Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004457

Physical Location & Seq

Genomic Coordinates Forward (+)

53990055 .. 54005207

Gene Structure 15153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG404100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGGAACATCATGAAGTAATGGTGAAGGGGATGCATTTGGTCAGGGAATTGGAGAAAGACTTAAAAGTTGCGAATGTCATTTGCATGAATGGAAGACGGCATCTTACTTCATCGAGAAATGAGGTTTCTAGGGATCTGATCGTAAATTCCTATTCCAAGAAGAAACATGCTCTTCTGGACATGGTTCCAGTTTTGACTGAGCTTCGTCATGCGTTAGAAATGCAATCCGAACTCGAGTCTCTTGTTGAGGAAGGAAATTACTGTAGGGCCTTTCAAGTACTGTCTGAGTATCTGCAGCTATTAGATAGTTTCTCAGAACTATCTGCAGTACAAGAGATGAGCCGTGGAGTTGAGGTTTGGCTGGGACAAACTCTTCAGAAGCTGGATTCCTTGTTGCTAGGAGTGTGCCAGAAATTCAATGAGGAGGGCTATATAACTGTGGTTGATGCGTATGCTCTAATTGGGGACATCTCTGGTCTTGCTGAGAAGATACAAAGTTACTTTATGCAGGAAGTTCTCTCAGAAACCCATTCTATATTGAAGACCATTGTGCAAGAGGATCAGGAAGTAGACATGCAAAATAGTCGACTTACCTACAGTGATCTATGCCGTCAGATACCTGAACCTAAGTTTAGGCAGTGTTTGTTAAATACACTAGAGATTCTATTCAAGTTGATGTGCTCATATCATGAAATCATGGCCTTTCAGCTGGATGATAAGGATTCGGCCGAGAAAACTTCAAGCATTGAGCCAGAGGAAAGTGACATCTCTCAAATTCCAGGAGGCGTTCAGAACATTTCAACGTCTTTCTCGTCCGCAAAAGCTAATGGCTCTCTCTCAGAATGTGTAGATGTAATAGCAGGTTCATCTTCTATGGAGGAATCTCATACCAACTCTTCCACCGAGCCTACGGGAAACACCACTTCCGTGTGTACAACATCTCATGATCTAGTTGATGAGGCTAGGATGGATGGCAGTGCTGCGTCAACAAGTGGGTCTCCTTGGTATCAACTGCGGAAAGATGCCACTGCATTTGTTTCACAAACCCTTCAAAGAGGACGCAAAAATCTCTGGCATCTCACAACTACTCGTGTATCAGTCTTGCTTTCTTCTGCTTCTGTATCTTCTGCCAGCATTCACCAGTTCTTGAAAAATTATGAAGATCTGAGTGCCTTCATCTTGGCTGGGGAAGCATTTTGCGGAATTGAAGCAGCTGACTTCAGGCAGAAGTTGAAGGCAGTTTGTGAAAGTTACTTTTTAGCTTTTCATCGGCAGAATATCTTTGCGCTCAAAATGGTCCTGGAAAGAGAACTTTGGTTAATCATGCCACCTGATACGGTACAAGAAATTACCTTTCCTGGGCTTGTTGGTGATGGAGCACCTTTAATTATTCCATCTAATAGTAAGTCCAGGGTGCTACTTTCTGATAAGTCTGCTAGATTGGTTGATACTGGTGTCAAGAAGAGTGGTTTTTCTATTTGGATAAAAAATGGAAACCCTTTTGCGTTAAAACTGCCACACTCTTCCAAAGAAGGTCCGAAAGGGAATGGTACAACTTCTGGTGAATTTGATGGAAATTTTAGTGAAGGTGACAAGGTCTCTCCACGAAAGAGTGATGCCAATCATTCGAATGGTGCTAATTCTGTTTCGGAAGACGAAAATGAGGACCTTCTTGCAGACTTTATTGATGAGGATAGTCAACTCCCCAGTCGAATTTCAAAACCGAAACACCCGAGAAGCCAATCTTCACACTGGAATGCTGGAGAGCTAATAGCCCAAACAGGATCGTCTATTTGCCTTCTAAGGTCAATGGATAAATATGCCAGGCTAATGCAGAAATTAGATATAGTCAATGTGGAGTTCTTCAAGGGGATATGCCAGTTGTTTGAGGTATTCTTTCATTTTGTATTTGAAACATTTGCTCAGCAAAATAGCAACTCTGGTGGAAAAGGCTCATCTGACCCGATTAATTATCGCCTGAAGACAGCATTGTCCAGAATACAACAAAATTGTGACCAGTGGATGAAGCCCTCATCATCATCTTCCCCCGCATCTTTGAATTCACCATTTACACATGCAGATATCACACCTATGAGTCCTTCCAGTACAAATTTTGGTAGCACACCTGGAACGTCTTTTGGTCTCAAGGAAAGATGTGCTGGTGCTGATACTCTCTCTCTCGTTGCTCGAATATTGCATAGATCCAAGGCTCATCTCCAGACAATGCTTTTTCAGAAAAATGCTGCTGTAGTTGATGATTTCTATGTGAATTTGGTGGATGCTGTACCAGATCTTATAGAGCAAATTCATAGGACAACTGCAAGATTGCTCCTCCATATTAACGGGTATGTTGATCGGATTGCCAATGCAAAATGGGAAGTCAAAGAACTTGGACTCGAACATAATGGGTATGTTGATTTGTTGTTGGGAGAATTTAAGCACTACAAAACAAGGCTTGCTCATGGGGGAATCCGCAAGGAGGTTCAAGATCGCCTCTTAGATTATGGACTGGAAATTGTTGCCCATACTCTTGTAGAAGGTCTATCACGTGTCAAGAGGTGTACTGATGAAGGGAGGGCTCTCATGTCATTGGATCTTCAGGTTCCTTTTAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2451 Vps54_N

Protein Analysis

872

Amino Acids

96.99

Weight (kDa)

5.66

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps54_N	PF10475	1 - 235	3.5e-80	Vacuolar-sorting protein 54, of GARP complex
Syndetin_C	PF10474	713 - 868	1.9e-47	Syndetin, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27900 AT2G27900
fragaria_vesca	FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380 FvH4_3g30380
malus_domestica	MD03G1129700.v1.1 MD11G1151500.v1.1
prunus_persica	Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1 Prupe.6G114700_v2.0.a1
pyrus_communis	pycom11g12360
rosa_chinensis	RchiOBHm_Chr5g0056331
rosa_laevigata	RLG00000035088
rosa_multiflora	Rmu_sc0000317.1_g000010
rosa_roxburghii	Rroxscaffold_1G00023990 Rroxscaffold_1G00027590
rosa_rugosa	Rorug05G0298900 Rorug05G0299000 Rorug05G0299000
rosa_samantha	Rh5AG369700 Rh5BG380700 Rh5CG404100 Rh5DG393900
rosa_wichuraiana	Rw0G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1990
Acc36I	ACCTGC	1 cut(s)	851
AccI	GTMKAC	2 cut(s)	570, 586
AciI	CCGC	5 cut(s)	816, 1015, 1200, 2049, 2473
AclWI	GGATC	5 cut(s)	141, 567, 1792, 2196, 2601
AcoI	YGGCCR	1 cut(s)	726
AcuI	CTGAAG	4 cut(s)	359, 1204, 2000, 2582
AcvI	CACGTG	1 cut(s)	2549
AfaI	GTAC	8 cut(s)	279, 330, 934, 1341, 1552, 2107, 2286, 2563
AfiI	CCNNNNNNNGG	2 cut(s)	1359, 2479
AflIII	ACRYGT	1 cut(s)	2548
AjnI	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2125
AleI	CACNNNNGTG	1 cut(s)	926
AluBI	AGCT	8 cut(s)	202, 298, 382, 709, 824, 1214, 1262, 1768
AluI	AGCT	8 cut(s)	202, 298, 382, 709, 824, 1214, 1262, 1768
Alw21I	GWGCWC	2 cut(s)	683, 1381
Alw26I	GTCTC	4 cut(s)	243, 1002, 1603, 2147
AlwI	GGATC	5 cut(s)	141, 567, 1792, 2196, 2601
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	2 cut(s)	233, 1732
AoxI	GGCC	3 cut(s)	267, 699, 726
ApeKI	GCWGC	4 cut(s)	295, 980, 1211, 2243
AseI	ATTAAT	1 cut(s)	1968
AspLEI	GCGC	1 cut(s)	1288
AspS9I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
AsuHPI	GGTGA	6 cut(s)	34, 1130, 1382, 1574, 1601, 2055
AsuII	TTCGAA	1 cut(s)	1628
AvaI	CYCGRG	2 cut(s)	233, 1732
AvaII	GGWCC	3 cut(s)	1297, 1535, 1666
BaeI	ACNNNNGTAYC	4 cut(s)	1077, 1110, 1440, 1473
BanII	GRGCYC	1 cut(s)	2581
BauI	CACGAG	1 cut(s)	1089
BbrPI	CACGTG	1 cut(s)	2549
BbsI	GAAGAC	4 cut(s)	100, 548, 1659, 1988
Bbv12I	GWGCWC	2 cut(s)	683, 1381
BbvI	GCAGC	4 cut(s)	307, 967, 1223, 2230
BccI	CCATC	5 cut(s)	961, 965, 1367, 1402, 1565
BceAI	ACGGC	3 cut(s)	113, 327, 594
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
BcoDI	GTCTC	4 cut(s)	243, 1002, 1603, 2147
BfaI	CTAG	6 cut(s)	129, 398, 656, 950, 963, 1437
BfmI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2247
BfuAI	ACCTGC	1 cut(s)	851
BglII	AGATCT	2 cut(s)	1162, 2290
BisI	GCNGC	4 cut(s)	296, 981, 1212, 2244
BlpI	GCTNAGC	1 cut(s)	1923
BlsI	GCNGC	4 cut(s)	297, 982, 1213, 2245
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
Bme18I	GGWCC	3 cut(s)	1297, 1535, 1666
BmeT110I	CYCGRG	2 cut(s)	233, 1732
BmgT120I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
BmiI	GGNNCC	2 cut(s)	186, 2604
BmrFI	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
BmrI	ACTGGG	1 cut(s)	1701
BmsI	GCATC	8 cut(s)	21, 109, 436, 1012, 1084, 1606, 2060, 2269
BmuI	ACTGGG	1 cut(s)	1701
BpiI	GAAGAC	4 cut(s)	100, 548, 1659, 1988
BpmI	CTGGAG	2 cut(s)	1782, 2201
Bpu1102I	GCTNAGC	1 cut(s)	1923
Bpu14I	TTCGAA	1 cut(s)	1628
BpuEI	CTTGAG	1 cut(s)	2129
BsaAI	YACGTR	1 cut(s)	2549
BsaBI	GATNNNNATC	1 cut(s)	1620
BsaI	GGTCTC	3 cut(s)	1002, 1603, 2147
BsaJI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2205
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	1359, 2479
Bse1I	ACTGG	9 cut(s)	188, 1141, 1456, 1707, 1757, 1879, 2017, 2103, 2514
Bse8I	GATNNNNATC	1 cut(s)	1620
BseBI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
BseDI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2205
BseGI	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2284
BseJI	GATNNNNATC	1 cut(s)	1620
BseLI	CCNNNNNNNGG	2 cut(s)	1359, 2479
BseMII	CTCAG	8 cut(s)	189, 276, 327, 474, 534, 852, 1157, 1937
BseNI	ACTGG	9 cut(s)	188, 1141, 1456, 1707, 1757, 1879, 2017, 2103, 2514
BseRI	GAGGAG	2 cut(s)	437, 2321
BseX3I	CGGCCG	1 cut(s)	726
BseXI	GCAGC	4 cut(s)	307, 967, 1223, 2230
BseYI	CCCAGC	2 cut(s)	361, 1184
Bsh1285I	CGRYCG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	269, 701, 728
BsiEI	CGRYCG	1 cut(s)	729
BsiHKAI	GWGCWC	2 cut(s)	683, 1381
BsiHKCI	CYCGRG	2 cut(s)	233, 1732
BslFI	GGGAC	2 cut(s)	378, 479
BslI	CCNNNNNNNGG	2 cut(s)	1359, 2479
BsmAI	GTCTC	4 cut(s)	243, 1002, 1603, 2147
BsmFI	GGGAC	2 cut(s)	378, 479
BsmI	GAATGC	2 cut(s)	1134, 1762
BsnI	GGCC	3 cut(s)	269, 701, 728
Bso31I	GGTCTC	3 cut(s)	1002, 1603, 2147
BsoBI	CYCGRG	2 cut(s)	233, 1732
Bsp119I	TTCGAA	1 cut(s)	1628
Bsp1286I	GDGCHC	3 cut(s)	683, 1381, 2581
Bsp1407I	TGTACA	1 cut(s)	932
Bsp1720I	GCTNAGC	1 cut(s)	1923
BspACI	CCGC	5 cut(s)	816, 1015, 1200, 2049, 2473
BspANI	GGCC	3 cut(s)	269, 701, 728
BspCNI	CTCAG	8 cut(s)	190, 277, 326, 475, 533, 851, 1158, 1936
BspHI	TCATGA	3 cut(s)	10, 688, 943
BspLI	GGNNCC	2 cut(s)	186, 2604
BspMAI	CTGCAG	2 cut(s)	297, 328
BspMI	ACCTGC	1 cut(s)	851
BspPI	GGATC	5 cut(s)	141, 567, 1792, 2196, 2601
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	1628
BspTNI	GGTCTC	3 cut(s)	1002, 1603, 2147
BsrGI	TGTACA	1 cut(s)	932
BsrI	ACTGG	9 cut(s)	188, 1141, 1456, 1707, 1757, 1879, 2017, 2103, 2514
BssECI	CCNNGG	5 cut(s)	343, 1001, 1358, 1410, 2205
BssSI	CACGAG	1 cut(s)	1089
BssT1I	CCWWGG	2 cut(s)	1001, 2205
Bst2BI	CACGAG	1 cut(s)	1089
Bst2UI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
Bst4CI	ACNGT	5 cut(s)	263, 282, 439, 599, 1339
Bst6I	CTCTTC	5 cut(s)	177, 378, 901, 1457, 1528
BstAUI	TGTACA	1 cut(s)	932
BstBAI	YACGTR	1 cut(s)	2549
BstBI	TTCGAA	1 cut(s)	1628
BstC8I	GCNNGC	2 cut(s)	1132, 2457
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2284
BstHHI	GCGC	1 cut(s)	1288
BstMAI	GTCTC	4 cut(s)	243, 1002, 1603, 2147
BstMCI	CGRYCG	1 cut(s)	729
BstMWI	GCNNNNNNNGC	1 cut(s)	1190
BstNI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
BstNSI	RCATGY	3 cut(s)	170, 577, 2078
BstSCI	CCNGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2125
BstSFI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2247
BstV1I	GCAGC	4 cut(s)	307, 967, 1223, 2230
BstV2I	GAAGAC	4 cut(s)	100, 548, 1659, 1988
BstX2I	RGATCY	5 cut(s)	133, 1162, 2201, 2290, 2593
BstYI	RGATCY	5 cut(s)	133, 1162, 2201, 2290, 2593
BstZI	CGGCCG	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	269, 701, 728
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	6 cut(s)	36, 718, 972, 976, 2028, 2284
BtsI	GCAGTG	3 cut(s)	644, 982, 1026
BtsIMutI	CAGTG	6 cut(s)	604, 644, 982, 1026, 1750, 2024
BveI	ACCTGC	1 cut(s)	851
Cac8I	GCNNGC	2 cut(s)	1132, 2457
CaiI	CAGNNNCTG	1 cut(s)	382
CciI	TCATGA	3 cut(s)	10, 688, 943
CfoI	GCGC	1 cut(s)	1288
Cfr13I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
CseI	GACGC	2 cut(s)	972, 1068
Csp6I	GTAC	8 cut(s)	278, 329, 933, 1340, 1551, 2106, 2285, 2562
CspCI	CAANNNNNGTGG	6 cut(s)	1015, 1050, 1447, 1482, 1924, 1959
CviQI	GTAC	8 cut(s)	278, 329, 933, 1340, 1551, 2106, 2285, 2562
DrdI	GACNNNNNNGTC	1 cut(s)	1990
DseDI	GACNNNNNNGTC	1 cut(s)	1990
EaeI	YGGCCR	1 cut(s)	726
EagI	CGGCCG	1 cut(s)	726
Eam1104I	CTCTTC	5 cut(s)	177, 378, 901, 1457, 1528
EarI	CTCTTC	5 cut(s)	177, 378, 901, 1457, 1528
EclXI	CGGCCG	1 cut(s)	726
Eco130I	CCWWGG	2 cut(s)	1001, 2205
Eco24I	GRGCYC	1 cut(s)	2581
Eco31I	GGTCTC	3 cut(s)	1002, 1603, 2147
Eco32I	GATATC	1 cut(s)	2083
Eco47I	GGWCC	3 cut(s)	1297, 1535, 1666
Eco52I	CGGCCG	1 cut(s)	726
Eco57I	CTGAAG	4 cut(s)	359, 1204, 2000, 2582
Eco72I	CACGTG	1 cut(s)	2549
Eco88I	CYCGRG	2 cut(s)	233, 1732
EcoO109I	RGGNCCY	2 cut(s)	267, 1666
EcoRI	GAATTC	1 cut(s)	2059
EcoRII	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2125
EcoRV	GATATC	1 cut(s)	2083
EcoT14I	CCWWGG	2 cut(s)	1001, 2205
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	2581
ErhI	CCWWGG	2 cut(s)	1001, 2205
FalI	AAGNNNNNCTT	2 cut(s)	1729, 1761
FaqI	GGGAC	2 cut(s)	378, 479
FauI	CCCGC	1 cut(s)	2056
FblI	GTMKAC	2 cut(s)	570, 586
Fnu4HI	GCNGC	4 cut(s)	296, 981, 1212, 2244
FokI	GGATG	6 cut(s)	43, 725, 979, 983, 2035, 2291
FriOI	GRGCYC	1 cut(s)	2581
Fsp4HI	GCNGC	4 cut(s)	296, 981, 1212, 2244
FspBI	CTAG	6 cut(s)	129, 398, 656, 950, 963, 1437
GlaI	GCGC	1 cut(s)	1287
GluI	GCNGC	4 cut(s)	296, 981, 1212, 2244
GsaI	CCCAGC	2 cut(s)	365, 1188
GsuI	CTGGAG	2 cut(s)	1782, 2201
HaeIII	GGCC	3 cut(s)	269, 701, 728
HgaI	GACGC	2 cut(s)	972, 1068
HhaI	GCGC	1 cut(s)	1288
Hin6I	GCGC	1 cut(s)	1286
HinP1I	GCGC	1 cut(s)	1286
HincII	GTYRAC	3 cut(s)	587, 987, 1700
HindII	GTYRAC	3 cut(s)	587, 987, 1700
HinfI	GANTC	8 cut(s)	236, 386, 661, 722, 881, 2095, 2394, 2469
HphI	GGTGA	6 cut(s)	34, 1130, 1382, 1574, 1601, 2055
Hpy166II	GTNNAC	6 cut(s)	571, 587, 933, 987, 1700, 2562
Hpy8I	GTNNAC	6 cut(s)	571, 587, 933, 987, 1700, 2562
HpyCH4III	ACNGT	5 cut(s)	263, 282, 439, 599, 1339
HpyCH4IV	ACGT	3 cut(s)	803, 2132, 2548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1190
HpySE526I	ACGT	3 cut(s)	803, 2132, 2548
HspAI	GCGC	1 cut(s)	1286
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	1376, 2334
Lsp1109I	GCAGC	4 cut(s)	307, 967, 1223, 2230
LweI	GCATC	8 cut(s)	21, 109, 436, 1012, 1084, 1606, 2060, 2269
MaeI	CTAG	6 cut(s)	129, 398, 656, 950, 963, 1437
MaeII	ACGT	3 cut(s)	803, 2132, 2548
MaeIII	GTNAC	5 cut(s)	497, 761, 1250, 1589, 2012
MflI	RGATCY	5 cut(s)	133, 1162, 2201, 2290, 2593
MhlI	GDGCHC	3 cut(s)	683, 1381, 2581
MlyI	GAGTC	3 cut(s)	245, 2104, 2388
Mph1103I	ATGCAT	1 cut(s)	36
MseI	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2340, 2436, 2610
MslI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2090
MspA1I	CMGCKG	2 cut(s)	709, 1214
MspR9I	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
Mva1269I	GAATGC	2 cut(s)	1134, 1762
MvaI	CCWGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
MwoI	GCNNNNNNNGC	1 cut(s)	1190
NlaIV	GGNNCC	2 cut(s)	186, 2604
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	3 cut(s)	761, 1589, 2012
NsiI	ATGCAT	1 cut(s)	36
NspI	RCATGY	3 cut(s)	170, 577, 2078
NspV	TTCGAA	1 cut(s)	1628
OliI	CACNNNNGTG	1 cut(s)	926
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	3 cut(s)	10, 688, 943
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PctI	GAATGC	2 cut(s)	1134, 1762
PfeI	GAWTC	5 cut(s)	386, 661, 722, 881, 2469
PflFI	GACNNNGTC	1 cut(s)	1595
PfoI	TCCNGGA	2 cut(s)	778, 1299
PkrI	GCNGC	4 cut(s)	297, 982, 1213, 2245
PleI	GAGTC	3 cut(s)	244, 2103, 2388
PmaCI	CACGTG	1 cut(s)	2549
PmlI	CACGTG	1 cut(s)	2549
PpsI	GAGTC	3 cut(s)	244, 2103, 2388
Ppu21I	YACGTR	1 cut(s)	2549
PpuMI	RGGWCCY	1 cut(s)	1666
PshBI	ATTAAT	1 cut(s)	1968
Psp5II	RGGWCCY	1 cut(s)	1666
Psp6I	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2125
PspCI	CACGTG	1 cut(s)	2549
PspFI	CCCAGC	2 cut(s)	361, 1184
PspGI	CCWGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2125
PspN4I	GGNNCC	2 cut(s)	186, 2604
PspPI	GGNCC	4 cut(s)	267, 1297, 1535, 1666
PspPPI	RGGWCCY	1 cut(s)	1666
PspXI	VCTCGAGB	1 cut(s)	233
PstI	CTGCAG	2 cut(s)	297, 328
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	5 cut(s)	133, 1162, 2201, 2290, 2593
PsyI	GACNNNGTC	1 cut(s)	1595
PvuII	CAGCTG	2 cut(s)	709, 1214
RsaI	GTAC	8 cut(s)	279, 330, 934, 1341, 1552, 2107, 2286, 2563
RsaNI	GTAC	8 cut(s)	278, 329, 933, 1340, 1551, 2106, 2285, 2562
RseI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2090
SalI	GTCGAC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2340, 2436, 2610
SatI	GCNGC	4 cut(s)	296, 981, 1212, 2244
Sau96I	GGNCC	4 cut(s)	267, 1297, 1535, 1666
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	3 cut(s)	245, 2104, 2388
ScrFI	CCNGG	6 cut(s)	780, 1301, 1359, 1411, 1825, 2127
SduI	GDGCHC	3 cut(s)	683, 1381, 2581
SfaNI	GCATC	8 cut(s)	21, 109, 436, 1012, 1084, 1606, 2060, 2269
SfcI	CTRYAG	5 cut(s)	262, 293, 324, 595, 2247
Sfr274I	CTCGAG	1 cut(s)	233
SfuI	TTCGAA	1 cut(s)	1628
SinI	GGWCC	3 cut(s)	1297, 1535, 1666
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	5 cut(s)	83, 926, 1629, 1755, 2090
SmlI	CTYRAG	2 cut(s)	233, 2144
SmoI	CTYRAG	2 cut(s)	233, 2144
SsiI	CCGC	5 cut(s)	816, 1015, 1200, 2049, 2473
SspI	AATATT	1 cut(s)	2193
SspMI	CTAG	6 cut(s)	129, 398, 656, 950, 963, 1437
StyD4I	CCNGG	6 cut(s)	778, 1299, 1357, 1409, 1823, 2125
StyI	CCWWGG	2 cut(s)	1001, 2205
TaaI	ACNGT	5 cut(s)	263, 282, 439, 599, 1339
TaiI	ACGT	3 cut(s)	806, 2135, 2551
TaqI	TCGA	7 cut(s)	113, 234, 586, 1628, 1711, 2188, 2397
TatI	WGTACW	5 cut(s)	277, 328, 932, 2105, 2561
TfiI	GAWTC	5 cut(s)	386, 661, 722, 881, 2469
Tru1I	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2340, 2436, 2610
Tru9I	TTAA	9 cut(s)	62, 647, 1319, 1385, 1508, 1968, 2340, 2436, 2610
TscAI	CASTG	6 cut(s)	604, 644, 982, 1033, 1757, 2024
TseFI	GTSAC	3 cut(s)	761, 1589, 2012
TseI	GCWGC	4 cut(s)	295, 980, 1211, 2243
Tsp45I	GTSAC	3 cut(s)	761, 1589, 2012
TspGWI	ACGGA	1 cut(s)	916
TspRI	CASTG	6 cut(s)	604, 644, 982, 1033, 1757, 2024
Tth111I	GACNNNGTC	1 cut(s)	1595
VpaK11BI	GGWCC	3 cut(s)	1297, 1535, 1666
VspI	ATTAAT	1 cut(s)	1968
XceI	RCATGY	3 cut(s)	170, 577, 2078
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	570, 586
XspI	CTAG	6 cut(s)	129, 398, 656, 950, 963, 1437
ZrmI	AGTACT	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.