Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Forward (+)

54157876 .. 54165891

Gene Structure 8016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2976 bp

ATGGCGAACGGAACGGATTCCGACGAGTTCGTGGTGCGGTCTCGGGTCCGGCCGGGGCTGAAGCGCGAATTGACCTTCGCATTAGCTCAGGCGGAGGTCTCCTGTTCGTTGGGCCGGACCCGGGCCAGGAAGGCCCAGAATGAGCTTCCGGTGAATGTGAACCCTAAGAGATTGAAGAAGGAGGCGAAAAGCGAGCCGCAGAAGGACGACGAGGAGGAGAAGCCGGCGAGTGGTGGCGAGAATGTGAAGGTTGTTGAGGATTTGGTGGAGGCTATAAGCGAAGAAGATGCGAAGAGCGATGTGGTGGATCTAATGAGCGACGACGAGCCTAGAAGCCATGTGGCGGAGTCCAAGGTCGTCACCGAAGACGAATTGAAGAACGGTGTTGTAGACATGGCTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAATGAAGATGACGCTAAGCAGGAGCAATTGAAGATGGAGGAGCCGGAAAAGCCCGATTTGATTGGTAATGGTGAAAAGGTGGAACCGGAAAAGCCCAATTCGATTGAAAATGGTGAAAAGGTGGAAGGAGAAGTGATTGAAAAGCCGCTGAGGAGGTACACTCGGTCGGCATCGAGGCGGAAGAGCCAAGTAGCTGAGCCTAAGCTGACAGAGAAGGTCTGCGAAGACGAAATAAAGAATGGTGCAGTGGATATGACCGGCTGCGGTGGTGATTCCGTGAATGAAGATGAACCTAAGCAGGAGGAACAGCCTTTGGTGAAACTAGAAATCCTCAATTTGATTGAAAAGGGTGATACGGTTGAATGTGAGGTGAGTGAAACGCCGCAGAGGCGGTACACTCGGTCAGCATTGAAGCTTAAAAGCCAAGTGGCTGAGTCTATCTTGAAGGTCAGTGAAGATGAAATGAAGAATGGTGTAGTGGATATGGCTATTGATGATGAACCCAATACTGGTAGTGTTGGTGATTCTGTGGCTGAAGATGAGCCTAGGCAGGAGGAATTGAAGAAGAGTGAATCTGAACAGCCATTGGTGAAACTAGAAATCCTCGATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGCGAATGAAAAGCCGCAGAGGAGGTTCACTCGGTCAACATTGAACACAGAGAATGAAGCCCTAGACTTCAATTCGGTTTCCCAGAAAAGCACACCAGCTGAGGTTGAGACGAAAATGCGGATGACTGTGAAAAAGTTTAGACTGTTAGAGCTTCTTGAAACTGGTATTCTTGAGGGGCAGCGGGTGACTTACCTTAAAGGATCAAAGGGAAGAAAAACTGCAGAGAAAGGGCTTACAGGAGTGATTACTGGTTCTGGTATAATGTGTCACTGTGAGCGATGCAATGGAACTGATGGTGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGTGCAAATAAACGTCCTCCTGAGTACATACATCTTGAGAACGGGAAGACCCTTCGGGATGTCCTAACTGCATGCAATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTCGCTGTTGGTTGCTCATCTATAAAGACGTGTACCATCTGCCTCAATTGCAAAGGATCTATTTGCAAAGATGATACTAGATCAGCAATGCTTCTTTGTTGCTCCTGCTTGGACTTGAAAGAGACCCAAGCTAAGCTATCTGTAGCTGCGAAACCTTCTGAAGTTGCAAACGATTGTTCTGAATTACCAAAGCCGGTTTCAGTTGCAAACTGTCCTGACACCGTTCCAGAGTGTCCTGACATTGTCCTAGAGTGCCCTAACGCCATTTCAAGGTGTCATGATACTGTTTCAAAGTGTCTCGGTACCATTTCAAATTGCCCTGATTCTTCTCCTAAGTGTCCTGATACTGTGCTGAAGAGTAGGTCGTCAGCAAGTAAGAGTCGAGGAAGAGTAACCAGAAAGGATACCGGGATGCACAAGTTGGTTTTTGAGGATAATTTCTTACCGGATGGAACTGAAGTAGTTTATGTTTCGGGTGGACAGAGACGGGCTGTCGGCTATAAAAAGGGGTCTGGCATCATGTGTAGTTGCTGCAATACAGAGGTCAGTCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCACGTCGCAAACCCTACCACAACATTTTCATATCTAATGGGGTATCTCTTCACGAGTTGGCATTAAAGCTTTCAAAAAAGCGGAGGTTGTCTACCGAGGACAGTGATGACCTTTGCTTCATCTGCAGAAAAGGAGGAAAGGTCATATGCTGTGATAGTTGCCCAAGGGTTTTTCATGCAGGGTGCCTTTCTCTACCAACTGTCCCTAATGGTACTTGGTACTGTAAACATTGCCAGACTATGTTCGATAGAGACATAGATGCAGAGCGTAATGTCAATGCTGTTGCAGCTGGAAGGGTTGCAGGAGTTGATCCTATAAAACAAATAACCAACCGATGCATTCGTATTGTCACAGCTTGCGATGAAAAGTTCGGTGGATGTGCACTGTGCAGAGGCCATGAGTTCAAAAACGAGGGTTTTGGTCCTGGGACAGTTATTTTATGTGATCAGTGTGAAAGGGAATTTCATGTCGGCTGTTTGAAGGAAAAAGGAATTGTAGATTTGAAGGAAGTTCCAAAAGAGAAGTGGTTCTGTCACCCAGATTGTCTCAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGCAACAGAAGCTTCCAGAGTCCCTCTTGAATGTTGTAAGGAAGAAAAAGAATGAAAAAGGTCCAGCAAAGGGGGGTCTTGATATAAAATGGAGGGTGCTTAGTGGGAAAATGTCTAATGATGATGAAAGTTTACAGTTGCTTTCCAAGGCTCTTGCCATATTTCATGATCAATTTGCTCCCATTGTTGATAAGGAATCAGGCCTCGACTTCATTAGGGAAATGCTTTATGGAGGGGCCATAAAGACTCAAGATTTTGCTGGGATGTACTGTGCTATAGTTACACTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

991

Amino Acids

109.05

Weight (kDa)

5.58

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	438 - 493	7.7e-12	Tify domain binding domain
TDBD	PF16135	674 - 719	6.9e-16	Tify domain binding domain
PHD-1st_NSD	PF23011	735 - 778	4.6e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	738 - 777	9.2e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1817
AccB1I	GGYRCC	2 cut(s)	1817, 2280
AccI	GTMKAC	2 cut(s)	390, 2189
AccII	CGCG	1 cut(s)	66
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	4 cut(s)	315, 1282, 1579, 2402
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	2558
AcuI	CTGAAG	5 cut(s)	80, 987, 1695, 1889, 1992
AfaI	GTAC	8 cut(s)	590, 827, 1430, 1549, 1819, 2311, 2318, 2951
AfiI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1785, 2753
AflIII	ACRYGT	1 cut(s)	1544
AhdI	GACNNNNNGTC	1 cut(s)	2006
AjiI	CACGTC	2 cut(s)	1545, 2102
AjnI	CCWGG	2 cut(s)	125, 2521
AjuI	GAANNNNNNNTTGG	2 cut(s)	1696, 1728
AleI	CACNNNNGTG	1 cut(s)	2971
Alw21I	GWGCWC	1 cut(s)	2482
Alw26I	GTCTC	8 cut(s)	45, 103, 1175, 1631, 1817, 1993, 2343, 2648
Alw44I	GTGCAC	1 cut(s)	2478
AlwI	GGATC	4 cut(s)	315, 1282, 1579, 2402
Ama87I	CYCGRG	2 cut(s)	42, 120
AoxI	GGCC	7 cut(s)	50, 112, 123, 132, 2491, 2884, 2919
ApaLI	GTGCAC	1 cut(s)	2478
ApeKI	GCWGC	5 cut(s)	693, 1252, 1661, 2046, 2384
ApoI	RAATTY	1 cut(s)	2558
Asp700I	GAANNNNTTC	2 cut(s)	16, 2624
Asp718I	GGTACC	1 cut(s)	1817
AspA2I	CCTAGG	1 cut(s)	977
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2519, 2744, 2919
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 1924
AvaI	CYCGRG	2 cut(s)	42, 120
AvaII	GGWCC	4 cut(s)	46, 117, 2519, 2744
AvrII	CCTAGG	1 cut(s)	977
BaeGI	GKGCMC	2 cut(s)	1772, 2482
BanI	GGYRCC	2 cut(s)	1817, 2280
BauI	CACGAG	1 cut(s)	2150
BbsI	GAAGAC	3 cut(s)	372, 663, 1457
Bbv12I	GWGCWC	1 cut(s)	2482
BbvCI	CCTCAGC	2 cut(s)	581, 1173
BbvI	GCAGC	5 cut(s)	680, 1264, 1648, 2033, 2396
BccI	CCATC	4 cut(s)	460, 1361, 1559, 1958
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	127, 2523
BciVI	GTATCC	1 cut(s)	1912
BclI	TGATCA	2 cut(s)	2542, 2851
BcnI	CCSGG	4 cut(s)	54, 121, 122, 1924
BcoDI	GTCTC	8 cut(s)	45, 103, 1175, 1631, 1817, 1993, 2343, 2648
BfaI	CTAG	7 cut(s)	330, 755, 978, 1028, 1136, 1593, 1763
BfmI	CTRYAG	4 cut(s)	1293, 1656, 2221, 2958
BfuI	GTATCC	1 cut(s)	1912
BglI	GCCNNNNNGGC	2 cut(s)	131, 820
BisI	GCNGC	9 cut(s)	197, 578, 694, 815, 1088, 1253, 1662, 2047, 2385
BlnI	CCTAGG	1 cut(s)	977
BlpI	GCTNAGC	3 cut(s)	447, 627, 1647
BlsI	GCNGC	9 cut(s)	198, 579, 695, 816, 1089, 1254, 1663, 2048, 2386
Bme1390I	CCNGG	6 cut(s)	54, 121, 122, 127, 1924, 2523
Bme18I	GGWCC	4 cut(s)	46, 117, 2519, 2744
BmeRI	GACNNNNNGTC	1 cut(s)	2006
BmeT110I	CYCGRG	2 cut(s)	42, 120
BmgBI	CACGTC	2 cut(s)	1545, 2102
BmgT120I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2519, 2744, 2919
BmiI	GGNNCC	7 cut(s)	47, 119, 474, 516, 1819, 2282, 2920
BmrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 1924, 2523
BmsI	GCATC	7 cut(s)	277, 611, 1343, 1917, 2040, 2347, 2423
BpiI	GAAGAC	3 cut(s)	372, 663, 1457
BplI	GAGNNNNNCTC	4 cut(s)	577, 609, 1087, 1119
Bpu10I	CCTNAGC	5 cut(s)	87, 581, 633, 726, 1173
Bpu1102I	GCTNAGC	3 cut(s)	447, 627, 1647
BpuEI	CTTGAG	4 cut(s)	1265, 1460, 2916, 2954
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 1924
BsaI	GGTCTC	3 cut(s)	45, 103, 1631
BsaJI	CCNNGG	9 cut(s)	53, 120, 351, 977, 1497, 2193, 2261, 2522, 2829
BsaWI	WCCGGW	3 cut(s)	148, 517, 1960
BsaXI	ACNNNNNCTCC	2 cut(s)	2223, 2253
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1785, 2753
Bse118I	RCCGGY	3 cut(s)	223, 689, 1708
Bse1I	ACTGG	3 cut(s)	946, 1240, 1327
Bse3DI	GCAATG	3 cut(s)	1363, 1608, 2326
BseBI	CCWGG	2 cut(s)	127, 2523
BseDI	CCNNGG	9 cut(s)	53, 120, 351, 977, 1497, 2193, 2261, 2522, 2829
BseGI	GGATG	6 cut(s)	1200, 1468, 1932, 1969, 2480, 2952
BseLI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1785, 2753
BseMI	GCAATG	3 cut(s)	1363, 1608, 2326
BseMII	CTCAG	7 cut(s)	101, 572, 618, 855, 1164, 1416, 2659
BseNI	ACTGG	3 cut(s)	946, 1240, 1327
BseRI	GAGGAG	5 cut(s)	227, 230, 485, 598, 1108
BseSI	GKGCMC	2 cut(s)	1772, 2482
BseX3I	CGGCCG	1 cut(s)	50
BseXI	GCAGC	5 cut(s)	680, 1264, 1648, 2033, 2396
BseYI	CCCAGC	1 cut(s)	2942
BsgI	GTGCAG	2 cut(s)	696, 2506
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	2 cut(s)	53, 599
BshFI	GGCC	7 cut(s)	52, 114, 125, 134, 2493, 2886, 2921
BshNI	GGYRCC	2 cut(s)	1817, 2280
BsiEI	CGRYCG	2 cut(s)	53, 599
BsiHKAI	GWGCWC	1 cut(s)	2482
BsiHKCI	CYCGRG	2 cut(s)	42, 120
BslFI	GGGAC	4 cut(s)	2049, 2285, 2539, 2689
BslI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1785, 2753
BsmAI	GTCTC	8 cut(s)	45, 103, 1175, 1631, 1817, 1993, 2343, 2648
BsmBI	CGTCTC	2 cut(s)	1175, 1993
BsmFI	GGGAC	4 cut(s)	2049, 2285, 2539, 2689
BsmI	GAATGC	1 cut(s)	2436
BsnI	GGCC	7 cut(s)	52, 114, 125, 134, 2493, 2886, 2921
Bso31I	GGTCTC	3 cut(s)	45, 103, 1631
BsoBI	CYCGRG	2 cut(s)	42, 120
Bsp1286I	GDGCHC	2 cut(s)	1772, 2482
Bsp143I	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
Bsp1720I	GCTNAGC	3 cut(s)	447, 627, 1647
BspANI	GGCC	7 cut(s)	52, 114, 125, 134, 2493, 2886, 2921
BspCNI	CTCAG	7 cut(s)	100, 573, 619, 856, 1165, 1417, 2658
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	1792, 2848
BspLI	GGNNCC	7 cut(s)	47, 119, 474, 516, 1819, 2282, 2920
BspMAI	CTGCAG	2 cut(s)	1297, 2225
BspPI	GGATC	4 cut(s)	315, 1282, 1579, 2402
BspQI	GCTCTTC	2 cut(s)	287, 608
BspT107I	GGYRCC	2 cut(s)	1817, 2280
BspTNI	GGTCTC	3 cut(s)	45, 103, 1631
BsrDI	GCAATG	3 cut(s)	1363, 1608, 2326
BsrFI	RCCGGY	3 cut(s)	223, 689, 1708
BsrI	ACTGG	3 cut(s)	946, 1240, 1327
BssAI	RCCGGY	3 cut(s)	223, 689, 1708
BssECI	CCNNGG	9 cut(s)	53, 120, 351, 977, 1497, 2193, 2261, 2522, 2829
BssMI	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
BssSI	CACGAG	1 cut(s)	2150
BssT1I	CCWWGG	5 cut(s)	351, 977, 1497, 2261, 2829
Bst2BI	CACGAG	1 cut(s)	2150
Bst2UI	CCWGG	2 cut(s)	127, 2523
Bst6I	CTCTTC	6 cut(s)	287, 608, 992, 1865, 1897, 2151
BstC8I	GCNNGC	7 cut(s)	194, 225, 1398, 1477, 1518, 2089, 2455
BstF5I	GGATG	6 cut(s)	1200, 1468, 1932, 1969, 2480, 2952
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	7 cut(s)	310, 1277, 1574, 1598, 2410, 2545, 2854
BstMAI	GTCTC	8 cut(s)	45, 103, 1175, 1631, 1817, 1993, 2343, 2648
BstMBI	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
BstMCI	CGRYCG	2 cut(s)	53, 599
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 481, 820, 1406, 1563, 2220, 2384, 2692
BstNI	CCWGG	2 cut(s)	127, 2523
BstNSI	RCATGY	2 cut(s)	1400, 1479
BstSCI	CCNGG	6 cut(s)	52, 119, 120, 125, 1922, 2521
BstSFI	CTRYAG	4 cut(s)	1293, 1656, 2221, 2958
BstSLI	GKGCMC	2 cut(s)	1772, 2482
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	680, 1264, 1648, 2033, 2396
BstV2I	GAAGAC	3 cut(s)	372, 663, 1457
BstX2I	RGATCY	2 cut(s)	307, 1571
BstYI	RGATCY	2 cut(s)	307, 1571
BstZI	CGGCCG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1912
BsuRI	GGCC	7 cut(s)	52, 114, 125, 134, 2493, 2886, 2921
BtgZI	GCGATG	3 cut(s)	312, 1366, 2472
BtrI	CACGTC	2 cut(s)	1545, 2102
BtsCI	GGATG	6 cut(s)	1200, 1468, 1932, 1969, 2480, 2952
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	6 cut(s)	684, 889, 1342, 2206, 2480, 2552
Cac8I	GCNNGC	7 cut(s)	194, 225, 1398, 1477, 1518, 2089, 2455
CciI	TCATGA	2 cut(s)	1792, 2848
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	3 cut(s)	223, 689, 1708
Cfr13I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2519, 2744, 2919
Cfr9I	CCCGGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	8 cut(s)	589, 826, 1429, 1548, 1818, 2310, 2317, 2950
CviQI	GTAC	8 cut(s)	589, 826, 1429, 1548, 1818, 2310, 2317, 2950
DpnI	GATC	7 cut(s)	309, 1276, 1573, 1597, 2409, 2544, 2853
DpnII	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
DriI	GACNNNNNGTC	1 cut(s)	2006
EaeI	YGGCCR	1 cut(s)	50
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	6 cut(s)	287, 608, 992, 1865, 1897, 2151
Eam1105I	GACNNNNNGTC	1 cut(s)	2006
EarI	CTCTTC	6 cut(s)	287, 608, 992, 1865, 1897, 2151
EciI	GGCGGA	3 cut(s)	107, 359, 625
EclXI	CGGCCG	1 cut(s)	50
Eco130I	CCWWGG	5 cut(s)	351, 977, 1497, 2261, 2829
Eco147I	AGGCCT	1 cut(s)	2886
Eco31I	GGTCTC	3 cut(s)	45, 103, 1631
Eco47I	GGWCC	4 cut(s)	46, 117, 2519, 2744
Eco52I	CGGCCG	1 cut(s)	50
Eco57I	CTGAAG	5 cut(s)	80, 987, 1695, 1889, 1992
Eco88I	CYCGRG	2 cut(s)	42, 120
EcoRII	CCWGG	2 cut(s)	125, 2521
EcoT14I	CCWWGG	5 cut(s)	351, 977, 1497, 2261, 2829
EcoT22I	ATGCAT	1 cut(s)	2438
ErhI	CCWWGG	5 cut(s)	351, 977, 1497, 2261, 2829
Esp3I	CGTCTC	2 cut(s)	1175, 1993
FaqI	GGGAC	4 cut(s)	2049, 2285, 2539, 2689
FauI	CCCGC	1 cut(s)	1248
FauNDI	CATATG	1 cut(s)	2243
FbaI	TGATCA	2 cut(s)	2542, 2851
FblI	GTMKAC	2 cut(s)	390, 2189
Fnu4HI	GCNGC	9 cut(s)	197, 578, 694, 815, 1088, 1253, 1662, 2047, 2385
FokI	GGATG	6 cut(s)	1207, 1475, 1939, 1976, 2487, 2959
Fsp4HI	GCNGC	9 cut(s)	197, 578, 694, 815, 1088, 1253, 1662, 2047, 2385
FspBI	CTAG	7 cut(s)	330, 755, 978, 1028, 1136, 1593, 1763
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	9 cut(s)	197, 578, 694, 815, 1088, 1253, 1662, 2047, 2385
GsaI	CCCAGC	1 cut(s)	2946
HaeIII	GGCC	7 cut(s)	52, 114, 125, 134, 2493, 2886, 2921
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	1110
HindII	GTYRAC	1 cut(s)	1110
HindIII	AAGCTT	3 cut(s)	845, 2165, 2693
Hpy188I	TCNGA	4 cut(s)	22, 1009, 1675, 1696
Hpy99I	CGWCG	5 cut(s)	26, 212, 323, 326, 2106
HpyCH4IV	ACGT	4 cut(s)	417, 1417, 1544, 2101
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 481, 820, 1406, 1563, 2220, 2384, 2692
HpySE526I	ACGT	4 cut(s)	417, 1417, 1544, 2101
HspAI	GCGC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	1821
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Ksp22I	TGATCA	2 cut(s)	2542, 2851
Kzo9I	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
LguI	GCTCTTC	2 cut(s)	287, 608
LmnI	GCTCC	4 cut(s)	454, 472, 1622, 2866
Lsp1109I	GCAGC	5 cut(s)	680, 1264, 1648, 2033, 2396
LweI	GCATC	7 cut(s)	277, 611, 1343, 1917, 2040, 2347, 2423
MaeI	CTAG	7 cut(s)	330, 755, 978, 1028, 1136, 1593, 1763
MaeII	ACGT	4 cut(s)	417, 1417, 1544, 2101
MaeIII	GTNAC	7 cut(s)	358, 1258, 1340, 1906, 2446, 2630, 2962
MalI	GATC	7 cut(s)	309, 1276, 1573, 1597, 2409, 2544, 2853
MboI	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
MfeI	CAATTG	2 cut(s)	458, 1561
MflI	RGATCY	2 cut(s)	307, 1571
MhlI	GDGCHC	2 cut(s)	1772, 2482
MlyI	GAGTC	5 cut(s)	356, 875, 1903, 2711, 2923
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	2438
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	2 cut(s)	16, 2624
MseI	TTAA	3 cut(s)	849, 1269, 2162
MslI	CAYNNNNRTG	2 cut(s)	398, 2971
MspA1I	CMGCKG	4 cut(s)	580, 1172, 1255, 2387
MspR9I	CCNGG	6 cut(s)	54, 121, 122, 127, 1924, 2523
MunI	CAATTG	2 cut(s)	458, 1561
Mva1269I	GAATGC	1 cut(s)	2436
MvaI	CCWGG	2 cut(s)	127, 2523
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	8 cut(s)	131, 481, 820, 1406, 1563, 2220, 2384, 2692
NaeI	GCCGGC	1 cut(s)	225
NciI	CCSGG	4 cut(s)	54, 121, 122, 1924
NdeI	CATATG	1 cut(s)	2243
NdeII	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
NgoMIV	GCCGGC	1 cut(s)	223
NlaIV	GGNNCC	7 cut(s)	47, 119, 474, 516, 1819, 2282, 2920
NmuCI	GTSAC	5 cut(s)	358, 1258, 1340, 2446, 2630
NsiI	ATGCAT	1 cut(s)	2438
NspI	RCATGY	2 cut(s)	1400, 1479
OliI	CACNNNNGTG	1 cut(s)	2971
PaeI	GCATGC	2 cut(s)	1400, 1479
PagI	TCATGA	2 cut(s)	1792, 2848
PceI	AGGCCT	1 cut(s)	2886
PciSI	GCTCTTC	2 cut(s)	287, 608
PctI	GAATGC	1 cut(s)	2436
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	16, 2624
PfeI	GAWTC	6 cut(s)	17, 704, 956, 1004, 1838, 2879
PflFI	GACNNNGTC	1 cut(s)	1757
PkrI	GCNGC	9 cut(s)	198, 579, 695, 816, 1089, 1254, 1663, 2048, 2386
PleI	GAGTC	5 cut(s)	355, 874, 1902, 2710, 2923
PpsI	GAGTC	5 cut(s)	355, 874, 1902, 2710, 2923
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	125, 2521
PspFI	CCCAGC	1 cut(s)	2942
PspGI	CCWGG	2 cut(s)	125, 2521
PspN4I	GGNNCC	7 cut(s)	47, 119, 474, 516, 1819, 2282, 2920
PspPI	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2519, 2744, 2919
PstI	CTGCAG	2 cut(s)	1297, 2225
PsuI	RGATCY	2 cut(s)	307, 1571
PsyI	GACNNNGTC	1 cut(s)	1757
PvuII	CAGCTG	2 cut(s)	1172, 2387
RsaI	GTAC	8 cut(s)	590, 827, 1430, 1549, 1819, 2311, 2318, 2951
RsaNI	GTAC	8 cut(s)	589, 826, 1429, 1548, 1818, 2310, 2317, 2950
RseI	CAYNNNNRTG	2 cut(s)	398, 2971
SapI	GCTCTTC	2 cut(s)	287, 608
SaqAI	TTAA	3 cut(s)	849, 1269, 2162
SatI	GCNGC	9 cut(s)	197, 578, 694, 815, 1088, 1253, 1662, 2047, 2385
Sau3AI	GATC	7 cut(s)	307, 1274, 1571, 1595, 2407, 2542, 2851
Sau96I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2519, 2744, 2919
SchI	GAGTC	5 cut(s)	356, 875, 1903, 2711, 2923
ScrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 1924, 2523
SduI	GDGCHC	2 cut(s)	1772, 2482
SfaNI	GCATC	7 cut(s)	277, 611, 1343, 1917, 2040, 2347, 2423
SfcI	CTRYAG	4 cut(s)	1293, 1656, 2221, 2958
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
SinI	GGWCC	4 cut(s)	46, 117, 2519, 2744
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	398, 2971
SmlI	CTYRAG	4 cut(s)	1244, 1439, 2931, 2969
SmoI	CTYRAG	4 cut(s)	1244, 1439, 2931, 2969
SphI	GCATGC	2 cut(s)	1400, 1479
SseBI	AGGCCT	1 cut(s)	2886
SspMI	CTAG	7 cut(s)	330, 755, 978, 1028, 1136, 1593, 1763
StuI	AGGCCT	1 cut(s)	2886
StyD4I	CCNGG	6 cut(s)	52, 119, 120, 125, 1922, 2521
StyI	CCWWGG	5 cut(s)	351, 977, 1497, 2261, 2829
TaiI	ACGT	4 cut(s)	420, 1420, 1547, 2104
TaqI	TCGA	6 cut(s)	533, 605, 1038, 1897, 2343, 2889
TaqII	GACCGA	3 cut(s)	585, 822, 1095
TatI	WGTACW	2 cut(s)	1428, 2949
TauI	GCSGC	4 cut(s)	199, 580, 817, 1090
TfiI	GAWTC	6 cut(s)	17, 704, 956, 1004, 1838, 2879
Tru1I	TTAA	3 cut(s)	849, 1269, 2162
Tru9I	TTAA	3 cut(s)	849, 1269, 2162
TscAI	CASTG	6 cut(s)	684, 889, 1349, 2206, 2487, 2552
TseFI	GTSAC	5 cut(s)	358, 1258, 1340, 2446, 2630
TseI	GCWGC	5 cut(s)	693, 1252, 1661, 2046, 2384
Tsp45I	GTSAC	5 cut(s)	358, 1258, 1340, 2446, 2630
TspGWI	ACGGA	3 cut(s)	24, 29, 697
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	6 cut(s)	684, 889, 1349, 2206, 2487, 2552
Tth111I	GACNNNGTC	1 cut(s)	1757
VneI	GTGCAC	1 cut(s)	2478
VpaK11BI	GGWCC	4 cut(s)	46, 117, 2519, 2744
XapI	RAATTY	1 cut(s)	2558
XceI	RCATGY	2 cut(s)	1400, 1479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2619
XmaI	CCCGGG	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	977
XmiI	GTMKAC	2 cut(s)	390, 2189
XmnI	GAANNNNTTC	2 cut(s)	16, 2624
XspI	CTAG	7 cut(s)	330, 755, 978, 1028, 1136, 1593, 1763
Zsp2I	ATGCAT	1 cut(s)	2438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.