TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27980 |
| fragaria_vesca | FvH4_3g30510 FvH4_3g30510 FvH4_3g30510 |
| malus_domestica | MD03G1127900.v1.1 MD11G1149500.v1.1 |
| prunus_persica | Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 |
| pyrus_communis | pycom11g12240 |
| rosa_chinensis | RchiOBHm_Chr5g0056471 |
| rosa_laevigata | RLG00000035101 |
| rosa_multiflora | Rmu_sc0002761.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00023850 |
| rosa_rugosa | Rorug05G0300200 |
| rosa_samantha | Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900 |
| rosa_wichuraiana | Rw5G034720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 18 |
| AgsI | TTSAA | 1 cut(s) | 166 |
| AluBI | AGCT | 2 cut(s) | 209, 226 |
| AluI | AGCT | 2 cut(s) | 209, 226 |
| Alw26I | GTCTC | 1 cut(s) | 64 |
| ApeKI | GCWGC | 4 cut(s) | 47, 70, 209, 223 |
| BbvI | GCAGC | 3 cut(s) | 34, 82, 196 |
| BciVI | GTATCC | 1 cut(s) | 132 |
| BclI | TGATCA | 1 cut(s) | 150 |
| BcoDI | GTCTC | 1 cut(s) | 64 |
| BfuI | GTATCC | 1 cut(s) | 132 |
| BisI | GCNGC | 4 cut(s) | 48, 71, 210, 224 |
| BlsI | GCNGC | 4 cut(s) | 49, 72, 211, 225 |
| BmiI | GGNNCC | 1 cut(s) | 97 |
| BmsI | GCATC | 2 cut(s) | 13, 130 |
| BoxI | GACNNNNGTC | 1 cut(s) | 115 |
| BpuEI | CTTGAG | 1 cut(s) | 223 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| Bse3DI | GCAATG | 1 cut(s) | 22 |
| BseGI | GGATG | 2 cut(s) | 4, 178 |
| BseMI | GCAATG | 1 cut(s) | 22 |
| BseMII | CTCAG | 1 cut(s) | 57 |
| BseXI | GCAGC | 3 cut(s) | 34, 82, 196 |
| BsmAI | GTCTC | 1 cut(s) | 64 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp143I | GATC | 1 cut(s) | 150 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 97 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrDI | GCAATG | 1 cut(s) | 22 |
| BssMI | GATC | 1 cut(s) | 150 |
| Bst6I | CTCTTC | 2 cut(s) | 131, 173 |
| BstDEI | CTNAG | 2 cut(s) | 35, 66 |
| BstF5I | GGATG | 2 cut(s) | 4, 178 |
| BstKTI | GATC | 1 cut(s) | 153 |
| BstMAI | GTCTC | 1 cut(s) | 64 |
| BstMBI | GATC | 1 cut(s) | 150 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 115 |
| BstV1I | GCAGC | 3 cut(s) | 34, 82, 196 |
| BsuI | GTATCC | 1 cut(s) | 132 |
| BtsCI | GGATG | 2 cut(s) | 4, 178 |
| Csp6I | GTAC | 1 cut(s) | 17 |
| CviAII | CATG | 2 cut(s) | 44, 74 |
| CviJI | RGCY | 3 cut(s) | 96, 209, 226 |
| CviKI_1 | RGCY | 3 cut(s) | 96, 209, 226 |
| CviQI | GTAC | 1 cut(s) | 17 |
| DdeI | CTNAG | 2 cut(s) | 35, 66 |
| DpnI | GATC | 1 cut(s) | 152 |
| DpnII | GATC | 1 cut(s) | 150 |
| Eam1104I | CTCTTC | 2 cut(s) | 131, 173 |
| EarI | CTCTTC | 2 cut(s) | 131, 173 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco32I | GATATC | 1 cut(s) | 199 |
| EcoRV | GATATC | 1 cut(s) | 199 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 2 cut(s) | 47, 77 |
| FaiI | YATR | 4 cut(s) | 14, 45, 75, 216 |
| FatI | CATG | 2 cut(s) | 43, 73 |
| FbaI | TGATCA | 1 cut(s) | 150 |
| Fnu4HI | GCNGC | 4 cut(s) | 48, 71, 210, 224 |
| FokI | GGATG | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 4 cut(s) | 48, 71, 210, 224 |
| GluI | GCNGC | 4 cut(s) | 48, 71, 210, 224 |
| Hin1II | CATG | 2 cut(s) | 47, 77 |
| HinfI | GANTC | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 3 cut(s) | 9, 67, 110 |
| Hpy188III | TCNNGA | 2 cut(s) | 130, 202 |
| Hpy99I | CGWCG | 1 cut(s) | 121 |
| HpyAV | CCTTC | 1 cut(s) | 123 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 27 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 66 |
| Hsp92II | CATG | 2 cut(s) | 47, 77 |
| Ksp22I | TGATCA | 1 cut(s) | 150 |
| Kzo9I | GATC | 1 cut(s) | 150 |
| LmnI | GCTCC | 1 cut(s) | 101 |
| LpnPI | CCDG | 3 cut(s) | 78, 89, 115 |
| Lsp1109I | GCAGC | 3 cut(s) | 34, 82, 196 |
| LweI | GCATC | 2 cut(s) | 13, 130 |
| MalI | GATC | 1 cut(s) | 152 |
| MboI | GATC | 1 cut(s) | 150 |
| MboII | GAAGA | 4 cut(s) | 89, 118, 190, 199 |
| MluCI | AATT | 2 cut(s) | 28, 87 |
| MlyI | GAGTC | 1 cut(s) | 34 |
| MnlI | CCTC | 1 cut(s) | 174 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| NdeII | GATC | 1 cut(s) | 150 |
| NlaIII | CATG | 2 cut(s) | 47, 77 |
| NlaIV | GGNNCC | 1 cut(s) | 97 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PkrI | GCNGC | 4 cut(s) | 49, 72, 211, 225 |
| PleI | GAGTC | 1 cut(s) | 34 |
| PpsI | GAGTC | 1 cut(s) | 34 |
| PshAI | GACNNNNGTC | 1 cut(s) | 115 |
| PspN4I | GGNNCC | 1 cut(s) | 97 |
| RsaI | GTAC | 1 cut(s) | 18 |
| RsaNI | GTAC | 1 cut(s) | 17 |
| SatI | GCNGC | 4 cut(s) | 48, 71, 210, 224 |
| Sau3AI | GATC | 1 cut(s) | 150 |
| SchI | GAGTC | 1 cut(s) | 34 |
| SetI | ASST | 3 cut(s) | 115, 211, 228 |
| SfaNI | GCATC | 2 cut(s) | 13, 130 |
| SgeI | CNNG | 7 cut(s) | 56, 86, 105, 112, 116, 142, 214 |
| SmlI | CTYRAG | 1 cut(s) | 202 |
| SmoI | CTYRAG | 1 cut(s) | 202 |
| Sse9I | AATT | 2 cut(s) | 28, 87 |
| TasI | AATT | 2 cut(s) | 28, 87 |
| TseI | GCWGC | 4 cut(s) | 47, 70, 209, 223 |
| TspDTI | ATGAA | 2 cut(s) | 11, 90 |
| TspGWI | ACGGA | 2 cut(s) | 88, 185 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |