Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Reverse (-)

29480282 .. 29488288

Gene Structure 8007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3351 bp

ATGGCGAACGGAACGGATTCCGACGAGTTCGTGGTGCGGTCTCGGGTCCGGCCGGGGCTGAAGCGCGAATTGACCTTCGCATTGGCTCAGGCGGAGGTGTCATGTTCGTTGGGCCGGACCCGGGCCAGGAAGGCCCAGAATGAGCTGTCGGTGAATGTGAACCGTAAGAGATTGAAGAAGGAGGCGAAAAGCGAGCCGCAGAAGGACGAGGAGGAGGAGGAGAATGTGAAGGTTGTTGAGGATTTGGTGGAGGCTATAAGCGAAGACGATGCGAAGAGCGATGTGGTGGATCTAATGAGCGACGACGAGCCTAGAAGCCATGTGGCGGAGTCGAAGGTCGTCACCGAAGACGAATTGAAGAACGGTGTTGTAGAGATGGCTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAATGAAGATGAGGCTAAGCAGGAGCAGTTGAAGATGGAGGAGCCGGAAAAGCCCGGTTCGATTGGAATTGGTGAAAAGGTGGATCCGGAAAAGCCCAATTCGATTGAGAATGGTGAAAAGGTGGAAGGAGAGGTGATTGAAAAGCCGCTGAGGAGGTACACTCGGTCGGCGTCGAGGCGGAAGAGCCGAGTAGCTGAGTCTAAGCTGACAGAGAAGGTCTGCGAAGACGAAATGAAGAATGGTGCAGTGGATATGGCTATTGATACCGGCTGTGGTGGTGATTCCGTGAATGAAGATGAGCCTAAGCAGGAGGAATTGAAGAAGAGTGGTTCCGAACAGCCTTTGGTGAAACTAGAAATCCTCAATTTGATTGAAAAGGGTGATAAGGTGGATTCTGAGGTGAGTGAAGAGCCGCAGAGGCGGTACACTCGATCGGCATTGAAGCTTAAAAGCCAAGAGGCTGAGTCCATCCTCAAGGTCCGCGAAGATGAAATGAAGAATGGTGTAGTGGATATGGCTATTGATGATGAACCCAATACCGGTAGTGTTGGCGATTCTGTGGCTGAAGATGAGCCTAGGCAGGAGGAATTGAAGAAGAGTGAATCTGAACAGCCTTTGGTGAAACTAGAAATCCTCGATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGCGAATGAAAAGCCGCAGAGGAGGTTCACTCGGTCAACATTGAACACAGAGAATGAAGCCCTAGACTTCAATTTGGTTTCCCAGAAAAGCGCACCAGCTGAGGTTGAGACGAAAATGCGGAAGACTGTGAAAAAGTTTAGACTGTTAGAGCTTCTTGAAACTGGTATTCTCGAGGGGCAGCGGGTGACTTACGTTAAAGGATCAAGGGGAAGAAAAACTGGAGAGAAAGGGCTTACAGGAGTGATTTCTGGTTCTGGTATAATGTGTCACTGTAAGCGATGCAATGGAACTGATGCTGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGCACAAATAAACGTCCTCCTGAGTACATATATCTTGAGAACGGGAAGACCCTTCGGGATGTCTTAACTGCATGCAATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTCGCTGTTGGTTGCTCATCTATAAAGACGTGTTCCATCTGCCTCAATTGCAAAGGATCTATTTGCAAAGATTATACTAGATCAGCAATGCTTCTTTGTCGCTCCTGCTTGGACTTGAAAGAGACCCAAGCTAAGTTATCTGTAGCTGCGAAACCTTCTGAAGTTGCAAACGATTGTTCTGAATTACCACCAAAGCTGGTTTCAGTTGCAATCTGTCCTGACACCGTTCCAGAGTGTCCTGACATTGTCCTAGAGTGCCCTAACGCCATTTCAAGGTGTCATGATACTGTTTCTAAGTGTCTCGGTACCATTTCAAATTGCCCTGACTCTTCTCCTAAGTGTCCTGATACTGTGCTGAAGAGTAGGGATACTGGGATGCACAAGTTGGTTTTTGAGGATGATTTCTTACCGGATGGAACTGAAGTAGTTTATGTTTCGGGTGGACAGAGACGGGCTGTCGGCTATATAAAGGGGTCTGGCATCATGTGTAGTTGCTGCAATAATGAGGTCAGTCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCACGTCGCAAACCGTACCACAACATTTTCATATCTAATGGGGTATCTCTTCACGAGTTGGCATTAAAGCTTTCAAAAGAGCGGAGGTTGGCTATCGAGGACAGTGATGACCTTTGCTTCATCTGCAGAAAAGGAGGAAAGGTCATATGCTGTGATAGTTGCCCAAGGGTTTTTCATGCAGGTAAAGAGTATTTGACTGGTCTTGCTGCCATGGCTTTTAAAAGGTGCCTTTCTCTACCAACTGTCCCTAATGGTACTTGGTACTGTAAACATTGCCAGACTATGTTCGATAGAGAGATAGATGCAGAGAGTAATGTCAATGCTGTTGCAGCTGGAAGGGTTGCAGGAGTTGATCCTATAAAACAAATAACCAACCGATGCATTCGTATTGTCACAGCTTGCGATGAAAAGTTCGGTGGATGTGCACTAGGCCATGAGTTCAAAAACGAGGGTTTTGGTCCTGGGACAGTTATTTTATGCGATCAGTGTGAAAGGGAATTTCATGTCGGCTGTTTGAAGGAAAAAGGAATTGTAGATTTGAAGGAAGTTCCAAAAGAGAAGTGGTTCTGTCATCCAGATTGTCTCAAGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGCAACAGAAGCTTCCAGAGTCTCTCCTGAATGTTGTAAGGAAGAAAAACAATGAAAAAGGTCCAGCAAAGGGCGTTCTTGATGTAAAATGGAGGGTGCTTAGTGGGAAAACGTGTACTGATGATGAAAGTTTACAGTTGCTTTCCAAGGCTCTTGCCATCTTTCATGATCAATTTGCTCCTATTGTTGATAAGGAATCAGGCCTCGACTTCATTAGGGAAATGGTTTATGGAGGGGCCATAAAGACTCAAGAATTTGCTGGGATGTACTGTGCAATAGTTACACTCAACGAATCGGTCGTGTCAGCTGCTATGTTTCGTGTCTATGGGACAGATGTGGCAGAGCTTCCTCTAGTGGCAACAAGTGCTGATTGCCAAGGACAGGGTTACTTTCAGACCTTATTTTCATGTATTGAGAGGCTTCTTGCATATCTAAAGGTGAAAATTCTTCTGCTGCCTGCTGCTGATGAGGCAGCATCCATATGGACAAAAAAATTTGGTTTTCGGAATCTAAATCAAAGTGAGATACACGAGTACAGGAAACATTACCCAATACTGATTTTCCATGGGACATCAGTGCTGCAGAAGTCAGTCCCCAAGTGCAGAGTCACTGGTTCACTGGAGAGTAAGGCGAAGGCGAAGGTTGAATCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1116

Amino Acids

123.19

Weight (kDa)

5.66

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	442 - 497	2.5e-13	Tify domain binding domain
TDBD	PF16135	663 - 711	5.2e-17	Tify domain binding domain
IDM1_C	PF23209	957 - 1095	5.1e-51	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2243
Acc65I	GGTACC	1 cut(s)	1832
AccB1I	GGYRCC	2 cut(s)	1832, 2298
AccBSI	CCGCTC	1 cut(s)	2155
AccII	CGCG	2 cut(s)	66, 897
AccIII	TCCGGA	1 cut(s)	499
AclI	AACGTT	1 cut(s)	399
AclWI	GGATC	6 cut(s)	297, 491, 504, 1294, 1591, 2420
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	4 cut(s)	2570, 2948, 3138, 3188
AcuI	CTGAAG	5 cut(s)	80, 999, 1707, 1904, 1968
AcyI	GRCGYC	1 cut(s)	584
AfiI	CCNNNNNNNGG	7 cut(s)	121, 126, 325, 953, 1800, 2765, 3076
AflIII	ACRYGT	2 cut(s)	1556, 2807
AgeI	ACCGGT	1 cut(s)	953
AhdI	GACNNNNNGTC	1 cut(s)	1982
AjiI	CACGTC	2 cut(s)	1557, 2078
AjnI	CCWGG	2 cut(s)	125, 2533
AjuI	GAANNNNNNNTTGG	2 cut(s)	1711, 1743
Alw21I	GWGCWC	1 cut(s)	2500
Alw26I	GTCTC	7 cut(s)	45, 1187, 1643, 1832, 1969, 2660, 2721
Alw44I	GTGCAC	1 cut(s)	2496
AlwI	GGATC	6 cut(s)	297, 491, 504, 1294, 1591, 2420
Ama87I	CYCGRG	3 cut(s)	42, 120, 1256
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	7 cut(s)	50, 112, 123, 132, 2503, 2896, 2931
ApaLI	GTGCAC	1 cut(s)	2496
ApoI	RAATTY	4 cut(s)	2570, 2948, 3138, 3188
AsiGI	ACCGGT	1 cut(s)	953
Asp700I	GAANNNNTTC	2 cut(s)	16, 2636
Asp718I	GGTACC	1 cut(s)	1832
AspA2I	CCTAGG	1 cut(s)	989
AspLEI	GCGC	2 cut(s)	66, 1178
AspS9I	GGNCC	9 cut(s)	46, 112, 117, 123, 133, 892, 2531, 2756, 2931
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 468
AvaI	CYCGRG	3 cut(s)	42, 120, 1256
AvaII	GGWCC	5 cut(s)	46, 117, 892, 2531, 2756
AvrII	CCTAGG	1 cut(s)	989
BaeGI	GKGCMC	2 cut(s)	1787, 2500
BaeI	ACNNNNGTAYC	2 cut(s)	3212, 3245
BamHI	GGATCC	1 cut(s)	496
BanI	GGYRCC	2 cut(s)	1832, 2298
BauI	CACGAG	2 cut(s)	2126, 3224
BbsI	GAAGAC	5 cut(s)	270, 354, 645, 1214, 1469
Bbv12I	GWGCWC	1 cut(s)	2500
BbvCI	CCTCAGC	2 cut(s)	563, 1185
BccI	CCATC	6 cut(s)	370, 442, 890, 1571, 1934, 2861
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	2 cut(s)	127, 2535
BciVI	GTATCC	1 cut(s)	1888
BclI	TGATCA	1 cut(s)	2863
BcnI	CCSGG	4 cut(s)	54, 121, 122, 468
BcoDI	GTCTC	7 cut(s)	45, 1187, 1643, 1832, 1969, 2660, 2721
BfaI	CTAG	9 cut(s)	312, 767, 990, 1040, 1148, 1605, 1778, 2501, 3047
BfmI	CTRYAG	3 cut(s)	1668, 2197, 3275
BfuAI	ACCTGC	1 cut(s)	2243
BfuI	GTATCC	1 cut(s)	1888
BglI	GCCNNNNNGGC	2 cut(s)	131, 832
BlnI	CCTAGG	1 cut(s)	989
BlpI	GCTNAGC	1 cut(s)	429
Bme1390I	CCNGG	6 cut(s)	54, 121, 122, 127, 468, 2535
Bme18I	GGWCC	5 cut(s)	46, 117, 892, 2531, 2756
BmeRI	GACNNNNNGTC	1 cut(s)	1982
BmeT110I	CYCGRG	3 cut(s)	42, 120, 1256
BmgBI	CACGTC	2 cut(s)	1557, 2078
BmgT120I	GGNCC	9 cut(s)	46, 112, 117, 123, 133, 892, 2531, 2756, 2931
BmiI	GGNNCC	8 cut(s)	47, 119, 456, 498, 745, 1834, 2300, 2932
BmrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 468, 2535
BmrI	ACTGGG	1 cut(s)	1908
BmsI	GCATC	8 cut(s)	259, 1355, 1369, 1893, 2016, 2365, 2441, 3179
BmuI	ACTGGG	1 cut(s)	1908
BpiI	GAAGAC	5 cut(s)	270, 354, 645, 1214, 1469
BplI	GAGNNNNNCTC	4 cut(s)	559, 591, 1099, 1131
BpmI	CTGGAG	2 cut(s)	1326, 3335
Bpu10I	CCTNAGC	4 cut(s)	87, 563, 717, 1185
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	4 cut(s)	872, 1472, 2642, 2928
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 468
BsaHI	GRCGYC	1 cut(s)	584
BsaI	GGTCTC	2 cut(s)	45, 1643
BsaWI	WCCGGW	3 cut(s)	499, 953, 1936
BsaXI	ACNNNNNCTCC	2 cut(s)	2199, 2229
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 126, 325, 953, 1800, 2765, 3076
Bse118I	RCCGGY	2 cut(s)	680, 953
Bse1I	ACTGG	6 cut(s)	1252, 1309, 1903, 2275, 3310, 3318
Bse3DI	GCAATG	3 cut(s)	1375, 1620, 2344
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	127, 2535
BseGI	GGATG	9 cut(s)	882, 1480, 1908, 1930, 1945, 2498, 2644, 2964, 3170
BseLI	CCNNNNNNNGG	7 cut(s)	121, 126, 325, 953, 1800, 2765, 3076
BseMI	GCAATG	3 cut(s)	1375, 1620, 2344
BseMII	CTCAG	7 cut(s)	101, 554, 600, 801, 867, 1176, 1428
BseNI	ACTGG	6 cut(s)	1252, 1309, 1903, 2275, 3310, 3318
BseRI	GAGGAG	7 cut(s)	224, 227, 230, 233, 467, 580, 1120
BseSI	GKGCMC	2 cut(s)	1787, 2500
BseX3I	CGGCCG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	2954
BsgI	GTGCAG	2 cut(s)	678, 3316
Bsh1236I	CGCG	2 cut(s)	66, 897
Bsh1285I	CGRYCG	4 cut(s)	53, 581, 848, 2994
BshFI	GGCC	7 cut(s)	52, 114, 125, 134, 2505, 2898, 2933
BshNI	GGYRCC	2 cut(s)	1832, 2298
BshTI	ACCGGT	1 cut(s)	953
BsiEI	CGRYCG	4 cut(s)	53, 581, 848, 2994
BsiHKAI	GWGCWC	1 cut(s)	2500
BsiHKCI	CYCGRG	3 cut(s)	42, 120, 1256
BslFI	GGGAC	6 cut(s)	2025, 2303, 2551, 3037, 3272, 3277
BslI	CCNNNNNNNGG	7 cut(s)	121, 126, 325, 953, 1800, 2765, 3076
BsmAI	GTCTC	7 cut(s)	45, 1187, 1643, 1832, 1969, 2660, 2721
BsmBI	CGTCTC	2 cut(s)	1187, 1969
BsmFI	GGGAC	6 cut(s)	2025, 2303, 2551, 3037, 3272, 3277
BsmI	GAATGC	1 cut(s)	2454
BsnI	GGCC	7 cut(s)	52, 114, 125, 134, 2505, 2898, 2933
Bso31I	GGTCTC	2 cut(s)	45, 1643
BsoBI	CYCGRG	3 cut(s)	42, 120, 1256
Bsp1286I	GDGCHC	2 cut(s)	1787, 2500
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
Bsp1720I	GCTNAGC	1 cut(s)	429
Bsp19I	CCATGG	2 cut(s)	2283, 3259
BspANI	GGCC	7 cut(s)	52, 114, 125, 134, 2505, 2898, 2933
BspCNI	CTCAG	7 cut(s)	100, 555, 601, 802, 868, 1177, 1429
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	2 cut(s)	66, 897
BspHI	TCATGA	2 cut(s)	1807, 2860
BspLI	GGNNCC	8 cut(s)	47, 119, 456, 498, 745, 1834, 2300, 2932
BspMAI	CTGCAG	2 cut(s)	2201, 3279
BspMI	ACCTGC	1 cut(s)	2243
BspPI	GGATC	6 cut(s)	297, 491, 504, 1294, 1591, 2420
BspQI	GCTCTTC	3 cut(s)	269, 590, 816
BspT107I	GGYRCC	2 cut(s)	1832, 2298
BspTNI	GGTCTC	2 cut(s)	45, 1643
BsrBI	CCGCTC	1 cut(s)	2155
BsrDI	GCAATG	3 cut(s)	1375, 1620, 2344
BsrFI	RCCGGY	2 cut(s)	680, 953
BsrI	ACTGG	6 cut(s)	1252, 1309, 1903, 2275, 3310, 3318
BssAI	RCCGGY	2 cut(s)	680, 953
BssMI	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
BssNI	GRCGYC	1 cut(s)	584
BssSI	CACGAG	2 cut(s)	2126, 3224
BssT1I	CCWWGG	7 cut(s)	989, 1509, 2237, 2283, 2841, 3070, 3259
Bst2BI	CACGAG	2 cut(s)	2126, 3224
Bst2UI	CCWGG	2 cut(s)	127, 2535
Bst6I	CTCTTC	8 cut(s)	269, 590, 731, 816, 1004, 1861, 1880, 2127
BstACI	GRCGYC	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	3059
BstC8I	GCNNGC	7 cut(s)	194, 1410, 1489, 1530, 2065, 2473, 3153
BstDSI	CCRYGG	2 cut(s)	2283, 3259
BstF5I	GGATG	9 cut(s)	882, 1480, 1908, 1930, 1945, 2498, 2644, 2964, 3170
BstFNI	CGCG	2 cut(s)	66, 897
BstHHI	GCGC	2 cut(s)	66, 1178
BstKTI	GATC	9 cut(s)	292, 499, 848, 1289, 1586, 1610, 2428, 2557, 2866
BstMAI	GTCTC	7 cut(s)	45, 1187, 1643, 1832, 1969, 2660, 2721
BstMBI	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
BstMCI	CGRYCG	4 cut(s)	53, 581, 848, 2994
BstNI	CCWGG	2 cut(s)	127, 2535
BstNSI	RCATGY	2 cut(s)	1412, 1491
BstSCI	CCNGG	6 cut(s)	52, 119, 120, 125, 466, 2533
BstSFI	CTRYAG	3 cut(s)	1668, 2197, 3275
BstSLI	GKGCMC	2 cut(s)	1787, 2500
BstUI	CGCG	2 cut(s)	66, 897
BstV2I	GAAGAC	5 cut(s)	270, 354, 645, 1214, 1469
BstX2I	RGATCY	3 cut(s)	289, 496, 1583
BstYI	RGATCY	3 cut(s)	289, 496, 1583
BstZI	CGGCCG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1888
BsuRI	GGCC	7 cut(s)	52, 114, 125, 134, 2505, 2898, 2933
BtgI	CCRYGG	2 cut(s)	2283, 3259
BtgZI	GCGATG	3 cut(s)	294, 1378, 2490
BtrI	CACGTC	2 cut(s)	1557, 2078
BtsCI	GGATG	9 cut(s)	882, 1480, 1908, 1930, 1945, 2498, 2644, 2964, 3170
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	7 cut(s)	666, 1354, 2182, 2564, 3276, 3303, 3311
BveI	ACCTGC	1 cut(s)	2243
Cac8I	GCNNGC	7 cut(s)	194, 1410, 1489, 1530, 2065, 2473, 3153
CciI	TCATGA	2 cut(s)	1807, 2860
CfoI	GCGC	2 cut(s)	66, 1178
Cfr10I	RCCGGY	2 cut(s)	680, 953
Cfr13I	GGNCC	9 cut(s)	46, 112, 117, 123, 133, 892, 2531, 2756, 2931
Cfr9I	CCCGGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	573
CspAI	ACCGGT	1 cut(s)	953
DpnI	GATC	9 cut(s)	291, 498, 847, 1288, 1585, 1609, 2427, 2556, 2865
DpnII	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
DraI	TTTAAA	1 cut(s)	2293
DriI	GACNNNNNGTC	1 cut(s)	1982
EaeI	YGGCCR	1 cut(s)	50
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	8 cut(s)	269, 590, 731, 816, 1004, 1861, 1880, 2127
Eam1105I	GACNNNNNGTC	1 cut(s)	1982
EarI	CTCTTC	8 cut(s)	269, 590, 731, 816, 1004, 1861, 1880, 2127
EciI	GGCGGA	3 cut(s)	107, 341, 607
EclXI	CGGCCG	1 cut(s)	50
Eco130I	CCWWGG	7 cut(s)	989, 1509, 2237, 2283, 2841, 3070, 3259
Eco147I	AGGCCT	1 cut(s)	2898
Eco31I	GGTCTC	2 cut(s)	45, 1643
Eco47I	GGWCC	5 cut(s)	46, 117, 892, 2531, 2756
Eco52I	CGGCCG	1 cut(s)	50
Eco57I	CTGAAG	5 cut(s)	80, 999, 1707, 1904, 1968
Eco88I	CYCGRG	3 cut(s)	42, 120, 1256
EcoRII	CCWGG	2 cut(s)	125, 2533
EcoT14I	CCWWGG	7 cut(s)	989, 1509, 2237, 2283, 2841, 3070, 3259
EcoT22I	ATGCAT	1 cut(s)	2456
ErhI	CCWWGG	7 cut(s)	989, 1509, 2237, 2283, 2841, 3070, 3259
Esp3I	CGTCTC	2 cut(s)	1187, 1969
FaqI	GGGAC	6 cut(s)	2025, 2303, 2551, 3037, 3272, 3277
FauI	CCCGC	1 cut(s)	1260
FauNDI	CATATG	2 cut(s)	2219, 3176
FbaI	TGATCA	1 cut(s)	2863
FokI	GGATG	9 cut(s)	869, 1487, 1915, 1937, 1952, 2505, 2631, 2971, 3157
FspBI	CTAG	9 cut(s)	312, 767, 990, 1040, 1148, 1605, 1778, 2501, 3047
GlaI	GCGC	2 cut(s)	65, 1177
GsaI	CCCAGC	1 cut(s)	2958
GsuI	CTGGAG	2 cut(s)	1326, 3335
HaeIII	GGCC	7 cut(s)	52, 114, 125, 134, 2505, 2898, 2933
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	2 cut(s)	66, 1178
Hin1I	GRCGYC	1 cut(s)	584
Hin6I	GCGC	2 cut(s)	64, 1176
HinP1I	GCGC	2 cut(s)	64, 1176
HincII	GTYRAC	1 cut(s)	1122
HindII	GTYRAC	1 cut(s)	1122
HindIII	AAGCTT	3 cut(s)	857, 2141, 2705
Hpy188I	TCNGA	8 cut(s)	22, 748, 811, 1021, 1687, 1708, 3090, 3201
Hpy99I	CGWCG	5 cut(s)	26, 305, 308, 589, 2082
HpyCH4IV	ACGT	6 cut(s)	399, 1278, 1429, 1556, 2077, 2807
HpySE526I	ACGT	6 cut(s)	399, 1278, 1429, 1556, 2077, 2807
Hsp92I	GRCGYC	1 cut(s)	584
HspAI	GCGC	2 cut(s)	64, 1176
Kpn2I	TCCGGA	1 cut(s)	499
KpnI	GGTACC	1 cut(s)	1836
Ksp22I	TGATCA	1 cut(s)	2863
Kzo9I	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
LguI	GCTCTTC	3 cut(s)	269, 590, 816
LmnI	GCTCC	4 cut(s)	436, 454, 1634, 2878
LweI	GCATC	8 cut(s)	259, 1355, 1369, 1893, 2016, 2365, 2441, 3179
MaeI	CTAG	9 cut(s)	312, 767, 990, 1040, 1148, 1605, 1778, 2501, 3047
MaeII	ACGT	6 cut(s)	399, 1278, 1429, 1556, 2077, 2807
MaeIII	GTNAC	7 cut(s)	340, 1270, 1352, 2464, 2974, 3080, 3301
MalI	GATC	9 cut(s)	291, 498, 847, 1288, 1585, 1609, 2427, 2556, 2865
MbiI	CCGCTC	1 cut(s)	2155
MboI	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
MfeI	CAATTG	1 cut(s)	1573
MflI	RGATCY	3 cut(s)	289, 496, 1583
MhlI	GDGCHC	2 cut(s)	1787, 2500
MlyI	GAGTC	7 cut(s)	338, 620, 887, 1847, 2723, 2935, 3309
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	2456
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	2 cut(s)	16, 2636
MseI	TTAA	5 cut(s)	861, 1281, 1481, 2138, 2292
MslI	CAYNNNNRTG	1 cut(s)	3175
MspA1I	CMGCKG	5 cut(s)	562, 1184, 1267, 2405, 3002
MspR9I	CCNGG	6 cut(s)	54, 121, 122, 127, 468, 2535
MunI	CAATTG	1 cut(s)	1573
Mva1269I	GAATGC	1 cut(s)	2454
MvaI	CCWGG	2 cut(s)	127, 2535
MvnI	CGCG	2 cut(s)	66, 897
NciI	CCSGG	4 cut(s)	54, 121, 122, 468
NcoI	CCATGG	2 cut(s)	2283, 3259
NdeI	CATATG	2 cut(s)	2219, 3176
NdeII	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
NlaIV	GGNNCC	8 cut(s)	47, 119, 456, 498, 745, 1834, 2300, 2932
NmeAIII	GCCGAG	1 cut(s)	626
NmuCI	GTSAC	5 cut(s)	340, 1270, 1352, 2464, 3301
NsiI	ATGCAT	1 cut(s)	2456
NspI	RCATGY	2 cut(s)	1412, 1491
PaeI	GCATGC	2 cut(s)	1412, 1491
PaeR7I	CTCGAG	1 cut(s)	1256
PagI	TCATGA	2 cut(s)	1807, 2860
PceI	AGGCCT	1 cut(s)	2898
PciSI	GCTCTTC	3 cut(s)	269, 590, 816
PcsI	WCGNNNNNNNCGW	1 cut(s)	2991
PctI	GAATGC	1 cut(s)	2454
PdmI	GAANNNNTTC	2 cut(s)	16, 2636
PfeI	GAWTC	9 cut(s)	17, 695, 806, 968, 1016, 2891, 2987, 3202, 3341
PflFI	GACNNNGTC	1 cut(s)	1772
PinAI	ACCGGT	1 cut(s)	953
Ple19I	CGATCG	1 cut(s)	848
PleI	GAGTC	7 cut(s)	337, 619, 886, 1847, 2722, 2935, 3308
PpsI	GAGTC	7 cut(s)	337, 619, 886, 1847, 2722, 2935, 3308
Psp1406I	AACGTT	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	125, 2533
PspFI	CCCAGC	1 cut(s)	2954
PspGI	CCWGG	2 cut(s)	125, 2533
PspN4I	GGNNCC	8 cut(s)	47, 119, 456, 498, 745, 1834, 2300, 2932
PspPI	GGNCC	9 cut(s)	46, 112, 117, 123, 133, 892, 2531, 2756, 2931
PstI	CTGCAG	2 cut(s)	2201, 3279
PsuI	RGATCY	3 cut(s)	289, 496, 1583
PsyI	GACNNNGTC	1 cut(s)	1772
PvuI	CGATCG	1 cut(s)	848
PvuII	CAGCTG	3 cut(s)	1184, 2405, 3002
RseI	CAYNNNNRTG	1 cut(s)	3175
SapI	GCTCTTC	3 cut(s)	269, 590, 816
SaqAI	TTAA	5 cut(s)	861, 1281, 1481, 2138, 2292
Sau3AI	GATC	9 cut(s)	289, 496, 845, 1286, 1583, 1607, 2425, 2554, 2863
Sau96I	GGNCC	9 cut(s)	46, 112, 117, 123, 133, 892, 2531, 2756, 2931
SchI	GAGTC	7 cut(s)	338, 620, 887, 1847, 2723, 2935, 3309
ScrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 468, 2535
SduI	GDGCHC	2 cut(s)	1787, 2500
SfaNI	GCATC	8 cut(s)	259, 1355, 1369, 1893, 2016, 2365, 2441, 3179
SfcI	CTRYAG	3 cut(s)	1668, 2197, 3275
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	1256
SinI	GGWCC	5 cut(s)	46, 117, 892, 2531, 2756
SlaI	CTCGAG	1 cut(s)	1256
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	3175
SmlI	CTYRAG	5 cut(s)	887, 1256, 1451, 2657, 2943
SmoI	CTYRAG	5 cut(s)	887, 1256, 1451, 2657, 2943
SphI	GCATGC	2 cut(s)	1412, 1491
SseBI	AGGCCT	1 cut(s)	2898
SspMI	CTAG	9 cut(s)	312, 767, 990, 1040, 1148, 1605, 1778, 2501, 3047
StuI	AGGCCT	1 cut(s)	2898
StyD4I	CCNGG	6 cut(s)	52, 119, 120, 125, 466, 2533
StyI	CCWWGG	7 cut(s)	989, 1509, 2237, 2283, 2841, 3070, 3259
TaiI	ACGT	6 cut(s)	402, 1281, 1432, 1559, 2080, 2810
TaqII	GACCGA	3 cut(s)	567, 1107, 2980
TatI	WGTACW	4 cut(s)	1440, 2810, 2961, 3228
TauI	GCSGC	4 cut(s)	199, 562, 829, 1102
TfiI	GAWTC	9 cut(s)	17, 695, 806, 968, 1016, 2891, 2987, 3202, 3341
Tru1I	TTAA	5 cut(s)	861, 1281, 1481, 2138, 2292
Tru9I	TTAA	5 cut(s)	861, 1281, 1481, 2138, 2292
TscAI	CASTG	7 cut(s)	666, 1361, 2182, 2564, 3276, 3310, 3318
TseFI	GTSAC	5 cut(s)	340, 1270, 1352, 2464, 3301
Tsp45I	GTSAC	5 cut(s)	340, 1270, 1352, 2464, 3301
TspGWI	ACGGA	3 cut(s)	24, 29, 688
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	7 cut(s)	666, 1361, 2182, 2564, 3276, 3310, 3318
Tth111I	GACNNNGTC	1 cut(s)	1772
VneI	GTGCAC	1 cut(s)	2496
VpaK11BI	GGWCC	5 cut(s)	46, 117, 892, 2531, 2756
XapI	RAATTY	4 cut(s)	2570, 2948, 3138, 3188
XceI	RCATGY	2 cut(s)	1412, 1491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2631
XhoI	CTCGAG	1 cut(s)	1256
XmaI	CCCGGG	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	989
XmnI	GAANNNNTTC	2 cut(s)	16, 2636
XspI	CTAG	9 cut(s)	312, 767, 990, 1040, 1148, 1605, 1778, 2501, 3047
Zsp2I	ATGCAT	1 cut(s)	2456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.