCCR	1 cut(s)	726
AcuI	CTGAAG	4 cut(s)	359, 1204, 2000, 2579
AcvI	CACGTG	1 cut(s)	2546
AfaI	GTAC	7 cut(s)	279, 330, 934, 1341, 1552, 2283, 2560
AfiI	CCNNNNNNNGG	2 cut(s)	1359, 2476
AflIII	ACRYGT	1 cut(s)	2545
AjnI	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
AleI	CACNNNNGTG	1 cut(s)	926
AluBI	AGCT	8 cut(s)	202, 298, 382, 709, 824, 1214, 1262, 1768
AluI	AGCT	8 cut(s)	202, 298, 382, 709, 824, 1214, 1262, 1768
Alw21I	GWGCWC	2 cut(s)	683, 1381
Alw26I	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2396
AlwI	GGATC	5 cut(s)	141, 567, 1792, 2193, 2598
AlwNI	CAGNNNCTG	2 cut(s)	382, 2162
Ama87I	CYCGRG	2 cut(s)	233, 1732
AoxI	GGCC	3 cut(s)	267, 699, 726
ApeKI	GCWGC	4 cut(s)	295, 980, 1211, 2240
AseI	ATTAAT	1 cut(s)	1968
AspLEI	GCGC	1 cut(s)	1288
AspS9I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
AsuHPI	GGTGA	6 cut(s)	34, 1130, 1382, 1574, 1601, 2052
AsuII	TTCGAA	1 cut(s)	1628
AvaI	CYCGRG	2 cut(s)	233, 1732
AvaII	GGWCC	3 cut(s)	1297, 1535, 1666
BaeI	ACNNNNGTAYC	4 cut(s)	1077, 1110, 1440, 1473
BanII	GRGCYC	1 cut(s)	2578
BauI	CACGAG	1 cut(s)	1089
BbrPI	CACGTG	1 cut(s)	2546
BbsI	GAAGAC	4 cut(s)	100, 548, 1659, 1988
Bbv12I	GWGCWC	2 cut(s)	683, 1381
BbvI	GCAGC	4 cut(s)	307, 967, 1223, 2227
BccI	CCATC	5 cut(s)	961, 965, 1367, 1402, 1565
BceAI	ACGGC	3 cut(s)	113, 327, 594
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BcoDI	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2396
BfaI	CTAG	5 cut(s)	129, 398, 656, 963, 1437
BfmI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2244
BfuAI	ACCTGC	2 cut(s)	851, 2147
BglII	AGATCT	2 cut(s)	1162, 2287
BisI	GCNGC	4 cut(s)	296, 981, 1212, 2241
BlpI	GCTNAGC	1 cut(s)	1923
BlsI	GCNGC	4 cut(s)	297, 982, 1213, 2242
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
Bme18I	GGWCC	3 cut(s)	1297, 1535, 1666
BmeT110I	CYCGRG	2 cut(s)	233, 1732
BmgT120I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
BmiI	GGNNCC	2 cut(s)	186, 2601
BmrFI	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BmrI	ACTGGG	1 cut(s)	1701
BmsI	GCATC	7 cut(s)	21, 109, 436, 1012, 1084, 1606, 2266
BmuI	ACTGGG	1 cut(s)	1701
BpiI	GAAGAC	4 cut(s)	100, 548, 1659, 1988
BpmI	CTGGAG	2 cut(s)	1782, 2198
Bpu1102I	GCTNAGC	1 cut(s)	1923
Bpu14I	TTCGAA	1 cut(s)	1628
BpuEI	CTTGAG	1 cut(s)	2126
BsaAI	YACGTR	1 cut(s)	2546
BsaBI	GATNNNNATC	1 cut(s)	1620
BsaI	GGTCTC	3 cut(s)	1002, 2144, 2396
BsaJI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2202
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	1359, 2476
Bse1I	ACTGG	8 cut(s)	188, 1456, 1707, 1757, 1879, 2017, 2100, 2511
Bse8I	GATNNNNATC	1 cut(s)	1620
BseBI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BseDI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2202
BseGI	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2281
BseJI	GATNNNNATC	1 cut(s)	1620
BseLI	CCNNNNNNNGG	2 cut(s)	1359, 2476
BseMII	CTCAG	7 cut(s)	189, 276, 327, 474, 534, 1157, 1937
BseNI	ACTGG	8 cut(s)	188, 1456, 1707, 1757, 1879, 2017, 2100, 2511
BseRI	GAGGAG	2 cut(s)	437, 2318
BseX3I	CGGCCG	1 cut(s)	726
BseXI	GCAGC	4 cut(s)	307, 967, 1223, 2227
BseYI	CCCAGC	2 cut(s)	361, 1184
BsgI	GTGCAG	1 cut(s)	2175
Bsh1285I	CGRYCG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	269, 701, 728
BsiEI	CGRYCG	1 cut(s)	729
BsiHKAI	GWGCWC	2 cut(s)	683, 1381
BsiHKCI	CYCGRG	2 cut(s)	233, 1732
BslFI	GGGAC	2 cut(s)	378, 479
BslI	CCNNNNNNNGG	2 cut(s)	1359, 2476
BsmAI	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2396
BsmFI	GGGAC	2 cut(s)	378, 479
BsmI	GAATGC	2 cut(s)	1134, 1762
BsnI	GGCC	3 cut(s)	269, 701, 728
Bso31I	GGTCTC	3 cut(s)	1002, 2144, 2396
BsoBI	CYCGRG	2 cut(s)	233, 1732
Bsp119I	TTCGAA	1 cut(s)	1628
Bsp1286I	GDGCHC	3 cut(s)	683, 1381, 2578
Bsp1407I	TGTACA	1 cut(s)	932
Bsp1720I	GCTNAGC	1 cut(s)	1923
BspACI	CCGC	4 cut(s)	816, 1015, 1200, 2470
BspANI	GGCC	3 cut(s)	269, 701, 728
BspCNI	CTCAG	7 cut(s)	190, 277, 326, 475, 533, 1158, 1936
BspHI	TCATGA	3 cut(s)	10, 688, 943
BspLI	GGNNCC	2 cut(s)	186, 2601
BspMAI	CTGCAG	3 cut(s)	266, 297, 328
BspMI	ACCTGC	2 cut(s)	851, 2147
BspPI	GGATC	5 cut(s)	141, 567, 1792, 2193, 2598
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	1628
BspTNI	GGTCTC	3 cut(s)	1002, 2144, 2396
BsrGI	TGTACA	1 cut(s)	932
BsrI	ACTGG	8 cut(s)	188, 1456, 1707, 1757, 1879, 2017, 2100, 2511
BssECI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2202
BssSI	CACGAG	1 cut(s)	1089
BssT1I	CCWWGG	2 cut(s)	1001, 2202
Bst2BI	CACGAG	1 cut(s)	1089
Bst2UI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
Bst4CI	ACNGT	4 cut(s)	282, 439, 599, 1339
Bst6I	CTCTTC	5 cut(s)	177, 378, 901, 1457, 1528
BstAUI	TGTACA	1 cut(s)	932
BstBAI	YACGTR	1 cut(s)	2546
BstBI	TTCGAA	1 cut(s)	1628
BstC8I	GCNNGC	2 cut(s)	1132, 2454
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2281
BstHHI	GCGC	1 cut(s)	1288
BstMAI	GTCTC	5 cut(s)	243, 1002, 1603, 2144, 2396
BstMCI	CGRYCG	1 cut(s)	729
BstMWI	GCNNNNNNNGC	1 cut(s)	1190
BstNI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
BstNSI	RCATGY	3 cut(s)	170, 577, 2075
BstSCI	CCNGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
BstSFI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2244
BstV1I	GCAGC	4 cut(s)	307, 967, 1223, 2227
BstV2I	GAAGAC	4 cut(s)	100, 548, 1659, 1988
BstX2I	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
BstYI	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
BstZI	CGGCCG	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	269, 701, 728
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2281
BtsI	GCAGTG	3 cut(s)	644, 982, 1026
BtsIMutI	CAGTG	6 cut(s)	604, 644, 982, 1026, 1750, 2024
BveI	ACCTGC	2 cut(s)	851, 2147
Cac8I	GCNNGC	2 cut(s)	1132, 2454
CaiI	CAGNNNCTG	2 cut(s)	382, 2162
CciI	TCATGA	3 cut(s)	10, 688, 943
CfoI	GCGC	1 cut(s)	1288
Cfr13I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
CseI	GACGC	2 cut(s)	972, 1068
Csp6I	GTAC	7 cut(s)	278, 329, 933, 1340, 1551, 2282, 2559
CspCI	CAANNNNNGTGG	6 cut(s)	1015, 1050, 1447, 1482, 1924, 1959
CviQI	GTAC	7 cut(s)	278, 329, 933, 1340, 1551, 2282, 2559
DrdI	GACNNNNNNGTC	1 cut(s)	1990
DseDI	GACNNNNNNGTC	1 cut(s)	1990
EaeI	YGGCCR	1 cut(s)	726
EagI	CGGCCG	1 cut(s)	726
Eam1104I	CTCTTC	5 cut(s)	177, 378, 901, 1457, 1528
EarI	CTCTTC	5 cut(s)	177, 378, 901, 1457, 1528
EclXI	CGGCCG	1 cut(s)	726
Eco130I	CCWWGG	2 cut(s)	1001, 2202
Eco24I	GRGCYC	1 cut(s)	2578
Eco31I	GGTCTC	3 cut(s)	1002, 2144, 2396
Eco32I	GATATC	1 cut(s)	2080
Eco47I	GGWCC	3 cut(s)	1297, 1535, 1666
Eco52I	CGGCCG	1 cut(s)	726
Eco57I	CTGAAG	4 cut(s)	359, 1204, 2000, 2579
Eco72I	CACGTG	1 cut(s)	2546
Eco88I	CYCGRG	2 cut(s)	233, 1732
EcoO109I	RGGNCCY	2 cut(s)	267, 1666
EcoRI	GAATTC	1 cut(s)	2056
EcoRII	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
EcoRV	GATATC	1 cut(s)	2080
EcoT14I	CCWWGG	2 cut(s)	1001, 2202
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	2578
ErhI	CCWWGG	2 cut(s)	1001, 2202
FalI	AAGNNNNNCTT	2 cut(s)	1729, 1761
FaqI	GGGAC	2 cut(s)	378, 479
FblI	GTMKAC	2 cut(s)	570, 586
Fnu4HI	GCNGC	4 cut(s)	296, 981, 1212, 2241
FokI	GGATG	6 cut(s)	43, 725, 979, 983, 2035, 2288
FriOI	GRGCYC	1 cut(s)	2578
Fsp4HI	GCNGC	4 cut(s)	296, 981, 1212, 2241
FspBI	CTAG	5 cut(s)	129, 398, 656, 963, 1437
GlaI	GCGC	1 cut(s)	1287
GluI	GCNGC	4 cut(s)	296, 981, 1212, 2241
GsaI	CCCAGC	2 cut(s)	365, 1188
GsuI	CTGGAG	2 cut(s)	1782, 2198
HaeIII	GGCC	3 cut(s)	269, 701, 728
HgaI	GACGC	2 cut(s)	972, 1068
HhaI	GCGC	1 cut(s)	1288
Hin6I	GCGC	1 cut(s)	1286
HinP1I	GCGC	1 cut(s)	1286
HincII	GTYRAC	3 cut(s)	587, 987, 1700
HindII	GTYRAC	3 cut(s)	587, 987, 1700
HinfI	GANTC	7 cut(s)	236, 386, 661, 722, 881, 2092, 2466
HphI	GGTGA	6 cut(s)	34, 1130, 1382, 1574, 1601, 2052
Hpy166II	GTNNAC	6 cut(s)	571, 587, 933, 987, 1700, 2559
Hpy8I	GTNNAC	6 cut(s)	571, 587, 933, 987, 1700, 2559
HpyCH4III	ACNGT	4 cut(s)	282, 439, 599, 1339
HpyCH4IV	ACGT	2 cut(s)	803, 2545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1190
HpySE526I	ACGT	2 cut(s)	803, 2545
HspAI	GCGC	1 cut(s)	1286
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	1376, 2331
Lsp1109I	GCAGC	4 cut(s)	307, 967, 1223, 2227
LweI	GCATC	7 cut(s)	21, 109, 436, 1012, 1084, 1606, 2266
MaeI	CTAG	5 cut(s)	129, 398, 656, 963, 1437
MaeII	ACGT	2 cut(s)	803, 2545
MaeIII	GTNAC	5 cut(s)	497, 761, 1250, 1589, 2012
MflI	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
MhlI	GDGCHC	3 cut(s)	683, 1381, 2578
MlyI	GAGTC	2 cut(s)	245, 2101
Mph1103I	ATGCAT	1 cut(s)	36
MseI	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2337, 2433, 2607
MslI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2087
MspA1I	CMGCKG	2 cut(s)	709, 1214
MspR9I	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
Mva1269I	GAATGC	2 cut(s)	1134, 1762
MvaI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
MwoI	GCNNNNNNNGC	1 cut(s)	1190
NlaIV	GGNNCC	2 cut(s)	186, 2601
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	3 cut(s)	761, 1589, 2012
NsiI	ATGCAT	1 cut(s)	36
NspI	RCATGY	3 cut(s)	170, 577, 2075
NspV	TTCGAA	1 cut(s)	1628
OliI	CACNNNNGTG	1 cut(s)	926
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	3 cut(s)	10, 688, 943
PaqCI	CACCTGC	1 cut(s)	2147
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PctI	GAATGC	2 cut(s)	1134, 1762
PfeI	GAWTC	5 cut(s)	386, 661, 722, 881, 2466
PflFI	GACNNNGTC	1 cut(s)	1595
PfoI	TCCNGGA	2 cut(s)	778, 1299
PkrI	GCNGC	4 cut(s)	297, 982, 1213, 2242
PleI	GAGTC	2 cut(s)	244, 2100
PmaCI	CACGTG	1 cut(s)	2546
PmlI	CACGTG	1 cut(s)	2546
PpsI	GAGTC	2 cut(s)	244, 2100
Ppu21I	YACGTR	1 cut(s)	2546
PpuMI	RGGWCCY	1 cut(s)	1666
PshBI	ATTAAT	1 cut(s)	1968
Psp5II	RGGWCCY	1 cut(s)	1666
Psp6I	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
PspCI	CACGTG	1 cut(s)	2546
PspFI	CCCAGC	2 cut(s)	361, 1184
PspGI	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
PspN4I	GGNNCC	2 cut(s)	186, 2601
PspPI	GGNCC	4 cut(s)	267, 1297, 1535, 1666
PspPPI	RGGWCCY	1 cut(s)	1666
PspXI	VCTCGAGB	1 cut(s)	233
PstI	CTGCAG	3 cut(s)	266, 297, 328
PstNI	CAGNNNCTG	2 cut(s)	382, 2162
PsuI	RGATCY	5 cut(s)	133, 1162, 2198, 2287, 2590
PsyI	GACNNNGTC	1 cut(s)	1595
PvuII	CAGCTG	2 cut(s)	709, 1214
RsaI	GTAC	7 cut(s)	279, 330, 934, 1341, 1552, 2283, 2560
RsaNI	GTAC	7 cut(s)	278, 329, 933, 1340, 1551, 2282, 2559
RseI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2087
SalI	GTCGAC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2337, 2433, 2607
SatI	GCNGC	4 cut(s)	296, 981, 1212, 2241
Sau96I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	2 cut(s)	245, 2101
ScrFI	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2124
SduI	GDGCHC	3 cut(s)	683, 1381, 2578
SfaNI	GCATC	7 cut(s)	21, 109, 436, 1012, 1084, 1606, 2266
SfcI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2244
Sfr274I	CTCGAG	1 cut(s)	233
SfuI	TTCGAA	1 cut(s)	1628
SinI	GGWCC	3 cut(s)	1297, 1535, 1666
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2087
SmlI	CTYRAG	2 cut(s)	233, 2141
SmoI	CTYRAG	2 cut(s)	233, 2141
SsiI	CCGC	4 cut(s)	816, 1015, 1200, 2470
SspI	AATATT	1 cut(s)	2190
SspMI	CTAG	5 cut(s)	129, 398, 656, 963, 1437
StyD4I	CCNGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2122
StyI	CCWWGG	2 cut(s)	1001, 2202
TaaI	ACNGT	4 cut(s)	282, 439, 599, 1339
TaiI	ACGT	2 cut(s)	806, 2548
TaqI	TCGA	7 cut(s)	113, 234, 586, 1628, 1711, 2185, 2394
TatI	WGTACW	4 cut(s)	277, 328, 932, 2558
TfiI	GAWTC	5 cut(s)	386, 661, 722, 881, 2466
Tru1I	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2337, 2433, 2607
Tru9I	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2337, 2433, 2607
TscAI	CASTG	6 cut(s)	604, 644, 982, 1033, 1757, 2024
TseFI	GTSAC	3 cut(s)	761, 1589, 2012
TseI	GCWGC	4 cut(s)	295, 980, 1211, 2240
Tsp45I	GTSAC	3 cut(s)	761, 1589, 2012
TspRI	CASTG	6 cut(s)	604, 644, 982, 1033, 1757, 2024
Tth111I	GACNNNGTC	1 cut(s)	1595
VpaK11BI	GGWCC	3 cut(s)	1297, 1535, 1666
VspI	ATTAAT	1 cut(s)	1968
XceI	RCATGY	3 cut(s)	170, 577, 2075
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	570, 586
XspI	CTAG	5 cut(s)	129, 398, 656, 963, 1437
ZrmI	AGTACT	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.