Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Forward (+)

62780155 .. 62788269

Gene Structure 8115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG370700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2973 bp

ATGGCGAACGGAACGGATTCCGACGAGTTCGTGGTGCGGTCTCGGGTCCGGCCGGGGCTGAAACGCGAATTGACCTTCGCATTGGCTCAGGCGGAGGTCTCCTGTTCGTTGGGCCGGACCCGGGCCAGGAAGGCCCAGAATGAGCTGCCGGTGAATGTGAACCGTAAGAGATTGAAGAAGGAGGCGAAAAGCGAGCCGCAGAAGGACGACGAGGAGGAGAAACCGGCGAGTGGTGGCGAGAATGTGAAGGTTGTTGAGGATTTGGTGGAGGCTATAAGCGAAGAAGATGCGAAGAGCGATGTGGTGGATCTAATGAGCGACGACGAGCCTAGAAGCCATGTGGCGGAGTCCAAGGTCGTCACCGAAGACGAATTGAAGAACGGTGTTGTAGAGATGGCTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAATGAAGATGAGGCTAAGCAGGAGCAATTGAAGATGGAGGAGCCGGAAAAGCCCGATTCGATTGGTAAGGGTGAAAAGGTGGAACCGGAAAAGCCCAATTCGATTGAAAATGGTGAAAAGGTGGAAGGAGAAGTGATTGAAAAGCCGCTGAGGAGGTACACTCGGTCGGCATCGAGGCGGAAGAGCCAAGTAGCTGAGCCTAAGCTGACAGAGAAGGTCTGCGAAGACGAAATGAAGAATGGTGCAGTGGATATGACCGGCTGCGGTGGCGATTCCGTGAATGAAGATGAACCTAAGCAGGAGGAACAGCCTTTGGTGAAACTAGAAATCCTCAATTTGATTGAAAAGGGTGATACGGTTGAATGTGAGGTGAGTGAAACGCCGCAGAGGCGGTACACTCGGTCAGCATTGAAGCTTAAAAGCCAAGTGGCTGAGTCTATCTTGAAGGTCAGTGAAGATGAAATGAAGAATGGTGTAGTGGATATGGCTATTGATGATGAACCCAATACCGGTAGTGTTGGTGATTCTGTGGCTGAAGATGAGCCTAGGCAGGAGGAATTGAAGAAGAGTGAATCTGAACAGCCTTTGGTGAAACTAGAAATCCTCGATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGCGAATGAAAAGCCGAGGAGGTTCACTCGGTCAACATTGAACACAGAGAATGAAGCCCTAGACTTCAATTCGGTTTCCCAGAAAAGCACACCAGCTGAGGTTGAGACGAAAATGCGGAAGACTGTGAAAAAGTTTAGACTGTTAGAGCTTCTTGAAACTGGTATTCTTGAGGGGCAGCGGGTGACTTACCTTAAAGGATCAAAGGGAAGAAAAACTGCAGAGAAAGGGCTTACAGGAGTGATTACTGGTTCTGGTATAATGTGTCACTGTGAGCGATGCAATGGAACTGATGGTGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGCGCAAATAAACGTCCTCCTGAGTACATATATCTTGAGAACAGGAAGACCCTTCGGGATGTCCTAACTGCATGCAATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTCGCTGTTGGTTGCTCATCTATAAAGACGTGTACCATCTGCCTCAATTGCAAAGGATCTATTTGCAAAGATGATACTAGATCAGCAATGCTTCTTTGTCGCTCCTGCTTGGACTTGAAAGAGACCCAAGCTAAGTTATCTGTAGCTGCGAAACCTTCTGAAGTTGCAAATGATTGTTCTGAATTACCAAAGCCGGTTTCAGTTGCAAACTGTCCTGACACCGTTCCAGAGTGTCCTGACATTGTCCTAGAGTGCCCTAACGCCATTTCAAGGTGTCATGATACTGTTTCAAAGTGTCTCGGTACCATTTCAAATTGCCCTGATTCTTCTCCTAAGTGTCCTGATACTGTGCTGAAGAGTAGGTCGTCAGCAAGTAAGAGTCGAGGAAGAGTAACCAGAAAGGATACCGGGATGCACAAGTTGGTTTTTGAGGATAATTTCTTACCGGATGGAACTGAAGTAGTTTATGTTTCGGGTGGACAGAGACGGGCTGTCGGCTATAAAAAGGGGTCTGGCATCATGTGTAGTTGCTGCAATACAGAGGTCAGTCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCACGTCGCAAACCCTACCACAACATTTTCATATCTAATGGGGTATCTCTTCACGAGTTGGCATTAAAGCTTTCAAAAAAGCGGAGGTTGTCTACCGAGGACAGTGATGACCTTTGCTTCATCTGCAGAAAAGGAGGAAAGGTCATATGCTGTGATAGTTGCCCAAGGGTTTTTCATGCAGGGTGCCTTTCTCTACCAACTGTCCCTAATGGTACTTGGTACTGTAAACATTGCCAGACTATGTTCGATAGAAACATAGATGCAGAGCGTAATGTCAATGCTGTTGCAGCTGGAAGGGTTGCAGGAGTTGATCCTATAAAACAAATAACCAACCGATGCATTCGAATTGTCACAGCTTGCGATGAAAAGTTCGGTGGATGTGCACTGTGCAGAGGCCATGAGTTCAAAAACGAGGGTTTTGGTCCTGGGACAGTTATTTTATGCGATCAGTGTGAAAGGGAATTTCATGTCGGCTGTTTGAAGGAAAAAGGAATTGTAGATTTGAAGGAAGTTCCAAAAGAGAAGTGGTTCTGTCATCCAGATTGTCTCAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGCAACAGAAGCTTCCAGAGTCCCTCCTGAATGTTGTAAGGAAGAAAAAGAATGAAAAAGGTCCAGCAAAAGGGGGTCTTGATATAAAATGGAGGGTGCTTAGTGGGAAAACGTCTAATGATGATGAAAGTTTACAGTTGCTTTCCAAGGCTCTTGCCATATTTCATGATCAATTTGCTCCTATTGTTGATAAGGAATCAGGCCTCGACTTCATTAGGGAAATGCTTTATGGAGGGGCCATAAAGACTCAAGAATTTGCTGGGATGTACTGTGCAATAGTTACACTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

990

Amino Acids

109.17

Weight (kDa)

5.8

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	437 - 492	5.3e-10	Tify domain binding domain
TDBD	PF16135	673 - 718	6.8e-16	Tify domain binding domain
PHD-1st_NSD	PF23011	734 - 777	4.6e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	737 - 776	9.2e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1814
AccB1I	GGYRCC	2 cut(s)	1814, 2277
AccI	GTMKAC	1 cut(s)	2186
AccII	CGCG	1 cut(s)	66
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	4 cut(s)	315, 1279, 1576, 2399
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	2555, 2933
AcuI	CTGAAG	4 cut(s)	987, 1692, 1886, 1989
AfaI	GTAC	8 cut(s)	590, 827, 1427, 1546, 1816, 2308, 2315, 2948
AfiI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1782, 2750
AflIII	ACRYGT	1 cut(s)	1541
AgeI	ACCGGT	1 cut(s)	941
AhdI	GACNNNNNGTC	1 cut(s)	2003
AjiI	CACGTC	2 cut(s)	1542, 2099
AjnI	CCWGG	2 cut(s)	125, 2518
AjuI	GAANNNNNNNTTGG	2 cut(s)	1693, 1725
AleI	CACNNNNGTG	1 cut(s)	2968
Alw21I	GWGCWC	1 cut(s)	2479
Alw26I	GTCTC	7 cut(s)	45, 103, 1172, 1628, 1814, 1990, 2645
Alw44I	GTGCAC	1 cut(s)	2475
AlwI	GGATC	4 cut(s)	315, 1279, 1576, 2399
Ama87I	CYCGRG	2 cut(s)	42, 120
AoxI	GGCC	7 cut(s)	50, 112, 123, 132, 2488, 2881, 2916
ApaLI	GTGCAC	1 cut(s)	2475
ApeKI	GCWGC	6 cut(s)	145, 693, 1249, 1658, 2043, 2381
ApoI	RAATTY	2 cut(s)	2555, 2933
AsiGI	ACCGGT	1 cut(s)	941
Asp700I	GAANNNNTTC	2 cut(s)	16, 2621
Asp718I	GGTACC	1 cut(s)	1814
AspA2I	CCTAGG	1 cut(s)	977
AspLEI	GCGC	1 cut(s)	1406
AspS9I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2516, 2741, 2916
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 1921
AsuII	TTCGAA	1 cut(s)	2437
AvaI	CYCGRG	2 cut(s)	42, 120
AvaII	GGWCC	4 cut(s)	46, 117, 2516, 2741
AvrII	CCTAGG	1 cut(s)	977
BaeGI	GKGCMC	2 cut(s)	1769, 2479
BanI	GGYRCC	2 cut(s)	1814, 2277
BauI	CACGAG	1 cut(s)	2147
BbsI	GAAGAC	4 cut(s)	372, 663, 1199, 1454
Bbv12I	GWGCWC	1 cut(s)	2479
BbvCI	CCTCAGC	2 cut(s)	581, 1170
BbvI	GCAGC	6 cut(s)	132, 680, 1261, 1645, 2030, 2393
BccI	CCATC	5 cut(s)	388, 460, 1358, 1556, 1955
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	127, 2520
BciVI	GTATCC	1 cut(s)	1909
BclI	TGATCA	1 cut(s)	2848
BcnI	CCSGG	4 cut(s)	54, 121, 122, 1921
BcoDI	GTCTC	7 cut(s)	45, 103, 1172, 1628, 1814, 1990, 2645
BfaI	CTAG	7 cut(s)	330, 755, 978, 1028, 1133, 1590, 1760
BfmI	CTRYAG	3 cut(s)	1290, 1653, 2218
BfuI	GTATCC	1 cut(s)	1909
BglI	GCCNNNNNGGC	2 cut(s)	131, 820
BisI	GCNGC	9 cut(s)	146, 197, 578, 694, 815, 1250, 1659, 2044, 2382
BlnI	CCTAGG	1 cut(s)	977
BlpI	GCTNAGC	2 cut(s)	447, 627
BlsI	GCNGC	9 cut(s)	147, 198, 579, 695, 816, 1251, 1660, 2045, 2383
Bme1390I	CCNGG	6 cut(s)	54, 121, 122, 127, 1921, 2520
Bme18I	GGWCC	4 cut(s)	46, 117, 2516, 2741
BmeRI	GACNNNNNGTC	1 cut(s)	2003
BmeT110I	CYCGRG	2 cut(s)	42, 120
BmgBI	CACGTC	2 cut(s)	1542, 2099
BmgT120I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2516, 2741, 2916
BmiI	GGNNCC	7 cut(s)	47, 119, 474, 516, 1816, 2279, 2917
BmrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 1921, 2520
BmsI	GCATC	7 cut(s)	277, 611, 1340, 1914, 2037, 2344, 2420
BpiI	GAAGAC	4 cut(s)	372, 663, 1199, 1454
BplI	GAGNNNNNCTC	4 cut(s)	577, 609, 1084, 1116
Bpu10I	CCTNAGC	5 cut(s)	87, 581, 633, 726, 1170
Bpu1102I	GCTNAGC	2 cut(s)	447, 627
Bpu14I	TTCGAA	1 cut(s)	2437
BpuEI	CTTGAG	4 cut(s)	1262, 1457, 2913, 2951
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 1921
BsaI	GGTCTC	3 cut(s)	45, 103, 1628
BsaWI	WCCGGW	3 cut(s)	517, 941, 1957
BsaXI	ACNNNNNCTCC	2 cut(s)	2220, 2250
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1782, 2750
Bse118I	RCCGGY	5 cut(s)	148, 223, 689, 941, 1705
Bse1I	ACTGG	2 cut(s)	1237, 1324
Bse3DI	GCAATG	3 cut(s)	1360, 1605, 2323
BseBI	CCWGG	2 cut(s)	127, 2520
BseGI	GGATG	6 cut(s)	1465, 1929, 1966, 2477, 2629, 2949
BseLI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1782, 2750
BseMI	GCAATG	3 cut(s)	1360, 1605, 2323
BseMII	CTCAG	7 cut(s)	101, 572, 618, 855, 1161, 1413, 2656
BseNI	ACTGG	2 cut(s)	1237, 1324
BseRI	GAGGAG	5 cut(s)	227, 230, 485, 598, 1105
BseSI	GKGCMC	2 cut(s)	1769, 2479
BseX3I	CGGCCG	1 cut(s)	50
BseXI	GCAGC	6 cut(s)	132, 680, 1261, 1645, 2030, 2393
BseYI	CCCAGC	1 cut(s)	2939
BsgI	GTGCAG	2 cut(s)	696, 2503
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	2 cut(s)	53, 599
BshFI	GGCC	7 cut(s)	52, 114, 125, 134, 2490, 2883, 2918
BshNI	GGYRCC	2 cut(s)	1814, 2277
BshTI	ACCGGT	1 cut(s)	941
BsiEI	CGRYCG	2 cut(s)	53, 599
BsiHKAI	GWGCWC	1 cut(s)	2479
BsiHKCI	CYCGRG	2 cut(s)	42, 120
BslFI	GGGAC	4 cut(s)	2046, 2282, 2536, 2686
BslI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 941, 1782, 2750
BsmAI	GTCTC	7 cut(s)	45, 103, 1172, 1628, 1814, 1990, 2645
BsmBI	CGTCTC	2 cut(s)	1172, 1990
BsmFI	GGGAC	4 cut(s)	2046, 2282, 2536, 2686
BsmI	GAATGC	1 cut(s)	2433
BsnI	GGCC	7 cut(s)	52, 114, 125, 134, 2490, 2883, 2918
Bso31I	GGTCTC	3 cut(s)	45, 103, 1628
BsoBI	CYCGRG	2 cut(s)	42, 120
Bsp119I	TTCGAA	1 cut(s)	2437
Bsp1286I	GDGCHC	2 cut(s)	1769, 2479
Bsp143I	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
Bsp1720I	GCTNAGC	2 cut(s)	447, 627
BspANI	GGCC	7 cut(s)	52, 114, 125, 134, 2490, 2883, 2918
BspCNI	CTCAG	7 cut(s)	100, 573, 619, 856, 1162, 1414, 2655
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	1789, 2845
BspLI	GGNNCC	7 cut(s)	47, 119, 474, 516, 1816, 2279, 2917
BspMAI	CTGCAG	2 cut(s)	1294, 2222
BspPI	GGATC	4 cut(s)	315, 1279, 1576, 2399
BspQI	GCTCTTC	2 cut(s)	287, 608
BspT104I	TTCGAA	1 cut(s)	2437
BspT107I	GGYRCC	2 cut(s)	1814, 2277
BspTNI	GGTCTC	3 cut(s)	45, 103, 1628
BsrDI	GCAATG	3 cut(s)	1360, 1605, 2323
BsrFI	RCCGGY	5 cut(s)	148, 223, 689, 941, 1705
BsrI	ACTGG	2 cut(s)	1237, 1324
BssAI	RCCGGY	5 cut(s)	148, 223, 689, 941, 1705
BssMI	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
BssSI	CACGAG	1 cut(s)	2147
BssT1I	CCWWGG	5 cut(s)	351, 977, 1494, 2258, 2826
Bst2BI	CACGAG	1 cut(s)	2147
Bst2UI	CCWGG	2 cut(s)	127, 2520
Bst6I	CTCTTC	6 cut(s)	287, 608, 992, 1862, 1894, 2148
BstBI	TTCGAA	1 cut(s)	2437
BstC8I	GCNNGC	6 cut(s)	194, 1395, 1474, 1515, 2086, 2452
BstF5I	GGATG	6 cut(s)	1465, 1929, 1966, 2477, 2629, 2949
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	1406
BstKTI	GATC	7 cut(s)	310, 1274, 1571, 1595, 2407, 2542, 2851
BstMAI	GTCTC	7 cut(s)	45, 103, 1172, 1628, 1814, 1990, 2645
BstMBI	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
BstMCI	CGRYCG	2 cut(s)	53, 599
BstMWI	GCNNNNNNNGC	9 cut(s)	131, 481, 699, 820, 1403, 1560, 2217, 2381, 2689
BstNI	CCWGG	2 cut(s)	127, 2520
BstNSI	RCATGY	2 cut(s)	1397, 1476
BstSCI	CCNGG	6 cut(s)	52, 119, 120, 125, 1919, 2518
BstSFI	CTRYAG	3 cut(s)	1290, 1653, 2218
BstSLI	GKGCMC	2 cut(s)	1769, 2479
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	6 cut(s)	132, 680, 1261, 1645, 2030, 2393
BstV2I	GAAGAC	4 cut(s)	372, 663, 1199, 1454
BstX2I	RGATCY	2 cut(s)	307, 1568
BstYI	RGATCY	2 cut(s)	307, 1568
BstZI	CGGCCG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1909
BsuRI	GGCC	7 cut(s)	52, 114, 125, 134, 2490, 2883, 2918
BtgZI	GCGATG	3 cut(s)	312, 1363, 2469
BtrI	CACGTC	2 cut(s)	1542, 2099
BtsCI	GGATG	6 cut(s)	1465, 1929, 1966, 2477, 2629, 2949
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	6 cut(s)	684, 889, 1339, 2203, 2477, 2549
Cac8I	GCNNGC	6 cut(s)	194, 1395, 1474, 1515, 2086, 2452
CciI	TCATGA	2 cut(s)	1789, 2845
CfoI	GCGC	1 cut(s)	1406
Cfr10I	RCCGGY	5 cut(s)	148, 223, 689, 941, 1705
Cfr13I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2516, 2741, 2916
Cfr9I	CCCGGG	1 cut(s)	120
Csp6I	GTAC	8 cut(s)	589, 826, 1426, 1545, 1815, 2307, 2314, 2947
CspAI	ACCGGT	1 cut(s)	941
CviQI	GTAC	8 cut(s)	589, 826, 1426, 1545, 1815, 2307, 2314, 2947
DpnI	GATC	7 cut(s)	309, 1273, 1570, 1594, 2406, 2541, 2850
DpnII	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
DriI	GACNNNNNGTC	1 cut(s)	2003
EaeI	YGGCCR	1 cut(s)	50
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	6 cut(s)	287, 608, 992, 1862, 1894, 2148
Eam1105I	GACNNNNNGTC	1 cut(s)	2003
EarI	CTCTTC	6 cut(s)	287, 608, 992, 1862, 1894, 2148
EciI	GGCGGA	3 cut(s)	107, 359, 625
EclXI	CGGCCG	1 cut(s)	50
Eco130I	CCWWGG	5 cut(s)	351, 977, 1494, 2258, 2826
Eco147I	AGGCCT	1 cut(s)	2883
Eco31I	GGTCTC	3 cut(s)	45, 103, 1628
Eco47I	GGWCC	4 cut(s)	46, 117, 2516, 2741
Eco52I	CGGCCG	1 cut(s)	50
Eco57I	CTGAAG	4 cut(s)	987, 1692, 1886, 1989
Eco88I	CYCGRG	2 cut(s)	42, 120
EcoRII	CCWGG	2 cut(s)	125, 2518
EcoT14I	CCWWGG	5 cut(s)	351, 977, 1494, 2258, 2826
EcoT22I	ATGCAT	1 cut(s)	2435
ErhI	CCWWGG	5 cut(s)	351, 977, 1494, 2258, 2826
Esp3I	CGTCTC	2 cut(s)	1172, 1990
FalI	AAGNNNNNCTT	2 cut(s)	2742, 2774
FaqI	GGGAC	4 cut(s)	2046, 2282, 2536, 2686
FauI	CCCGC	1 cut(s)	1245
FauNDI	CATATG	1 cut(s)	2240
FbaI	TGATCA	1 cut(s)	2848
FblI	GTMKAC	1 cut(s)	2186
Fnu4HI	GCNGC	9 cut(s)	146, 197, 578, 694, 815, 1250, 1659, 2044, 2382
FokI	GGATG	6 cut(s)	1472, 1936, 1973, 2484, 2616, 2956
Fsp4HI	GCNGC	9 cut(s)	146, 197, 578, 694, 815, 1250, 1659, 2044, 2382
FspBI	CTAG	7 cut(s)	330, 755, 978, 1028, 1133, 1590, 1760
GlaI	GCGC	1 cut(s)	1405
GluI	GCNGC	9 cut(s)	146, 197, 578, 694, 815, 1250, 1659, 2044, 2382
GsaI	CCCAGC	1 cut(s)	2943
HaeIII	GGCC	7 cut(s)	52, 114, 125, 134, 2490, 2883, 2918
HhaI	GCGC	1 cut(s)	1406
Hin6I	GCGC	1 cut(s)	1404
HinP1I	GCGC	1 cut(s)	1404
HincII	GTYRAC	1 cut(s)	1107
HindII	GTYRAC	1 cut(s)	1107
HindIII	AAGCTT	3 cut(s)	845, 2162, 2690
Hpy188I	TCNGA	4 cut(s)	22, 1009, 1672, 1693
Hpy99I	CGWCG	5 cut(s)	26, 212, 323, 326, 2103
HpyCH4IV	ACGT	5 cut(s)	417, 1414, 1541, 2098, 2792
HpyF10VI	GCNNNNNNNGC	9 cut(s)	131, 481, 699, 820, 1403, 1560, 2217, 2381, 2689
HpySE526I	ACGT	5 cut(s)	417, 1414, 1541, 2098, 2792
HspAI	GCGC	1 cut(s)	1404
KpnI	GGTACC	1 cut(s)	1818
Ksp22I	TGATCA	1 cut(s)	2848
Kzo9I	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
LguI	GCTCTTC	2 cut(s)	287, 608
LmnI	GCTCC	4 cut(s)	454, 472, 1619, 2863
Lsp1109I	GCAGC	6 cut(s)	132, 680, 1261, 1645, 2030, 2393
LweI	GCATC	7 cut(s)	277, 611, 1340, 1914, 2037, 2344, 2420
MaeI	CTAG	7 cut(s)	330, 755, 978, 1028, 1133, 1590, 1760
MaeII	ACGT	5 cut(s)	417, 1414, 1541, 2098, 2792
MaeIII	GTNAC	6 cut(s)	358, 1255, 1337, 1903, 2443, 2959
MalI	GATC	7 cut(s)	309, 1273, 1570, 1594, 2406, 2541, 2850
MboI	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
MfeI	CAATTG	2 cut(s)	458, 1558
MflI	RGATCY	2 cut(s)	307, 1568
MhlI	GDGCHC	2 cut(s)	1769, 2479
MlyI	GAGTC	5 cut(s)	356, 875, 1900, 2708, 2920
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	2435
MroXI	GAANNNNTTC	2 cut(s)	16, 2621
MseI	TTAA	3 cut(s)	849, 1266, 2159
MslI	CAYNNNNRTG	1 cut(s)	2968
MspA1I	CMGCKG	4 cut(s)	580, 1169, 1252, 2384
MspR9I	CCNGG	6 cut(s)	54, 121, 122, 127, 1921, 2520
MunI	CAATTG	2 cut(s)	458, 1558
Mva1269I	GAATGC	1 cut(s)	2433
MvaI	CCWGG	2 cut(s)	127, 2520
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	9 cut(s)	131, 481, 699, 820, 1403, 1560, 2217, 2381, 2689
NciI	CCSGG	4 cut(s)	54, 121, 122, 1921
NdeI	CATATG	1 cut(s)	2240
NdeII	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
NlaIV	GGNNCC	7 cut(s)	47, 119, 474, 516, 1816, 2279, 2917
NmeAIII	GCCGAG	1 cut(s)	1113
NmuCI	GTSAC	4 cut(s)	358, 1255, 1337, 2443
NsiI	ATGCAT	1 cut(s)	2435
NspI	RCATGY	2 cut(s)	1397, 1476
NspV	TTCGAA	1 cut(s)	2437
OliI	CACNNNNGTG	1 cut(s)	2968
PaeI	GCATGC	2 cut(s)	1397, 1476
PagI	TCATGA	2 cut(s)	1789, 2845
PceI	AGGCCT	1 cut(s)	2883
PciSI	GCTCTTC	2 cut(s)	287, 608
PctI	GAATGC	1 cut(s)	2433
PdmI	GAANNNNTTC	2 cut(s)	16, 2621
PfeI	GAWTC	7 cut(s)	17, 488, 704, 956, 1004, 1835, 2876
PflFI	GACNNNGTC	1 cut(s)	1754
PinAI	ACCGGT	1 cut(s)	941
PkrI	GCNGC	9 cut(s)	147, 198, 579, 695, 816, 1251, 1660, 2045, 2383
PleI	GAGTC	5 cut(s)	355, 874, 1899, 2707, 2920
PpsI	GAGTC	5 cut(s)	355, 874, 1899, 2707, 2920
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	125, 2518
PspFI	CCCAGC	1 cut(s)	2939
PspGI	CCWGG	2 cut(s)	125, 2518
PspN4I	GGNNCC	7 cut(s)	47, 119, 474, 516, 1816, 2279, 2917
PspPI	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2516, 2741, 2916
PstI	CTGCAG	2 cut(s)	1294, 2222
PsuI	RGATCY	2 cut(s)	307, 1568
PsyI	GACNNNGTC	1 cut(s)	1754
PvuII	CAGCTG	2 cut(s)	1169, 2384
RsaI	GTAC	8 cut(s)	590, 827, 1427, 1546, 1816, 2308, 2315, 2948
RsaNI	GTAC	8 cut(s)	589, 826, 1426, 1545, 1815, 2307, 2314, 2947
RseI	CAYNNNNRTG	1 cut(s)	2968
SapI	GCTCTTC	2 cut(s)	287, 608
SaqAI	TTAA	3 cut(s)	849, 1266, 2159
SatI	GCNGC	9 cut(s)	146, 197, 578, 694, 815, 1250, 1659, 2044, 2382
Sau3AI	GATC	7 cut(s)	307, 1271, 1568, 1592, 2404, 2539, 2848
Sau96I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2516, 2741, 2916
SchI	GAGTC	5 cut(s)	356, 875, 1900, 2708, 2920
ScrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 1921, 2520
SduI	GDGCHC	2 cut(s)	1769, 2479
SfaNI	GCATC	7 cut(s)	277, 611, 1340, 1914, 2037, 2344, 2420
SfcI	CTRYAG	3 cut(s)	1290, 1653, 2218
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	2437
SinI	GGWCC	4 cut(s)	46, 117, 2516, 2741
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	2968
SmlI	CTYRAG	4 cut(s)	1241, 1436, 2928, 2966
SmoI	CTYRAG	4 cut(s)	1241, 1436, 2928, 2966
SphI	GCATGC	2 cut(s)	1397, 1476
SseBI	AGGCCT	1 cut(s)	2883
SspMI	CTAG	7 cut(s)	330, 755, 978, 1028, 1133, 1590, 1760
StuI	AGGCCT	1 cut(s)	2883
StyD4I	CCNGG	6 cut(s)	52, 119, 120, 125, 1919, 2518
StyI	CCWWGG	5 cut(s)	351, 977, 1494, 2258, 2826
TaiI	ACGT	5 cut(s)	420, 1417, 1544, 2101, 2795
TaqI	TCGA	8 cut(s)	491, 533, 605, 1038, 1894, 2340, 2437, 2886
TaqII	GACCGA	3 cut(s)	585, 822, 1092
TatI	WGTACW	2 cut(s)	1425, 2946
TauI	GCSGC	3 cut(s)	199, 580, 817
TfiI	GAWTC	7 cut(s)	17, 488, 704, 956, 1004, 1835, 2876
Tru1I	TTAA	3 cut(s)	849, 1266, 2159
Tru9I	TTAA	3 cut(s)	849, 1266, 2159
TscAI	CASTG	6 cut(s)	684, 889, 1346, 2203, 2484, 2549
TseFI	GTSAC	4 cut(s)	358, 1255, 1337, 2443
TseI	GCWGC	6 cut(s)	145, 693, 1249, 1658, 2043, 2381
Tsp45I	GTSAC	4 cut(s)	358, 1255, 1337, 2443
TspGWI	ACGGA	3 cut(s)	24, 29, 697
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	6 cut(s)	684, 889, 1346, 2203, 2484, 2549
Tth111I	GACNNNGTC	1 cut(s)	1754
VneI	GTGCAC	1 cut(s)	2475
VpaK11BI	GGWCC	4 cut(s)	46, 117, 2516, 2741
XapI	RAATTY	2 cut(s)	2555, 2933
XceI	RCATGY	2 cut(s)	1397, 1476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2616
XmaI	CCCGGG	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	977
XmiI	GTMKAC	1 cut(s)	2186
XmnI	GAANNNNTTC	2 cut(s)	16, 2621
XspI	CTAG	7 cut(s)	330, 755, 978, 1028, 1133, 1590, 1760
Zsp2I	ATGCAT	1 cut(s)	2435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.