TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27980 |
| fragaria_vesca | FvH4_3g30510 FvH4_3g30510 FvH4_3g30510 |
| malus_domestica | MD03G1127900.v1.1 MD11G1149500.v1.1 |
| prunus_persica | Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 |
| pyrus_communis | pycom11g12240 |
| rosa_chinensis | RchiOBHm_Chr5g0056471 |
| rosa_laevigata | RLG00000035101 |
| rosa_multiflora | Rmu_sc0002761.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00023850 |
| rosa_rugosa | Rorug05G0300200 |
| rosa_samantha | Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900 |
| rosa_wichuraiana | Rw5G034720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2646 |
| Acc36I | ACCTGC | 2 cut(s) | 527, 2379 |
| AccII | CGCG | 3 cut(s) | 189, 191, 2565 |
| AciI | CCGC | 3 cut(s) | 1217, 1804, 2565 |
| AclI | AACGTT | 1 cut(s) | 1952 |
| AclWI | GGATC | 5 cut(s) | 429, 1258, 1625, 1638, 2750 |
| AcsI | RAATTY | 7 cut(s) | 26, 1115, 1126, 1568, 2441, 2596, 3071 |
| AcuI | CTGAAG | 5 cut(s) | 662, 1062, 1872, 2517, 2682 |
| AdeI | CACNNNGTG | 2 cut(s) | 1385, 3182 |
| AfaI | GTAC | 5 cut(s) | 13, 52, 1187, 2846, 3171 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 621, 995 |
| AgsI | TTSAA | 7 cut(s) | 85, 148, 338, 1055, 1070, 1950, 2461 |
| AjnI | CCWGG | 2 cut(s) | 1714, 1726 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2433, 2465 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1903, 1935 |
| AluBI | AGCT | 9 cut(s) | 772, 1141, 1758, 2119, 2267, 2331, 2347, 2491, 2578 |
| AluI | AGCT | 9 cut(s) | 772, 1141, 1758, 2119, 2267, 2331, 2347, 2491, 2578 |
| Alw21I | GWGCWC | 2 cut(s) | 2121, 2349 |
| Alw26I | GTCTC | 1 cut(s) | 489 |
| AlwI | GGATC | 5 cut(s) | 429, 1258, 1625, 1638, 2750 |
| Ama87I | CYCGRG | 2 cut(s) | 851, 2519 |
| AoxI | GGCC | 4 cut(s) | 1619, 1959, 2823, 3201 |
| ApeKI | GCWGC | 3 cut(s) | 1807, 2264, 3038 |
| ApoI | RAATTY | 7 cut(s) | 26, 1115, 1126, 1568, 2441, 2596, 3071 |
| AspLEI | GCGC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 8 cut(s) | 1454, 1496, 1960, 2056, 2196, 2674, 2775, 2824 |
| AsuII | TTCGAA | 1 cut(s) | 2320 |
| AvaI | CYCGRG | 2 cut(s) | 851, 2519 |
| AvaII | GGWCC | 6 cut(s) | 1454, 1496, 2056, 2196, 2674, 2775 |
| BamHI | GGATCC | 1 cut(s) | 1630 |
| BanII | GRGCYC | 3 cut(s) | 1304, 2121, 2349 |
| BauI | CACGAG | 1 cut(s) | 2120 |
| Bbv12I | GWGCWC | 2 cut(s) | 2121, 2349 |
| BbvI | GCAGC | 3 cut(s) | 1794, 2276, 3050 |
| BccI | CCATC | 6 cut(s) | 544, 1055, 1838, 2078, 2102, 2661 |
| BceAI | ACGGC | 3 cut(s) | 30, 1975, 3170 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1304, 1338 |
| BciT130I | CCWGG | 2 cut(s) | 1716, 1728 |
| BciVI | GTATCC | 1 cut(s) | 1905 |
| BclI | TGATCA | 2 cut(s) | 682, 2425 |
| BcoDI | GTCTC | 1 cut(s) | 489 |
| BfmI | CTRYAG | 2 cut(s) | 534, 708 |
| BfuAI | ACCTGC | 2 cut(s) | 527, 2379 |
| BfuI | GTATCC | 1 cut(s) | 1905 |
| BglII | AGATCT | 2 cut(s) | 99, 569 |
| BisI | GCNGC | 4 cut(s) | 1805, 1808, 2265, 3039 |
| BlsI | GCNGC | 4 cut(s) | 1806, 1809, 2266, 3040 |
| Bme1390I | CCNGG | 2 cut(s) | 1716, 1728 |
| Bme18I | GGWCC | 6 cut(s) | 1454, 1496, 2056, 2196, 2674, 2775 |
| BmeT110I | CYCGRG | 2 cut(s) | 851, 2519 |
| BmgT120I | GGNCC | 8 cut(s) | 1454, 1496, 1960, 2056, 2196, 2674, 2775, 2824 |
| BmiI | GGNNCC | 6 cut(s) | 1563, 1632, 1725, 2675, 2776, 3008 |
| BmrFI | CCNGG | 2 cut(s) | 1716, 1728 |
| BmrI | ACTGGG | 1 cut(s) | 63 |
| BmsI | GCATC | 7 cut(s) | 210, 627, 694, 1588, 2278, 2303, 2997 |
| BmuI | ACTGGG | 1 cut(s) | 63 |
| BpmI | CTGGAG | 3 cut(s) | 42, 1385, 1893 |
| Bpu14I | TTCGAA | 1 cut(s) | 2320 |
| BpuEI | CTTGAG | 5 cut(s) | 452, 797, 876, 1190, 2468 |
| Bsa29I | ATCGAT | 1 cut(s) | 182 |
| BsaBI | GATNNNNATC | 2 cut(s) | 681, 2247 |
| BsaJI | CCNNGG | 7 cut(s) | 802, 850, 1492, 1777, 2518, 2778, 2799 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 15, 45, 486, 516, 1191, 1221 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 621, 995 |
| Bse1I | ACTGG | 5 cut(s) | 25, 58, 1368, 1662, 3204 |
| Bse3DI | GCAATG | 2 cut(s) | 2259, 2472 |
| Bse8I | GATNNNNATC | 2 cut(s) | 681, 2247 |
| BseBI | CCWGG | 2 cut(s) | 1716, 1728 |
| BseCI | ATCGAT | 1 cut(s) | 182 |
| BseDI | CCNNGG | 7 cut(s) | 802, 850, 1492, 1777, 2518, 2778, 2799 |
| BseGI | GGATG | 8 cut(s) | 403, 709, 821, 1066, 1834, 1976, 2070, 2113 |
| BseJI | GATNNNNATC | 2 cut(s) | 681, 2247 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 621, 995 |
| BseMI | GCAATG | 2 cut(s) | 2259, 2472 |
| BseMII | CTCAG | 9 cut(s) | 87, 104, 432, 462, 654, 1701, 1730, 2289, 3189 |
| BseNI | ACTGG | 5 cut(s) | 25, 58, 1368, 1662, 3204 |
| BseRI | GAGGAG | 5 cut(s) | 507, 779, 782, 955, 1212 |
| BseXI | GCAGC | 3 cut(s) | 1794, 2276, 3050 |
| BseYI | CCCAGC | 2 cut(s) | 1132, 2267 |
| BsgI | GTGCAG | 2 cut(s) | 1793, 2833 |
| Bsh1236I | CGCG | 3 cut(s) | 189, 191, 2565 |
| Bsh1285I | CGRYCG | 1 cut(s) | 635 |
| BshFI | GGCC | 4 cut(s) | 1621, 1961, 2825, 3203 |
| BshVI | ATCGAT | 1 cut(s) | 182 |
| BsiEI | CGRYCG | 1 cut(s) | 635 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2121, 2349 |
| BsiHKCI | CYCGRG | 2 cut(s) | 851, 2519 |
| BsiSI | CCGG | 1 cut(s) | 1984 |
| BslFI | GGGAC | 4 cut(s) | 1188, 1234, 1861, 2788 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 621, 995 |
| BsmAI | GTCTC | 1 cut(s) | 489 |
| BsmFI | GGGAC | 4 cut(s) | 1188, 1234, 1861, 2788 |
| BsmI | GAATGC | 2 cut(s) | 1402, 2316 |
| BsnI | GGCC | 4 cut(s) | 1621, 1961, 2825, 3203 |
| BsoBI | CYCGRG | 2 cut(s) | 851, 2519 |
| Bsp119I | TTCGAA | 1 cut(s) | 2320 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1304, 2121, 2349 |
| Bsp19I | CCATGG | 2 cut(s) | 1777, 2799 |
| BspACI | CCGC | 3 cut(s) | 1217, 1804, 2565 |
| BspANI | GGCC | 4 cut(s) | 1621, 1961, 2825, 3203 |
| BspCNI | CTCAG | 9 cut(s) | 88, 103, 433, 463, 655, 1702, 1731, 2290, 3190 |
| BspDI | ATCGAT | 1 cut(s) | 182 |
| BspFNI | CGCG | 3 cut(s) | 189, 191, 2565 |
| BspHI | TCATGA | 3 cut(s) | 1392, 2029, 2743 |
| BspLI | GGNNCC | 6 cut(s) | 1563, 1632, 1725, 2675, 2776, 3008 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspMI | ACCTGC | 2 cut(s) | 527, 2379 |
| BspPI | GGATC | 5 cut(s) | 429, 1258, 1625, 1638, 2750 |
| BspT104I | TTCGAA | 1 cut(s) | 2320 |
| BsrDI | GCAATG | 2 cut(s) | 2259, 2472 |
| BsrI | ACTGG | 5 cut(s) | 25, 58, 1368, 1662, 3204 |
| BssECI | CCNNGG | 7 cut(s) | 802, 850, 1492, 1777, 2518, 2778, 2799 |
| BssSI | CACGAG | 1 cut(s) | 2120 |
| BssT1I | CCWWGG | 5 cut(s) | 802, 1492, 1777, 2778, 2799 |
| Bst2BI | CACGAG | 1 cut(s) | 2120 |
| Bst2UI | CCWGG | 2 cut(s) | 1716, 1728 |
| Bst4CI | ACNGT | 9 cut(s) | 271, 500, 633, 925, 1580, 1610, 2413, 2636, 2751 |
| Bst6I | CTCTTC | 7 cut(s) | 360, 1425, 2031, 2523, 2565, 2701, 3093 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 533, 1598, 2847, 3182 |
| BstBI | TTCGAA | 1 cut(s) | 2320 |
| BstC8I | GCNNGC | 7 cut(s) | 1041, 1279, 1323, 1402, 2407, 2721, 2986 |
| BstDSI | CCRYGG | 2 cut(s) | 1777, 2799 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 619 |
| BstF5I | GGATG | 8 cut(s) | 403, 709, 821, 1066, 1834, 1976, 2070, 2113 |
| BstFNI | CGCG | 3 cut(s) | 189, 191, 2565 |
| BstHHI | GCGC | 1 cut(s) | 191 |
| BstMAI | GTCTC | 1 cut(s) | 489 |
| BstMCI | CGRYCG | 1 cut(s) | 635 |
| BstNI | CCWGG | 2 cut(s) | 1716, 1728 |
| BstNSI | RCATGY | 5 cut(s) | 531, 1043, 1325, 1404, 2845 |
| BstSCI | CCNGG | 2 cut(s) | 1714, 1726 |
| BstSFI | CTRYAG | 2 cut(s) | 534, 708 |
| BstUI | CGCG | 3 cut(s) | 189, 191, 2565 |
| BstV1I | GCAGC | 3 cut(s) | 1794, 2276, 3050 |
| BstX2I | RGATCY | 3 cut(s) | 99, 569, 1630 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 833, 881 |
| BstYI | RGATCY | 3 cut(s) | 99, 569, 1630 |
| Bsu15I | ATCGAT | 1 cut(s) | 182 |
| BsuI | GTATCC | 1 cut(s) | 1905 |
| BsuRI | GGCC | 4 cut(s) | 1621, 1961, 2825, 3203 |
| BsuTUI | ATCGAT | 1 cut(s) | 182 |
| BtgI | CCRYGG | 2 cut(s) | 1777, 2799 |
| BtsCI | GGATG | 8 cut(s) | 403, 709, 821, 1066, 1834, 1976, 2070, 2113 |
| BtsI | GCAGTG | 1 cut(s) | 918 |
| BtsIMutI | CAGTG | 7 cut(s) | 505, 753, 918, 2409, 2435, 2770, 2889 |
| BveI | ACCTGC | 2 cut(s) | 527, 2379 |
| Cac8I | GCNNGC | 7 cut(s) | 1041, 1279, 1323, 1402, 2407, 2721, 2986 |
| CciI | TCATGA | 3 cut(s) | 1392, 2029, 2743 |
| CfoI | GCGC | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 8 cut(s) | 1454, 1496, 1960, 2056, 2196, 2674, 2775, 2824 |
| ClaI | ATCGAT | 1 cut(s) | 182 |
| CseI | GACGC | 1 cut(s) | 180 |
| Csp6I | GTAC | 5 cut(s) | 12, 51, 1186, 2845, 3170 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1081, 1116 |
| CviQI | GTAC | 5 cut(s) | 12, 51, 1186, 2845, 3170 |
| DraI | TTTAAA | 2 cut(s) | 201, 1464 |
| DraIII | CACNNNGTG | 2 cut(s) | 1385, 3182 |
| Eam1104I | CTCTTC | 7 cut(s) | 360, 1425, 2031, 2523, 2565, 2701, 3093 |
| EarI | CTCTTC | 7 cut(s) | 360, 1425, 2031, 2523, 2565, 2701, 3093 |
| Ecl136II | GAGCTC | 2 cut(s) | 2119, 2347 |
| Eco130I | CCWWGG | 5 cut(s) | 802, 1492, 1777, 2778, 2799 |
| Eco24I | GRGCYC | 3 cut(s) | 1304, 2121, 2349 |
| Eco47I | GGWCC | 6 cut(s) | 1454, 1496, 2056, 2196, 2674, 2775 |
| Eco53kI | GAGCTC | 2 cut(s) | 2119, 2347 |
| Eco57I | CTGAAG | 5 cut(s) | 662, 1062, 1872, 2517, 2682 |
| Eco88I | CYCGRG | 2 cut(s) | 851, 2519 |
| EcoICRI | GAGCTC | 2 cut(s) | 2119, 2347 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 619 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2674 |
| EcoRI | GAATTC | 2 cut(s) | 1568, 2441 |
| EcoRII | CCWGG | 2 cut(s) | 1714, 1726 |
| EcoT14I | CCWWGG | 5 cut(s) | 802, 1492, 1777, 2778, 2799 |
| EcoT22I | ATGCAT | 3 cut(s) | 1041, 1402, 2318 |
| EcoT38I | GRGCYC | 3 cut(s) | 1304, 2121, 2349 |
| ErhI | CCWWGG | 5 cut(s) | 802, 1492, 1777, 2778, 2799 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1422, 1454 |
| FaqI | GGGAC | 4 cut(s) | 1188, 1234, 1861, 2788 |
| FauI | CCCGC | 1 cut(s) | 1210 |
| FauNDI | CATATG | 2 cut(s) | 754, 3059 |
| FbaI | TGATCA | 2 cut(s) | 682, 2425 |
| Fnu4HI | GCNGC | 4 cut(s) | 1805, 1808, 2265, 3039 |
| FokI | GGATG | 8 cut(s) | 410, 716, 808, 1073, 1841, 1983, 2057, 2120 |
| FriOI | GRGCYC | 3 cut(s) | 1304, 2121, 2349 |
| Fsp4HI | GCNGC | 4 cut(s) | 1805, 1808, 2265, 3039 |
| GlaI | GCGC | 1 cut(s) | 190 |
| GluI | GCNGC | 4 cut(s) | 1805, 1808, 2265, 3039 |
| GsaI | CCCAGC | 2 cut(s) | 1136, 2271 |
| GsuI | CTGGAG | 3 cut(s) | 42, 1385, 1893 |
| HaeIII | GGCC | 4 cut(s) | 1621, 1961, 2825, 3203 |
| HapII | CCGG | 1 cut(s) | 1984 |
| HgaI | GACGC | 1 cut(s) | 180 |
| HhaI | GCGC | 1 cut(s) | 191 |
| Hin6I | GCGC | 1 cut(s) | 189 |
| HinP1I | GCGC | 1 cut(s) | 189 |
| HincII | GTYRAC | 4 cut(s) | 322, 627, 1707, 2691 |
| HindII | GTYRAC | 4 cut(s) | 322, 627, 1707, 2691 |
| HpaII | CCGG | 1 cut(s) | 1984 |
| Hpy166II | GTNNAC | 8 cut(s) | 322, 627, 948, 1186, 1707, 2691, 2866, 3170 |
| Hpy8I | GTNNAC | 8 cut(s) | 322, 627, 948, 1186, 1707, 2691, 2866, 3170 |
| Hpy99I | CGWCG | 1 cut(s) | 3098 |
| HpyCH4III | ACNGT | 9 cut(s) | 271, 500, 633, 925, 1580, 1610, 2413, 2636, 2751 |
| HpyCH4IV | ACGT | 3 cut(s) | 1952, 2467, 3015 |
| HpySE526I | ACGT | 3 cut(s) | 1952, 2467, 3015 |
| HspAI | GCGC | 1 cut(s) | 189 |
| Ksp22I | TGATCA | 2 cut(s) | 682, 2425 |
| LmnI | GCTCC | 5 cut(s) | 769, 1199, 1561, 2352, 2488 |
| Lsp1109I | GCAGC | 3 cut(s) | 1794, 2276, 3050 |
| LweI | GCATC | 7 cut(s) | 210, 627, 694, 1588, 2278, 2303, 2997 |
| MaeII | ACGT | 3 cut(s) | 1952, 2467, 3015 |
| MaeIII | GTNAC | 6 cut(s) | 1081, 1676, 2338, 2468, 2582, 2963 |
| MfeI | CAATTG | 1 cut(s) | 2292 |
| MflI | RGATCY | 3 cut(s) | 99, 569, 1630 |
| MhlI | GDGCHC | 3 cut(s) | 1304, 2121, 2349 |
| MlyI | GAGTC | 5 cut(s) | 122, 164, 317, 1376, 1754 |
| MmeI | TCCRAC | 3 cut(s) | 104, 567, 1432 |
| Mph1103I | ATGCAT | 3 cut(s) | 1041, 1402, 2318 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1044, 2079, 3086 |
| MspA1I | CMGCKG | 1 cut(s) | 2267 |
| MspI | CCGG | 1 cut(s) | 1984 |
| MspR9I | CCNGG | 2 cut(s) | 1716, 1728 |
| MunI | CAATTG | 1 cut(s) | 2292 |
| Mva1269I | GAATGC | 2 cut(s) | 1402, 2316 |
| MvaI | CCWGG | 2 cut(s) | 1716, 1728 |
| MvnI | CGCG | 3 cut(s) | 189, 191, 2565 |
| NcoI | CCATGG | 2 cut(s) | 1777, 2799 |
| NdeI | CATATG | 2 cut(s) | 754, 3059 |
| NlaIV | GGNNCC | 6 cut(s) | 1563, 1632, 1725, 2675, 2776, 3008 |
| NmuCI | GTSAC | 2 cut(s) | 2338, 2468 |
| NsiI | ATGCAT | 3 cut(s) | 1041, 1402, 2318 |
| NspI | RCATGY | 5 cut(s) | 531, 1043, 1325, 1404, 2845 |
| NspV | TTCGAA | 1 cut(s) | 2320 |
| PaeI | GCATGC | 3 cut(s) | 1043, 1325, 1404 |
| PagI | TCATGA | 3 cut(s) | 1392, 2029, 2743 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 188 |
| PctI | GAATGC | 2 cut(s) | 1402, 2316 |
| PfeI | GAWTC | 6 cut(s) | 184, 338, 977, 1374, 2768, 2889 |
| PflFI | GACNNNGTC | 2 cut(s) | 631, 1022 |
| PfoI | TCCNGGA | 1 cut(s) | 1726 |
| PkrI | GCNGC | 4 cut(s) | 1806, 1809, 2266, 3040 |
| PleI | GAGTC | 5 cut(s) | 121, 163, 317, 1375, 1753 |
| PpsI | GAGTC | 5 cut(s) | 121, 163, 317, 1375, 1753 |
| PpuMI | RGGWCCY | 1 cut(s) | 2674 |
| PsiI | TTATAA | 1 cut(s) | 2646 |
| Psp124BI | GAGCTC | 2 cut(s) | 2121, 2349 |
| Psp1406I | AACGTT | 1 cut(s) | 1952 |
| Psp5II | RGGWCCY | 1 cut(s) | 2674 |
| Psp6I | CCWGG | 2 cut(s) | 1714, 1726 |
| PspFI | CCCAGC | 2 cut(s) | 1132, 2267 |
| PspGI | CCWGG | 2 cut(s) | 1714, 1726 |
| PspN4I | GGNNCC | 6 cut(s) | 1563, 1632, 1725, 2675, 2776, 3008 |
| PspPI | GGNCC | 8 cut(s) | 1454, 1496, 1960, 2056, 2196, 2674, 2775, 2824 |
| PspPPI | RGGWCCY | 1 cut(s) | 2674 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 3 cut(s) | 99, 569, 1630 |
| PsyI | GACNNNGTC | 2 cut(s) | 631, 1022 |
| PvuII | CAGCTG | 1 cut(s) | 2267 |
| RsaI | GTAC | 5 cut(s) | 13, 52, 1187, 2846, 3171 |
| RsaNI | GTAC | 5 cut(s) | 12, 51, 1186, 2845, 3170 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1044, 2079, 3086 |
| SacI | GAGCTC | 2 cut(s) | 2121, 2349 |
| SatI | GCNGC | 4 cut(s) | 1805, 1808, 2265, 3039 |
| Sau96I | GGNCC | 8 cut(s) | 1454, 1496, 1960, 2056, 2196, 2674, 2775, 2824 |
| SbfI | CCTGCAGG | 1 cut(s) | 538 |
| SchI | GAGTC | 5 cut(s) | 122, 164, 317, 1376, 1754 |
| ScrFI | CCNGG | 2 cut(s) | 1716, 1728 |
| SdaI | CCTGCAGG | 1 cut(s) | 538 |
| SduI | GDGCHC | 3 cut(s) | 1304, 2121, 2349 |
| SfaNI | GCATC | 7 cut(s) | 210, 627, 694, 1588, 2278, 2303, 2997 |
| SfcI | CTRYAG | 2 cut(s) | 534, 708 |
| SfuI | TTCGAA | 1 cut(s) | 2320 |
| SinI | GGWCC | 6 cut(s) | 1454, 1496, 2056, 2196, 2674, 2775 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1044, 2079, 3086 |
| SmlI | CTYRAG | 5 cut(s) | 431, 776, 891, 1169, 2483 |
| SmoI | CTYRAG | 5 cut(s) | 431, 776, 891, 1169, 2483 |
| SphI | GCATGC | 3 cut(s) | 1043, 1325, 1404 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 538 |
| SsiI | CCGC | 3 cut(s) | 1217, 1804, 2565 |
| SspI | AATATT | 3 cut(s) | 2207, 2590, 2715 |
| SstI | GAGCTC | 2 cut(s) | 2121, 2349 |
| StyD4I | CCNGG | 2 cut(s) | 1714, 1726 |
| StyI | CCWWGG | 5 cut(s) | 802, 1492, 1777, 2778, 2799 |
| TaaI | ACNGT | 9 cut(s) | 271, 500, 633, 925, 1580, 1610, 2413, 2636, 2751 |
| TaiI | ACGT | 3 cut(s) | 1955, 2470, 3018 |
| TaqI | TCGA | 8 cut(s) | 182, 485, 635, 1026, 1195, 1314, 2320, 2991 |
| TaqII | GACCGA | 2 cut(s) | 2357, 3107 |
| TatI | WGTACW | 2 cut(s) | 1185, 2844 |
| TauI | GCSGC | 1 cut(s) | 1807 |
| TfiI | GAWTC | 6 cut(s) | 184, 338, 977, 1374, 2768, 2889 |
| TscAI | CASTG | 7 cut(s) | 505, 753, 918, 2416, 2435, 2770, 2889 |
| TseFI | GTSAC | 2 cut(s) | 2338, 2468 |
| TseI | GCWGC | 3 cut(s) | 1807, 2264, 3038 |
| Tsp45I | GTSAC | 2 cut(s) | 2338, 2468 |
| TspGWI | ACGGA | 1 cut(s) | 1572 |
| TspRI | CASTG | 7 cut(s) | 505, 753, 918, 2416, 2435, 2770, 2889 |
| Tth111I | GACNNNGTC | 2 cut(s) | 631, 1022 |
| VpaK11BI | GGWCC | 6 cut(s) | 1454, 1496, 2056, 2196, 2674, 2775 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 619 |
| XapI | RAATTY | 7 cut(s) | 26, 1115, 1126, 1568, 2441, 2596, 3071 |
| XbaI | TCTAGA | 2 cut(s) | 158, 566 |
| XceI | RCATGY | 5 cut(s) | 531, 1043, 1325, 1404, 2845 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2834 |
| Zsp2I | ATGCAT | 3 cut(s) | 1041, 1402, 2318 |